data_3JWH
#
_model_server_result.job_id            HDXRQD0VGxuRhwuZsWd5jQ 
_model_server_result.datetime_utc      '2025-03-05 22:25:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jwh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3JWH 
#
_exptl.entry_id    3JWH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.36 
_cell.angle_gamma         90 
_cell.entry_id            3JWH 
_cell.length_a            56.519 
_cell.length_b            49.772 
_cell.length_c            90.433 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JWH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     3JWH 
_atom_sites.fract_transf_matrix[1][1]    0.017693 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003555 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020092 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011279 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 1 1 SAH SAH . 
D 2 SAH B 1 1 1 SAH SAH . 
E 3 HOH A 1 2 2 HOH HOH . 
E 3 HOH A 2 3 3 HOH HOH . 
E 3 HOH A 3 4 4 HOH HOH . 
E 3 HOH A 4 5 5 HOH HOH . 
E 3 HOH A 5 6 6 HOH HOH . 
E 3 HOH A 6 7 7 HOH HOH . 
E 3 HOH A 7 8 8 HOH HOH . 
E 3 HOH A 8 9 9 HOH HOH . 
E 3 HOH A 9 10 10 HOH HOH . 
E 3 HOH A 10 11 11 HOH HOH . 
E 3 HOH A 11 12 12 HOH HOH . 
E 3 HOH A 12 13 13 HOH HOH . 
E 3 HOH A 13 14 14 HOH HOH . 
E 3 HOH A 14 15 15 HOH HOH . 
E 3 HOH A 15 16 16 HOH HOH . 
E 3 HOH A 16 17 17 HOH HOH . 
E 3 HOH A 17 18 18 HOH HOH . 
E 3 HOH A 18 19 19 HOH HOH . 
E 3 HOH A 19 20 20 HOH HOH . 
E 3 HOH A 20 21 21 HOH HOH . 
E 3 HOH A 21 22 22 HOH HOH . 
E 3 HOH A 22 23 23 HOH HOH . 
E 3 HOH A 23 24 24 HOH HOH . 
E 3 HOH A 24 25 25 HOH HOH . 
E 3 HOH A 25 26 26 HOH HOH . 
E 3 HOH A 26 27 27 HOH HOH . 
E 3 HOH A 27 28 28 HOH HOH . 
E 3 HOH A 28 29 29 HOH HOH . 
E 3 HOH A 29 30 30 HOH HOH . 
E 3 HOH A 30 31 31 HOH HOH . 
E 3 HOH A 31 32 32 HOH HOH . 
E 3 HOH A 32 33 33 HOH HOH . 
E 3 HOH A 33 34 34 HOH HOH . 
E 3 HOH A 34 35 35 HOH HOH . 
E 3 HOH A 35 36 36 HOH HOH . 
E 3 HOH A 36 37 37 HOH HOH . 
E 3 HOH A 37 38 38 HOH HOH . 
E 3 HOH A 38 39 39 HOH HOH . 
E 3 HOH A 39 40 40 HOH HOH . 
E 3 HOH A 40 41 41 HOH HOH . 
E 3 HOH A 41 42 42 HOH HOH . 
E 3 HOH A 42 43 43 HOH HOH . 
E 3 HOH A 43 46 46 HOH HOH . 
E 3 HOH A 44 47 47 HOH HOH . 
E 3 HOH A 45 48 48 HOH HOH . 
E 3 HOH A 46 469 1 HOH HOH . 
F 3 HOH B 1 44 44 HOH HOH . 
F 3 HOH B 2 45 45 HOH HOH . 
F 3 HOH B 3 49 49 HOH HOH . 
F 3 HOH B 4 50 50 HOH HOH . 
F 3 HOH B 5 51 51 HOH HOH . 
F 3 HOH B 6 52 52 HOH HOH . 
F 3 HOH B 7 53 53 HOH HOH . 
F 3 HOH B 8 54 54 HOH HOH . 
F 3 HOH B 9 55 55 HOH HOH . 
F 3 HOH B 10 56 56 HOH HOH . 
F 3 HOH B 11 57 57 HOH HOH . 
F 3 HOH B 12 58 58 HOH HOH . 
F 3 HOH B 13 59 59 HOH HOH . 
F 3 HOH B 14 60 60 HOH HOH . 
F 3 HOH B 15 61 61 HOH HOH . 
F 3 HOH B 16 62 62 HOH HOH . 
F 3 HOH B 17 63 63 HOH HOH . 
F 3 HOH B 18 64 64 HOH HOH . 
F 3 HOH B 19 65 65 HOH HOH . 
F 3 HOH B 20 66 66 HOH HOH . 
F 3 HOH B 21 67 67 HOH HOH . 
F 3 HOH B 22 68 68 HOH HOH . 
F 3 HOH B 23 69 69 HOH HOH . 
F 3 HOH B 24 70 70 HOH HOH . 
F 3 HOH B 25 71 71 HOH HOH . 
F 3 HOH B 26 72 72 HOH HOH . 
F 3 HOH B 27 73 73 HOH HOH . 
F 3 HOH B 28 74 74 HOH HOH . 
F 3 HOH B 29 75 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 -7.627 -7.67 -40.535 1 50.52 ? N SAH 1 A 1 
HETATM 2 C CA SAH . . . C 2 -7.36 -8.525 -39.368 1 51.85 ? CA SAH 1 A 1 
HETATM 3 C CB SAH . . . C 2 -7.155 -9.968 -39.833 1 49.42 ? CB SAH 1 A 1 
HETATM 4 C CG SAH . . . C 2 -8.378 -10.457 -40.609 1 47.36 ? CG SAH 1 A 1 
HETATM 5 S SD SAH . . . C 2 -8.216 -12.156 -41.272 1 44.38 ? SD SAH 1 A 1 
HETATM 6 C C SAH . . . C 2 -6.089 -8.049 -38.662 1 53.04 ? C SAH 1 A 1 
HETATM 7 O O SAH . . . C 2 -5.023 -8.611 -38.993 1 52.89 ? O SAH 1 A 1 
HETATM 8 O OXT SAH . . . C 2 -6.214 -7.14 -37.811 1 55.73 ? OXT SAH 1 A 1 
HETATM 9 C C5' SAH . . . C 2 -9.646 -12.105 -42.411 1 39.44 ? C5' SAH 1 A 1 
HETATM 10 C C4' SAH . . . C 2 -10.881 -11.519 -41.724 1 35.87 ? C4' SAH 1 A 1 
HETATM 11 O O4' SAH . . . C 2 -11.884 -11.26 -42.722 1 35.05 ? O4' SAH 1 A 1 
HETATM 12 C C3' SAH . . . C 2 -11.474 -12.532 -40.74 1 34.27 ? C3' SAH 1 A 1 
HETATM 13 O O3' SAH . . . C 2 -11.999 -11.852 -39.597 1 31.98 ? O3' SAH 1 A 1 
HETATM 14 C C2' SAH . . . C 2 -12.607 -13.134 -41.571 1 33.32 ? C2' SAH 1 A 1 
HETATM 15 O O2' SAH . . . C 2 -13.623 -13.627 -40.693 1 30.95 ? O2' SAH 1 A 1 
HETATM 16 C C1' SAH . . . C 2 -13.1 -11.858 -42.25 1 32.76 ? C1' SAH 1 A 1 
HETATM 17 N N9 SAH . . . C 2 -13.975 -12.145 -43.407 1 35.85 ? N9 SAH 1 A 1 
HETATM 18 C C8 SAH . . . C 2 -13.729 -13.032 -44.368 1 35.19 ? C8 SAH 1 A 1 
HETATM 19 N N7 SAH . . . C 2 -14.711 -13.001 -45.265 1 33.88 ? N7 SAH 1 A 1 
HETATM 20 C C5 SAH . . . C 2 -15.593 -12.087 -44.874 1 34.24 ? C5 SAH 1 A 1 
HETATM 21 C C6 SAH . . . C 2 -16.794 -11.621 -45.384 1 31.94 ? C6 SAH 1 A 1 
HETATM 22 N N6 SAH . . . C 2 -17.289 -12.127 -46.513 1 32.8 ? N6 SAH 1 A 1 
HETATM 23 N N1 SAH . . . C 2 -17.454 -10.668 -44.722 1 32.66 ? N1 SAH 1 A 1 
HETATM 24 C C2 SAH . . . C 2 -16.977 -10.167 -43.59 1 35.12 ? C2 SAH 1 A 1 
HETATM 25 N N3 SAH . . . C 2 -15.839 -10.588 -43.075 1 30.57 ? N3 SAH 1 A 1 
HETATM 26 C C4 SAH . . . C 2 -15.124 -11.541 -43.686 1 32.87 ? C4 SAH 1 A 1 
#
_model_server_stats.io_time_ms              184 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#