data_3JWC # _model_server_result.job_id 15kgbXvIjZ4AKpljXK6gqA _model_server_result.datetime_utc '2024-10-19 12:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":208}' # _entry.id 3JWC # _exptl.entry_id 3JWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.392 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-[3-(3,4,5-trimethoxyphenyl)prop-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JWC _cell.length_a 77.845 _cell.length_b 77.845 _cell.length_c 67.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C18 H22 N4 O3' _chem_comp.formula_weight 342.392 _chem_comp.id EKB _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-[3-(3,4,5-trimethoxyphenyl)prop-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 EKB doub 83 n y C6 N1 EKB sing 84 n y N3 C2 EKB sing 85 n y C2 N1E EKB sing 86 n n C4 N3 EKB doub 87 n y C1K C4 EKB sing 88 n n C4 C5 EKB sing 89 n y C1H C5 EKB sing 90 n n C5 C6 EKB doub 91 n y C6 N1F EKB sing 92 n n C1A C1K EKB sing 93 n n C1A H1A EKB sing 94 n n C1A H1AA EKB sing 95 n n C1A H1AB EKB sing 96 n n O1O C1B EKB sing 97 n n C1B H1B EKB sing 98 n n C1B H1BA EKB sing 99 n n C1B H1BB EKB sing 100 n n O1P C1C EKB sing 101 n n C1C H1C EKB sing 102 n n C1C H1CA EKB sing 103 n n C1C H1CB EKB sing 104 n n C1D O1Q EKB sing 105 n n C1D H1D EKB sing 106 n n C1D H1DA EKB sing 107 n n C1D H1DB EKB sing 108 n n N1E HN1E EKB sing 109 n n N1E HN1A EKB sing 110 n n N1F HN1F EKB sing 111 n n N1F HN1B EKB sing 112 n n C1L C1G EKB sing 113 n n C1G C1H EKB trip 114 n n C1V C1I EKB doub 115 n y C1I C1S EKB sing 116 n y C1I H1I EKB sing 117 n n C1W C1J EKB sing 118 n y C1J C1S EKB doub 119 n y C1J H1J EKB sing 120 n n C1K H1K EKB sing 121 n n C1K H1KA EKB sing 122 n n C1S C1L EKB sing 123 n n C1L H1L EKB sing 124 n n C1L H1LA EKB sing 125 n n O1O C1V EKB sing 126 n n O1P C1W EKB sing 127 n n O1Q C1Y EKB sing 128 n n C1Y C1V EKB sing 129 n y C1Y C1W EKB doub 130 n y # _atom_sites.entry_id 3JWC _atom_sites.fract_transf_matrix[1][1] 0.012846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 EKB A 1 208 1 EKB EKB . E 2 NDP B 1 207 207 NDP NAP . F 3 EKB B 1 208 1 EKB EKB . G 4 HOH A 1 163 1 HOH HOH . G 4 HOH A 2 164 2 HOH HOH . G 4 HOH A 3 165 5 HOH HOH . G 4 HOH A 4 166 7 HOH HOH . G 4 HOH A 5 167 11 HOH HOH . G 4 HOH A 6 168 12 HOH HOH . G 4 HOH A 7 169 18 HOH HOH . G 4 HOH A 8 170 19 HOH HOH . G 4 HOH A 9 171 23 HOH HOH . G 4 HOH A 10 172 24 HOH HOH . G 4 HOH A 11 173 26 HOH HOH . G 4 HOH A 12 174 31 HOH HOH . G 4 HOH A 13 175 32 HOH HOH . G 4 HOH A 14 176 33 HOH HOH . G 4 HOH A 15 177 36 HOH HOH . G 4 HOH A 16 178 37 HOH HOH . G 4 HOH A 17 179 43 HOH HOH . G 4 HOH A 18 180 46 HOH HOH . G 4 HOH A 19 181 47 HOH HOH . G 4 HOH A 20 182 48 HOH HOH . G 4 HOH A 21 183 49 HOH HOH . G 4 HOH A 22 184 53 HOH HOH . G 4 HOH A 23 185 54 HOH HOH . G 4 HOH A 24 186 58 HOH HOH . G 4 HOH A 25 187 61 HOH HOH . G 4 HOH A 26 188 64 HOH HOH . G 4 HOH A 27 189 66 HOH HOH . G 4 HOH A 28 190 67 HOH HOH . G 4 HOH A 29 191 70 HOH HOH . G 4 HOH A 30 192 71 HOH HOH . G 4 HOH A 31 193 72 HOH HOH . G 4 HOH A 32 194 74 HOH HOH . G 4 HOH A 33 195 76 HOH HOH . G 4 HOH A 34 196 77 HOH HOH . G 4 HOH A 35 197 79 HOH HOH . G 4 HOH A 36 198 80 HOH HOH . G 4 HOH A 37 199 81 HOH HOH . G 4 HOH A 38 200 82 HOH HOH . G 4 HOH A 39 201 84 HOH HOH . G 4 HOH A 40 202 85 HOH HOH . G 4 HOH A 41 203 86 HOH HOH . G 4 HOH A 42 204 88 HOH HOH . G 4 HOH A 43 205 89 HOH HOH . G 4 HOH A 44 206 90 HOH HOH . G 4 HOH A 45 209 91 HOH HOH . G 4 HOH A 46 210 92 HOH HOH . G 4 HOH A 47 211 93 HOH HOH . G 4 HOH A 48 212 94 HOH HOH . G 4 HOH A 49 213 96 HOH HOH . G 4 HOH A 50 214 97 HOH HOH . G 4 HOH A 51 215 98 HOH HOH . G 4 HOH A 52 216 100 HOH HOH . G 4 HOH A 53 217 103 HOH HOH . G 4 HOH A 54 218 104 HOH HOH . G 4 HOH A 55 219 105 HOH HOH . G 4 HOH A 56 220 107 HOH HOH . G 4 HOH A 57 221 108 HOH HOH . G 4 HOH A 58 222 110 HOH HOH . G 4 HOH A 59 223 113 HOH HOH . G 4 HOH A 60 224 115 HOH HOH . G 4 HOH A 61 225 119 HOH HOH . G 4 HOH A 62 226 120 HOH HOH . G 4 HOH A 63 227 123 HOH HOH . G 4 HOH A 64 228 124 HOH HOH . H 4 HOH B 1 163 3 HOH HOH . H 4 HOH B 2 164 4 HOH HOH . H 4 HOH B 3 165 6 HOH HOH . H 4 HOH B 4 166 8 HOH HOH . H 4 HOH B 5 167 9 HOH HOH . H 4 HOH B 6 168 10 HOH HOH . H 4 HOH B 7 169 13 HOH HOH . H 4 HOH B 8 170 14 HOH HOH . H 4 HOH B 9 171 15 HOH HOH . H 4 HOH B 10 172 16 HOH HOH . H 4 HOH B 11 173 17 HOH HOH . H 4 HOH B 12 174 20 HOH HOH . H 4 HOH B 13 175 21 HOH HOH . H 4 HOH B 14 176 22 HOH HOH . H 4 HOH B 15 177 25 HOH HOH . H 4 HOH B 16 178 27 HOH HOH . H 4 HOH B 17 179 30 HOH HOH . H 4 HOH B 18 180 34 HOH HOH . H 4 HOH B 19 181 35 HOH HOH . H 4 HOH B 20 182 38 HOH HOH . H 4 HOH B 21 183 40 HOH HOH . H 4 HOH B 22 184 41 HOH HOH . H 4 HOH B 23 185 42 HOH HOH . H 4 HOH B 24 186 45 HOH HOH . H 4 HOH B 25 187 50 HOH HOH . H 4 HOH B 26 188 51 HOH HOH . H 4 HOH B 27 189 52 HOH HOH . H 4 HOH B 28 190 55 HOH HOH . H 4 HOH B 29 191 56 HOH HOH . H 4 HOH B 30 192 57 HOH HOH . H 4 HOH B 31 193 59 HOH HOH . H 4 HOH B 32 194 60 HOH HOH . H 4 HOH B 33 195 63 HOH HOH . H 4 HOH B 34 196 65 HOH HOH . H 4 HOH B 35 197 68 HOH HOH . H 4 HOH B 36 198 69 HOH HOH . H 4 HOH B 37 199 73 HOH HOH . H 4 HOH B 38 200 75 HOH HOH . H 4 HOH B 39 201 78 HOH HOH . H 4 HOH B 40 202 83 HOH HOH . H 4 HOH B 41 203 87 HOH HOH . H 4 HOH B 42 204 95 HOH HOH . H 4 HOH B 43 205 99 HOH HOH . H 4 HOH B 44 206 102 HOH HOH . H 4 HOH B 45 209 106 HOH HOH . H 4 HOH B 46 210 109 HOH HOH . H 4 HOH B 47 211 111 HOH HOH . H 4 HOH B 48 212 112 HOH HOH . H 4 HOH B 49 213 116 HOH HOH . H 4 HOH B 50 214 117 HOH HOH . H 4 HOH B 51 215 121 HOH HOH . H 4 HOH B 52 216 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EKB . . . F 3 14.291 9.657 -6.048 1 25.12 ? N1 EKB 208 B 1 HETATM 2 C C2 EKB . . . F 3 15.124 9.432 -5.017 1 24.83 ? C2 EKB 208 B 1 HETATM 3 N N3 EKB . . . F 3 14.646 9.254 -3.782 1 24.52 ? N3 EKB 208 B 1 HETATM 4 C C4 EKB . . . F 3 13.33 9.289 -3.529 1 24.96 ? C4 EKB 208 B 1 HETATM 5 C C5 EKB . . . F 3 12.441 9.511 -4.589 1 25.3 ? C5 EKB 208 B 1 HETATM 6 C C6 EKB . . . F 3 12.963 9.694 -5.868 1 25.09 ? C6 EKB 208 B 1 HETATM 7 C C1A EKB . . . F 3 12.922 7.566 -1.766 1 25.28 ? C1A EKB 208 B 1 HETATM 8 C C1B EKB . . . F 3 5.296 8.882 0.379 1 25.63 ? C1B EKB 208 B 1 HETATM 9 C C1C EKB . . . F 3 9.625 14.221 -1.485 1 23.44 ? C1C EKB 208 B 1 HETATM 10 C C1D EKB . . . F 3 8.291 11.818 2.488 1 26.2 ? C1D EKB 208 B 1 HETATM 11 N N1E EKB . . . F 3 16.435 9.389 -5.215 1 24.95 ? N1E EKB 208 B 1 HETATM 12 N N1F EKB . . . F 3 12.171 9.907 -6.908 1 24.84 ? N1F EKB 208 B 1 HETATM 13 C C1G EKB . . . F 3 9.83 9.566 -4.024 1 24.89 ? C1G EKB 208 B 1 HETATM 14 C C1H EKB . . . F 3 11.024 9.55 -4.334 1 24.93 ? C1H EKB 208 B 1 HETATM 15 C C1I EKB . . . F 3 7.241 9.781 -1.333 1 24.79 ? C1I EKB 208 B 1 HETATM 16 C C1J EKB . . . F 3 8.87 11.466 -1.953 1 24.75 ? C1J EKB 208 B 1 HETATM 17 C C1K EKB . . . F 3 12.919 9.066 -2.075 1 24.81 ? C1K EKB 208 B 1 HETATM 18 C C1L EKB . . . F 3 8.417 9.569 -3.594 1 24.95 ? C1L EKB 208 B 1 HETATM 19 O O1O EKB . . . F 3 6.118 9.979 0.818 1 24.81 ? O1O EKB 208 B 1 HETATM 20 O O1P EKB . . . F 3 9.337 13.285 -0.431 1 24.99 ? O1P EKB 208 B 1 HETATM 21 O O1Q EKB . . . F 3 7.505 12.281 1.377 1 25.12 ? O1Q EKB 208 B 1 HETATM 22 C C1S EKB . . . F 3 8.173 10.289 -2.254 1 25.07 ? C1S EKB 208 B 1 HETATM 23 C C1V EKB . . . F 3 7.014 10.445 -0.109 1 24.94 ? C1V EKB 208 B 1 HETATM 24 C C1W EKB . . . F 3 8.648 12.138 -0.742 1 24.69 ? C1W EKB 208 B 1 HETATM 25 C C1Y EKB . . . F 3 7.73 11.618 0.191 1 24.8 ? C1Y EKB 208 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #