data_3JWF # _model_server_result.job_id '_E7c1b0_FKGHDCLUGid6Zw' _model_server_result.datetime_utc '2025-02-27 11:59:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":208}' # _entry.id 3JWF # _exptl.entry_id 3JWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.365 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R)-3-(2,4-diamino-6-methylpyrimidin-5-yl)-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JWF _cell.length_a 77.893 _cell.length_b 77.893 _cell.length_c 67.055 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C17 H20 N4 O4' _chem_comp.formula_weight 344.365 _chem_comp.id 5WA _chem_comp.mon_nstd_flag . _chem_comp.name (1R)-3-(2,4-diamino-6-methylpyrimidin-5-yl)-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (R)-2,4-diamino-5-(3-hydroxy-3-(3,4,5-trimethoxyphenyl)prop-1-ynyl)-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 5WA doub 1 n y N1 C2 5WA sing 2 n y C2 N1E 5WA sing 3 n n C2 N3 5WA doub 4 n y C4 N3 5WA sing 5 n y C5 C4 5WA doub 6 n y C4 N1F 5WA sing 7 n n C6 C5 5WA sing 8 n y C1H C5 5WA sing 9 n n C1D C6 5WA sing 10 n n O1N C1A 5WA sing 11 n n C1A H1A 5WA sing 12 n n C1A H1AA 5WA sing 13 n n C1A H1AB 5WA sing 14 n n O1O C1B 5WA sing 15 n n C1B H1B 5WA sing 16 n n C1B H1BA 5WA sing 17 n n C1B H1BB 5WA sing 18 n n C1C O1P 5WA sing 19 n n C1C H1C 5WA sing 20 n n C1C H1CA 5WA sing 21 n n C1C H1CB 5WA sing 22 n n C1D H1D 5WA sing 23 n n C1D H1DA 5WA sing 24 n n C1D H1DB 5WA sing 25 n n N1E HN1E 5WA sing 26 n n N1E HN1A 5WA sing 27 n n N1F HN1F 5WA sing 28 n n N1F HN1B 5WA sing 29 n n C1Y O1G 5WA sing 30 n n O1G HO1G 5WA sing 31 n n C1I C1H 5WA trip 32 n n C1Y C1I 5WA sing 33 n n C1V C1J 5WA doub 34 n y C1J C1U 5WA sing 35 n y C1J H1J 5WA sing 36 n n C1W C1K 5WA sing 37 n y C1K C1U 5WA doub 38 n y C1K H1K 5WA sing 39 n n O1N C1V 5WA sing 40 n n O1O C1W 5WA sing 41 n n O1P C1X 5WA sing 42 n n C1U C1Y 5WA sing 43 n n C1X C1V 5WA sing 44 n y C1X C1W 5WA doub 45 n y C1Y H1Y 5WA sing 46 n n # _atom_sites.entry_id 3JWF _atom_sites.fract_transf_matrix[1][1] 0.012838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 5WA A 1 208 1 5WA 5WA . E 2 NDP B 1 207 207 NDP NAP . F 3 5WA B 1 208 1 5WA 5WA . G 4 HOH A 1 163 4 HOH HOH . G 4 HOH A 2 164 5 HOH HOH . G 4 HOH A 3 165 7 HOH HOH . G 4 HOH A 4 166 9 HOH HOH . G 4 HOH A 5 167 11 HOH HOH . G 4 HOH A 6 168 13 HOH HOH . G 4 HOH A 7 169 14 HOH HOH . G 4 HOH A 8 170 15 HOH HOH . G 4 HOH A 9 171 16 HOH HOH . G 4 HOH A 10 172 21 HOH HOH . G 4 HOH A 11 173 23 HOH HOH . G 4 HOH A 12 174 24 HOH HOH . G 4 HOH A 13 175 26 HOH HOH . G 4 HOH A 14 176 27 HOH HOH . G 4 HOH A 15 177 28 HOH HOH . G 4 HOH A 16 178 29 HOH HOH . G 4 HOH A 17 179 31 HOH HOH . G 4 HOH A 18 180 32 HOH HOH . G 4 HOH A 19 181 34 HOH HOH . G 4 HOH A 20 182 35 HOH HOH . G 4 HOH A 21 183 36 HOH HOH . G 4 HOH A 22 184 41 HOH HOH . G 4 HOH A 23 185 42 HOH HOH . G 4 HOH A 24 186 44 HOH HOH . G 4 HOH A 25 187 45 HOH HOH . G 4 HOH A 26 188 46 HOH HOH . G 4 HOH A 27 189 48 HOH HOH . G 4 HOH A 28 190 50 HOH HOH . G 4 HOH A 29 191 51 HOH HOH . G 4 HOH A 30 192 52 HOH HOH . G 4 HOH A 31 193 56 HOH HOH . G 4 HOH A 32 194 60 HOH HOH . G 4 HOH A 33 195 61 HOH HOH . G 4 HOH A 34 196 63 HOH HOH . G 4 HOH A 35 197 68 HOH HOH . G 4 HOH A 36 198 69 HOH HOH . G 4 HOH A 37 199 72 HOH HOH . G 4 HOH A 38 200 73 HOH HOH . G 4 HOH A 39 201 75 HOH HOH . G 4 HOH A 40 202 80 HOH HOH . G 4 HOH A 41 203 83 HOH HOH . G 4 HOH A 42 204 84 HOH HOH . G 4 HOH A 43 205 85 HOH HOH . G 4 HOH A 44 206 86 HOH HOH . G 4 HOH A 45 209 88 HOH HOH . G 4 HOH A 46 210 89 HOH HOH . G 4 HOH A 47 211 90 HOH HOH . G 4 HOH A 48 212 95 HOH HOH . G 4 HOH A 49 213 97 HOH HOH . G 4 HOH A 50 214 98 HOH HOH . G 4 HOH A 51 215 101 HOH HOH . G 4 HOH A 52 216 102 HOH HOH . G 4 HOH A 53 217 103 HOH HOH . G 4 HOH A 54 218 108 HOH HOH . G 4 HOH A 55 219 111 HOH HOH . G 4 HOH A 56 220 113 HOH HOH . G 4 HOH A 57 221 114 HOH HOH . H 4 HOH B 1 163 1 HOH HOH . H 4 HOH B 2 164 2 HOH HOH . H 4 HOH B 3 165 3 HOH HOH . H 4 HOH B 4 166 6 HOH HOH . H 4 HOH B 5 167 8 HOH HOH . H 4 HOH B 6 168 10 HOH HOH . H 4 HOH B 7 169 12 HOH HOH . H 4 HOH B 8 170 18 HOH HOH . H 4 HOH B 9 171 19 HOH HOH . H 4 HOH B 10 172 20 HOH HOH . H 4 HOH B 11 173 22 HOH HOH . H 4 HOH B 12 174 25 HOH HOH . H 4 HOH B 13 175 30 HOH HOH . H 4 HOH B 14 176 33 HOH HOH . H 4 HOH B 15 177 37 HOH HOH . H 4 HOH B 16 178 38 HOH HOH . H 4 HOH B 17 179 39 HOH HOH . H 4 HOH B 18 180 40 HOH HOH . H 4 HOH B 19 181 43 HOH HOH . H 4 HOH B 20 182 47 HOH HOH . H 4 HOH B 21 183 49 HOH HOH . H 4 HOH B 22 184 53 HOH HOH . H 4 HOH B 23 185 54 HOH HOH . H 4 HOH B 24 186 55 HOH HOH . H 4 HOH B 25 187 57 HOH HOH . H 4 HOH B 26 188 58 HOH HOH . H 4 HOH B 27 189 59 HOH HOH . H 4 HOH B 28 190 62 HOH HOH . H 4 HOH B 29 191 64 HOH HOH . H 4 HOH B 30 192 66 HOH HOH . H 4 HOH B 31 193 67 HOH HOH . H 4 HOH B 32 194 70 HOH HOH . H 4 HOH B 33 195 71 HOH HOH . H 4 HOH B 34 196 74 HOH HOH . H 4 HOH B 35 197 78 HOH HOH . H 4 HOH B 36 198 79 HOH HOH . H 4 HOH B 37 199 81 HOH HOH . H 4 HOH B 38 200 82 HOH HOH . H 4 HOH B 39 201 87 HOH HOH . H 4 HOH B 40 202 91 HOH HOH . H 4 HOH B 41 203 92 HOH HOH . H 4 HOH B 42 204 94 HOH HOH . H 4 HOH B 43 205 96 HOH HOH . H 4 HOH B 44 206 99 HOH HOH . H 4 HOH B 45 209 100 HOH HOH . H 4 HOH B 46 210 104 HOH HOH . H 4 HOH B 47 211 106 HOH HOH . H 4 HOH B 48 212 107 HOH HOH . H 4 HOH B 49 213 109 HOH HOH . H 4 HOH B 50 214 110 HOH HOH . H 4 HOH B 51 215 115 HOH HOH . H 4 HOH B 52 216 116 HOH HOH . H 4 HOH B 53 217 117 HOH HOH . H 4 HOH B 54 218 118 HOH HOH . H 4 HOH B 55 219 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 5WA . . . D 3 21.741 41.944 -7.007 1 28.49 ? N1 5WA 208 A 1 HETATM 2 C C2 5WA . . . D 3 21.297 41.926 -5.744 1 28.56 ? C2 5WA 208 A 1 HETATM 3 N N3 5WA . . . D 3 22.059 42.405 -4.743 1 28.51 ? N3 5WA 208 A 1 HETATM 4 C C4 5WA . . . D 3 23.279 42.906 -4.987 1 28.5 ? C4 5WA 208 A 1 HETATM 5 C C5 5WA . . . D 3 23.768 42.924 -6.291 1 28.74 ? C5 5WA 208 A 1 HETATM 6 C C6 5WA . . . D 3 22.955 42.421 -7.31 1 28.72 ? C6 5WA 208 A 1 HETATM 7 C C1A 5WA . . . D 3 24.809 48.136 -9.382 1 29.99 ? C1A 5WA 208 A 1 HETATM 8 C C1B 5WA . . . D 3 30.885 44.864 -10.943 1 30.28 ? C1B 5WA 208 A 1 HETATM 9 C C1C 5WA . . . D 3 26.819 46.312 -13.205 1 30.93 ? C1C 5WA 208 A 1 HETATM 10 C C1D 5WA . . . D 3 23.408 42.4 -8.778 1 28.73 ? C1D 5WA 208 A 1 HETATM 11 N N1E 5WA . . . D 3 20.086 41.432 -5.499 1 28.54 ? N1E 5WA 208 A 1 HETATM 12 N N1F 5WA . . . D 3 24.019 43.368 -3.983 1 28.47 ? N1F 5WA 208 A 1 HETATM 13 O O1G 5WA . . . D 3 27.867 45.38 -6.06 1 29.63 ? O1G 5WA 208 A 1 HETATM 14 C C1H 5WA . . . D 3 25.077 43.448 -6.569 1 28.7 ? C1H 5WA 208 A 1 HETATM 15 C C1I 5WA . . . D 3 26.2 43.899 -6.808 1 29.1 ? C1I 5WA 208 A 1 HETATM 16 C C1J 5WA . . . D 3 26.555 46.044 -8.818 1 29.92 ? C1J 5WA 208 A 1 HETATM 17 C C1K 5WA . . . D 3 28.583 44.861 -9.368 1 30.27 ? C1K 5WA 208 A 1 HETATM 18 O O1N 5WA . . . D 3 25.59 47.564 -10.453 1 30.32 ? O1N 5WA 208 A 1 HETATM 19 O O1O 5WA . . . D 3 29.614 45.206 -11.526 1 30.14 ? O1O 5WA 208 A 1 HETATM 20 O O1P 5WA . . . D 3 27.618 46.993 -12.209 1 30.34 ? O1P 5WA 208 A 1 HETATM 21 C C1U 5WA . . . D 3 27.559 45.14 -8.461 1 29.93 ? C1U 5WA 208 A 1 HETATM 22 C C1V 5WA . . . D 3 26.568 46.672 -10.073 1 30.42 ? C1V 5WA 208 A 1 HETATM 23 C C1W 5WA . . . D 3 28.617 45.482 -10.625 1 30.22 ? C1W 5WA 208 A 1 HETATM 24 C C1X 5WA . . . D 3 27.598 46.379 -10.981 1 30.26 ? C1X 5WA 208 A 1 HETATM 25 C C1Y 5WA . . . D 3 27.544 44.444 -7.086 1 29.18 ? C1Y 5WA 208 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 25 #