data_3JWM # _model_server_result.job_id VGrfmzEGVIO4umdl4CpERA _model_server_result.datetime_utc '2024-11-24 15:25:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 3JWM # _exptl.entry_id 3JWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JWM _cell.length_a 77.884 _cell.length_b 77.884 _cell.length_c 67.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 286 n n PA O2A NDP sing 287 n n PA O5B NDP sing 288 n n PA O3 NDP sing 289 n n O2A HOA2 NDP sing 290 n n O5B C5B NDP sing 291 n n C5B C4B NDP sing 292 n n C5B H51A NDP sing 293 n n C5B H52A NDP sing 294 n n C4B O4B NDP sing 295 n n C4B C3B NDP sing 296 n n C4B H4B NDP sing 297 n n O4B C1B NDP sing 298 n n C3B O3B NDP sing 299 n n C3B C2B NDP sing 300 n n C3B H3B NDP sing 301 n n O3B HO3A NDP sing 302 n n C2B O2B NDP sing 303 n n C2B C1B NDP sing 304 n n C2B H2B NDP sing 305 n n O2B P2B NDP sing 306 n n C1B N9A NDP sing 307 n n C1B H1B NDP sing 308 n n N9A C8A NDP sing 309 n y N9A C4A NDP sing 310 n y C8A N7A NDP doub 311 n y C8A H8A NDP sing 312 n n N7A C5A NDP sing 313 n y C5A C6A NDP sing 314 n y C5A C4A NDP doub 315 n y C6A N6A NDP sing 316 n n C6A N1A NDP doub 317 n y N6A H61A NDP sing 318 n n N6A H62A NDP sing 319 n n N1A C2A NDP sing 320 n y C2A N3A NDP doub 321 n y C2A H2A NDP sing 322 n n N3A C4A NDP sing 323 n y O3 PN NDP sing 324 n n PN O1N NDP doub 325 n n PN O2N NDP sing 326 n n PN O5D NDP sing 327 n n O2N H21N NDP sing 328 n n O5D C5D NDP sing 329 n n C5D C4D NDP sing 330 n n C5D H51N NDP sing 331 n n C5D H52N NDP sing 332 n n C4D O4D NDP sing 333 n n C4D C3D NDP sing 334 n n C4D H4D NDP sing 335 n n O4D C1D NDP sing 336 n n C3D O3D NDP sing 337 n n C3D C2D NDP sing 338 n n C3D H3D NDP sing 339 n n O3D HO3N NDP sing 340 n n C2D O2D NDP sing 341 n n C2D C1D NDP sing 342 n n C2D H2D NDP sing 343 n n O2D HO2N NDP sing 344 n n C1D N1N NDP sing 345 n n C1D H1D NDP sing 346 n n N1N C2N NDP sing 347 n n N1N C6N NDP sing 348 n n C2N C3N NDP doub 349 n n C2N H2N NDP sing 350 n n C3N C7N NDP sing 351 n n C3N C4N NDP sing 352 n n C7N O7N NDP doub 353 n n C7N N7N NDP sing 354 n n N7N H71N NDP sing 355 n n N7N H72N NDP sing 356 n n C4N C5N NDP sing 357 n n C4N H41N NDP sing 358 n n C4N H42N NDP sing 359 n n C5N C6N NDP doub 360 n n C5N H5N NDP sing 361 n n C6N H6N NDP sing 362 n n P2B O1X NDP doub 363 n n P2B O2X NDP sing 364 n n P2B O3X NDP sing 365 n n O2X HOP2 NDP sing 366 n n O3X HOP3 NDP sing 367 n n # _atom_sites.entry_id 3JWM _atom_sites.fract_transf_matrix[1][1] 0.01284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 5WB A 1 208 1 5WB 5WB . E 2 NDP B 1 207 207 NDP NAP . F 3 5WB B 1 208 1 5WB 5WB . G 4 HOH A 1 163 2 HOH HOH . G 4 HOH A 2 164 164 HOH HOH . G 4 HOH A 3 165 165 HOH HOH . G 4 HOH A 4 166 5 HOH HOH . G 4 HOH A 5 167 7 HOH HOH . G 4 HOH A 6 168 168 HOH HOH . G 4 HOH A 7 169 8 HOH HOH . G 4 HOH A 8 170 10 HOH HOH . G 4 HOH A 9 171 171 HOH HOH . G 4 HOH A 10 172 172 HOH HOH . G 4 HOH A 11 173 173 HOH HOH . G 4 HOH A 12 174 12 HOH HOH . G 4 HOH A 13 175 13 HOH HOH . G 4 HOH A 14 176 15 HOH HOH . G 4 HOH A 15 177 18 HOH HOH . G 4 HOH A 16 178 20 HOH HOH . G 4 HOH A 17 179 25 HOH HOH . G 4 HOH A 18 180 26 HOH HOH . G 4 HOH A 19 181 29 HOH HOH . G 4 HOH A 20 182 32 HOH HOH . G 4 HOH A 21 183 33 HOH HOH . G 4 HOH A 22 184 34 HOH HOH . G 4 HOH A 23 185 36 HOH HOH . G 4 HOH A 24 186 39 HOH HOH . G 4 HOH A 25 187 44 HOH HOH . G 4 HOH A 26 188 47 HOH HOH . G 4 HOH A 27 189 48 HOH HOH . G 4 HOH A 28 190 51 HOH HOH . G 4 HOH A 29 191 53 HOH HOH . G 4 HOH A 30 192 55 HOH HOH . G 4 HOH A 31 193 56 HOH HOH . G 4 HOH A 32 194 57 HOH HOH . G 4 HOH A 33 195 62 HOH HOH . G 4 HOH A 34 196 65 HOH HOH . G 4 HOH A 35 197 66 HOH HOH . G 4 HOH A 36 198 69 HOH HOH . G 4 HOH A 37 199 70 HOH HOH . G 4 HOH A 38 200 71 HOH HOH . G 4 HOH A 39 201 72 HOH HOH . G 4 HOH A 40 202 74 HOH HOH . G 4 HOH A 41 203 80 HOH HOH . G 4 HOH A 42 204 81 HOH HOH . G 4 HOH A 43 205 84 HOH HOH . G 4 HOH A 44 206 88 HOH HOH . G 4 HOH A 45 209 94 HOH HOH . G 4 HOH A 46 210 95 HOH HOH . G 4 HOH A 47 211 97 HOH HOH . G 4 HOH A 48 212 99 HOH HOH . G 4 HOH A 49 213 100 HOH HOH . G 4 HOH A 50 214 103 HOH HOH . G 4 HOH A 51 215 107 HOH HOH . G 4 HOH A 52 216 111 HOH HOH . G 4 HOH A 53 217 112 HOH HOH . G 4 HOH A 54 218 114 HOH HOH . G 4 HOH A 55 219 119 HOH HOH . G 4 HOH A 56 220 123 HOH HOH . G 4 HOH A 57 221 124 HOH HOH . G 4 HOH A 58 222 127 HOH HOH . G 4 HOH A 59 223 131 HOH HOH . G 4 HOH A 60 224 132 HOH HOH . G 4 HOH A 61 225 133 HOH HOH . G 4 HOH A 62 226 135 HOH HOH . G 4 HOH A 63 227 139 HOH HOH . G 4 HOH A 64 228 141 HOH HOH . G 4 HOH A 65 229 143 HOH HOH . G 4 HOH A 66 230 145 HOH HOH . G 4 HOH A 67 231 146 HOH HOH . G 4 HOH A 68 232 147 HOH HOH . G 4 HOH A 69 233 149 HOH HOH . G 4 HOH A 70 234 151 HOH HOH . G 4 HOH A 71 235 152 HOH HOH . G 4 HOH A 72 236 153 HOH HOH . G 4 HOH A 73 237 154 HOH HOH . G 4 HOH A 74 238 155 HOH HOH . G 4 HOH A 75 239 156 HOH HOH . G 4 HOH A 76 240 157 HOH HOH . G 4 HOH A 77 241 158 HOH HOH . G 4 HOH A 78 242 159 HOH HOH . G 4 HOH A 79 243 160 HOH HOH . H 4 HOH B 1 163 163 HOH HOH . H 4 HOH B 2 164 1 HOH HOH . H 4 HOH B 3 165 3 HOH HOH . H 4 HOH B 4 166 166 HOH HOH . H 4 HOH B 5 167 167 HOH HOH . H 4 HOH B 6 168 4 HOH HOH . H 4 HOH B 7 169 169 HOH HOH . H 4 HOH B 8 170 170 HOH HOH . H 4 HOH B 9 171 6 HOH HOH . H 4 HOH B 10 172 11 HOH HOH . H 4 HOH B 11 173 14 HOH HOH . H 4 HOH B 12 174 16 HOH HOH . H 4 HOH B 13 175 17 HOH HOH . H 4 HOH B 14 176 19 HOH HOH . H 4 HOH B 15 177 21 HOH HOH . H 4 HOH B 16 178 22 HOH HOH . H 4 HOH B 17 179 23 HOH HOH . H 4 HOH B 18 180 24 HOH HOH . H 4 HOH B 19 181 27 HOH HOH . H 4 HOH B 20 182 30 HOH HOH . H 4 HOH B 21 183 31 HOH HOH . H 4 HOH B 22 184 35 HOH HOH . H 4 HOH B 23 185 42 HOH HOH . H 4 HOH B 24 186 43 HOH HOH . H 4 HOH B 25 187 45 HOH HOH . H 4 HOH B 26 188 46 HOH HOH . H 4 HOH B 27 189 49 HOH HOH . H 4 HOH B 28 190 52 HOH HOH . H 4 HOH B 29 191 54 HOH HOH . H 4 HOH B 30 192 58 HOH HOH . H 4 HOH B 31 193 60 HOH HOH . H 4 HOH B 32 194 63 HOH HOH . H 4 HOH B 33 195 64 HOH HOH . H 4 HOH B 34 196 67 HOH HOH . H 4 HOH B 35 197 68 HOH HOH . H 4 HOH B 36 198 73 HOH HOH . H 4 HOH B 37 199 75 HOH HOH . H 4 HOH B 38 200 76 HOH HOH . H 4 HOH B 39 201 77 HOH HOH . H 4 HOH B 40 202 78 HOH HOH . H 4 HOH B 41 203 79 HOH HOH . H 4 HOH B 42 204 83 HOH HOH . H 4 HOH B 43 205 87 HOH HOH . H 4 HOH B 44 206 90 HOH HOH . H 4 HOH B 45 209 92 HOH HOH . H 4 HOH B 46 210 101 HOH HOH . H 4 HOH B 47 211 102 HOH HOH . H 4 HOH B 48 212 104 HOH HOH . H 4 HOH B 49 213 109 HOH HOH . H 4 HOH B 50 214 125 HOH HOH . H 4 HOH B 51 215 126 HOH HOH . H 4 HOH B 52 216 130 HOH HOH . H 4 HOH B 53 217 137 HOH HOH . H 4 HOH B 54 218 140 HOH HOH . H 4 HOH B 55 219 142 HOH HOH . H 4 HOH B 56 220 144 HOH HOH . H 4 HOH B 57 221 148 HOH HOH . H 4 HOH B 58 222 150 HOH HOH . H 4 HOH B 59 223 161 HOH HOH . H 4 HOH B 60 224 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 2.478 5.483 -10.399 1 13.01 ? PA NDP 207 B 1 HETATM 2 O O1A NDP . . . E 2 3.346 5.119 -11.542 1 13.37 ? O1A NDP 207 B 1 HETATM 3 O O2A NDP . . . E 2 3.057 6.59 -9.607 1 12.2 ? O2A NDP 207 B 1 HETATM 4 O O5B NDP . . . E 2 1.029 5.914 -10.923 1 13.17 ? O5B NDP 207 B 1 HETATM 5 C C5B NDP . . . E 2 0.258 5.043 -11.708 1 13.22 ? C5B NDP 207 B 1 HETATM 6 C C4B NDP . . . E 2 -0.835 5.915 -12.287 1 12.93 ? C4B NDP 207 B 1 HETATM 7 O O4B NDP . . . E 2 -0.303 6.723 -13.319 1 12.7 ? O4B NDP 207 B 1 HETATM 8 C C3B NDP . . . E 2 -1.986 5.134 -12.903 1 12.46 ? C3B NDP 207 B 1 HETATM 9 O O3B NDP . . . E 2 -2.926 4.741 -11.934 1 11.35 ? O3B NDP 207 B 1 HETATM 10 C C2B NDP . . . E 2 -2.533 6.157 -13.876 1 12.86 ? C2B NDP 207 B 1 HETATM 11 O O2B NDP . . . E 2 -3.302 7.156 -13.237 1 11.98 ? O2B NDP 207 B 1 HETATM 12 C C1B NDP . . . E 2 -1.279 6.873 -14.341 1 13.61 ? C1B NDP 207 B 1 HETATM 13 N N9A NDP . . . E 2 -0.821 6.273 -15.607 1 13.29 ? N9A NDP 207 B 1 HETATM 14 C C8A NDP . . . E 2 -0.105 5.114 -15.762 1 13.81 ? C8A NDP 207 B 1 HETATM 15 N N7A NDP . . . E 2 0.117 4.917 -17.081 1 14.11 ? N7A NDP 207 B 1 HETATM 16 C C5A NDP . . . E 2 -0.462 5.933 -17.762 1 14.01 ? C5A NDP 207 B 1 HETATM 17 C C6A NDP . . . E 2 -0.542 6.224 -19.119 1 14.51 ? C6A NDP 207 B 1 HETATM 18 N N6A NDP . . . E 2 0.034 5.4 -19.988 1 14.05 ? N6A NDP 207 B 1 HETATM 19 N N1A NDP . . . E 2 -1.212 7.367 -19.55 1 14.25 ? N1A NDP 207 B 1 HETATM 20 C C2A NDP . . . E 2 -1.791 8.209 -18.617 1 13.77 ? C2A NDP 207 B 1 HETATM 21 N N3A NDP . . . E 2 -1.702 7.906 -17.271 1 13.3 ? N3A NDP 207 B 1 HETATM 22 C C4A NDP . . . E 2 -1.052 6.793 -16.85 1 13.08 ? C4A NDP 207 B 1 HETATM 23 O O3 NDP . . . E 2 2.134 4.197 -9.498 1 12.38 ? O3 NDP 207 B 1 HETATM 24 P PN NDP . . . E 2 3.005 2.924 -9.063 1 11.69 ? PN NDP 207 B 1 HETATM 25 O O1N NDP . . . E 2 2.135 2.071 -8.236 1 11.77 ? O1N NDP 207 B 1 HETATM 26 O O2N NDP . . . E 2 3.638 2.373 -10.277 1 13.87 ? O2N NDP 207 B 1 HETATM 27 O O5D NDP . . . E 2 4.183 3.546 -8.153 1 12.34 ? O5D NDP 207 B 1 HETATM 28 C C5D NDP . . . E 2 3.956 4.102 -6.871 1 12.03 ? C5D NDP 207 B 1 HETATM 29 C C4D NDP . . . E 2 4.942 3.459 -5.901 1 12.15 ? C4D NDP 207 B 1 HETATM 30 O O4D NDP . . . E 2 6.265 3.836 -6.226 1 12.48 ? O4D NDP 207 B 1 HETATM 31 C C3D NDP . . . E 2 4.732 3.878 -4.46 1 11.99 ? C3D NDP 207 B 1 HETATM 32 O O3D NDP . . . E 2 4.985 2.736 -3.674 1 12.75 ? O3D NDP 207 B 1 HETATM 33 C C2D NDP . . . E 2 5.798 4.935 -4.231 1 12.39 ? C2D NDP 207 B 1 HETATM 34 O O2D NDP . . . E 2 6.171 5.067 -2.875 1 11.78 ? O2D NDP 207 B 1 HETATM 35 C C1D NDP . . . E 2 6.923 4.412 -5.116 1 11.67 ? C1D NDP 207 B 1 HETATM 36 N N1N NDP . . . E 2 7.859 5.448 -5.59 1 11.67 ? N1N NDP 207 B 1 HETATM 37 C C2N NDP . . . E 2 9.183 5.289 -5.27 1 11.19 ? C2N NDP 207 B 1 HETATM 38 C C3N NDP . . . E 2 10.124 6.226 -5.693 1 11.23 ? C3N NDP 207 B 1 HETATM 39 C C7N NDP . . . E 2 11.578 5.969 -5.427 1 11.98 ? C7N NDP 207 B 1 HETATM 40 O O7N NDP . . . E 2 12.54 6.616 -6.222 1 12.64 ? O7N NDP 207 B 1 HETATM 41 N N7N NDP . . . E 2 11.943 5.135 -4.446 1 12.44 ? N7N NDP 207 B 1 HETATM 42 C C4N NDP . . . E 2 9.711 7.332 -6.454 1 11.02 ? C4N NDP 207 B 1 HETATM 43 C C5N NDP . . . E 2 8.361 7.489 -6.786 1 9.72 ? C5N NDP 207 B 1 HETATM 44 C C6N NDP . . . E 2 7.442 6.527 -6.351 1 11.14 ? C6N NDP 207 B 1 HETATM 45 P P2B NDP . . . E 2 -4.906 7.047 -13.104 1 11.46 ? P2B NDP 207 B 1 HETATM 46 O O1X NDP . . . E 2 -5.204 5.736 -12.406 1 10.83 ? O1X NDP 207 B 1 HETATM 47 O O2X NDP . . . E 2 -5.422 8.211 -12.299 1 8.62 ? O2X NDP 207 B 1 HETATM 48 O O3X NDP . . . E 2 -5.542 7.063 -14.478 1 10.01 ? O3X NDP 207 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #