data_3JWM # _model_server_result.job_id xnkWpQ9mrOzKYUNxo9MvmQ _model_server_result.datetime_utc '2024-11-07 22:16:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":208}' # _entry.id 3JWM # _exptl.entry_id 3JWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.392 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3S)-3-methoxy-3-(3,4,5-trimethoxyphenyl)prop-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JWM _cell.length_a 77.884 _cell.length_b 77.884 _cell.length_c 67.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C18 H22 N4 O4' _chem_comp.formula_weight 358.392 _chem_comp.id 5WB _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3S)-3-methoxy-3-(3,4,5-trimethoxyphenyl)prop-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (S)-2,4-diamino-5-(3-methoxy-3-(3,4,5-trimethoxyphenyl)prop-1-ynyl)-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 5WB doub 1 n y N1 C2 5WB sing 2 n y C2 N1F 5WB sing 3 n n C2 N3 5WB doub 4 n y C4 N3 5WB sing 5 n y C5 C4 5WB doub 6 n y C4 N1G 5WB sing 7 n n C6 C5 5WB sing 8 n y C1H C5 5WB sing 9 n n C1E C6 5WB sing 10 n n O1N C1A 5WB sing 11 n n C1A H1A 5WB sing 12 n n C1A H1AA 5WB sing 13 n n C1A H1AB 5WB sing 14 n n O1O C1B 5WB sing 15 n n C1B H1B 5WB sing 16 n n C1B H1BA 5WB sing 17 n n C1B H1BB 5WB sing 18 n n O1P C1C 5WB sing 19 n n C1C H1C 5WB sing 20 n n C1C H1CA 5WB sing 21 n n C1C H1CB 5WB sing 22 n n C1D O1Q 5WB sing 23 n n C1D H1D 5WB sing 24 n n C1D H1DA 5WB sing 25 n n C1D H1DB 5WB sing 26 n n C1E H1E 5WB sing 27 n n C1E H1EA 5WB sing 28 n n C1E H1EB 5WB sing 29 n n N1F HN1F 5WB sing 30 n n N1F HN1A 5WB sing 31 n n N1G HN1G 5WB sing 32 n n N1G HN1B 5WB sing 33 n n C1I C1H 5WB trip 34 n n C1Z C1I 5WB sing 35 n n C1W C1J 5WB doub 36 n y C1J C1U 5WB sing 37 n y C1J H1J 5WB sing 38 n n C1X C1K 5WB sing 39 n y C1K C1U 5WB doub 40 n y C1K H1K 5WB sing 41 n n O1N C1W 5WB sing 42 n n O1O C1X 5WB sing 43 n n O1P C1Y 5WB sing 44 n n O1Q C1Z 5WB sing 45 n n C1U C1Z 5WB sing 46 n n C1Y C1W 5WB sing 47 n y C1Y C1X 5WB doub 48 n y C1Z H1Z 5WB sing 49 n n # _atom_sites.entry_id 3JWM _atom_sites.fract_transf_matrix[1][1] 0.01284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 5WB A 1 208 1 5WB 5WB . E 2 NDP B 1 207 207 NDP NAP . F 3 5WB B 1 208 1 5WB 5WB . G 4 HOH A 1 163 2 HOH HOH . G 4 HOH A 2 164 164 HOH HOH . G 4 HOH A 3 165 165 HOH HOH . G 4 HOH A 4 166 5 HOH HOH . G 4 HOH A 5 167 7 HOH HOH . G 4 HOH A 6 168 168 HOH HOH . G 4 HOH A 7 169 8 HOH HOH . G 4 HOH A 8 170 10 HOH HOH . G 4 HOH A 9 171 171 HOH HOH . G 4 HOH A 10 172 172 HOH HOH . G 4 HOH A 11 173 173 HOH HOH . G 4 HOH A 12 174 12 HOH HOH . G 4 HOH A 13 175 13 HOH HOH . G 4 HOH A 14 176 15 HOH HOH . G 4 HOH A 15 177 18 HOH HOH . G 4 HOH A 16 178 20 HOH HOH . G 4 HOH A 17 179 25 HOH HOH . G 4 HOH A 18 180 26 HOH HOH . G 4 HOH A 19 181 29 HOH HOH . G 4 HOH A 20 182 32 HOH HOH . G 4 HOH A 21 183 33 HOH HOH . G 4 HOH A 22 184 34 HOH HOH . G 4 HOH A 23 185 36 HOH HOH . G 4 HOH A 24 186 39 HOH HOH . G 4 HOH A 25 187 44 HOH HOH . G 4 HOH A 26 188 47 HOH HOH . G 4 HOH A 27 189 48 HOH HOH . G 4 HOH A 28 190 51 HOH HOH . G 4 HOH A 29 191 53 HOH HOH . G 4 HOH A 30 192 55 HOH HOH . G 4 HOH A 31 193 56 HOH HOH . G 4 HOH A 32 194 57 HOH HOH . G 4 HOH A 33 195 62 HOH HOH . G 4 HOH A 34 196 65 HOH HOH . G 4 HOH A 35 197 66 HOH HOH . G 4 HOH A 36 198 69 HOH HOH . G 4 HOH A 37 199 70 HOH HOH . G 4 HOH A 38 200 71 HOH HOH . G 4 HOH A 39 201 72 HOH HOH . G 4 HOH A 40 202 74 HOH HOH . G 4 HOH A 41 203 80 HOH HOH . G 4 HOH A 42 204 81 HOH HOH . G 4 HOH A 43 205 84 HOH HOH . G 4 HOH A 44 206 88 HOH HOH . G 4 HOH A 45 209 94 HOH HOH . G 4 HOH A 46 210 95 HOH HOH . G 4 HOH A 47 211 97 HOH HOH . G 4 HOH A 48 212 99 HOH HOH . G 4 HOH A 49 213 100 HOH HOH . G 4 HOH A 50 214 103 HOH HOH . G 4 HOH A 51 215 107 HOH HOH . G 4 HOH A 52 216 111 HOH HOH . G 4 HOH A 53 217 112 HOH HOH . G 4 HOH A 54 218 114 HOH HOH . G 4 HOH A 55 219 119 HOH HOH . G 4 HOH A 56 220 123 HOH HOH . G 4 HOH A 57 221 124 HOH HOH . G 4 HOH A 58 222 127 HOH HOH . G 4 HOH A 59 223 131 HOH HOH . G 4 HOH A 60 224 132 HOH HOH . G 4 HOH A 61 225 133 HOH HOH . G 4 HOH A 62 226 135 HOH HOH . G 4 HOH A 63 227 139 HOH HOH . G 4 HOH A 64 228 141 HOH HOH . G 4 HOH A 65 229 143 HOH HOH . G 4 HOH A 66 230 145 HOH HOH . G 4 HOH A 67 231 146 HOH HOH . G 4 HOH A 68 232 147 HOH HOH . G 4 HOH A 69 233 149 HOH HOH . G 4 HOH A 70 234 151 HOH HOH . G 4 HOH A 71 235 152 HOH HOH . G 4 HOH A 72 236 153 HOH HOH . G 4 HOH A 73 237 154 HOH HOH . G 4 HOH A 74 238 155 HOH HOH . G 4 HOH A 75 239 156 HOH HOH . G 4 HOH A 76 240 157 HOH HOH . G 4 HOH A 77 241 158 HOH HOH . G 4 HOH A 78 242 159 HOH HOH . G 4 HOH A 79 243 160 HOH HOH . H 4 HOH B 1 163 163 HOH HOH . H 4 HOH B 2 164 1 HOH HOH . H 4 HOH B 3 165 3 HOH HOH . H 4 HOH B 4 166 166 HOH HOH . H 4 HOH B 5 167 167 HOH HOH . H 4 HOH B 6 168 4 HOH HOH . H 4 HOH B 7 169 169 HOH HOH . H 4 HOH B 8 170 170 HOH HOH . H 4 HOH B 9 171 6 HOH HOH . H 4 HOH B 10 172 11 HOH HOH . H 4 HOH B 11 173 14 HOH HOH . H 4 HOH B 12 174 16 HOH HOH . H 4 HOH B 13 175 17 HOH HOH . H 4 HOH B 14 176 19 HOH HOH . H 4 HOH B 15 177 21 HOH HOH . H 4 HOH B 16 178 22 HOH HOH . H 4 HOH B 17 179 23 HOH HOH . H 4 HOH B 18 180 24 HOH HOH . H 4 HOH B 19 181 27 HOH HOH . H 4 HOH B 20 182 30 HOH HOH . H 4 HOH B 21 183 31 HOH HOH . H 4 HOH B 22 184 35 HOH HOH . H 4 HOH B 23 185 42 HOH HOH . H 4 HOH B 24 186 43 HOH HOH . H 4 HOH B 25 187 45 HOH HOH . H 4 HOH B 26 188 46 HOH HOH . H 4 HOH B 27 189 49 HOH HOH . H 4 HOH B 28 190 52 HOH HOH . H 4 HOH B 29 191 54 HOH HOH . H 4 HOH B 30 192 58 HOH HOH . H 4 HOH B 31 193 60 HOH HOH . H 4 HOH B 32 194 63 HOH HOH . H 4 HOH B 33 195 64 HOH HOH . H 4 HOH B 34 196 67 HOH HOH . H 4 HOH B 35 197 68 HOH HOH . H 4 HOH B 36 198 73 HOH HOH . H 4 HOH B 37 199 75 HOH HOH . H 4 HOH B 38 200 76 HOH HOH . H 4 HOH B 39 201 77 HOH HOH . H 4 HOH B 40 202 78 HOH HOH . H 4 HOH B 41 203 79 HOH HOH . H 4 HOH B 42 204 83 HOH HOH . H 4 HOH B 43 205 87 HOH HOH . H 4 HOH B 44 206 90 HOH HOH . H 4 HOH B 45 209 92 HOH HOH . H 4 HOH B 46 210 101 HOH HOH . H 4 HOH B 47 211 102 HOH HOH . H 4 HOH B 48 212 104 HOH HOH . H 4 HOH B 49 213 109 HOH HOH . H 4 HOH B 50 214 125 HOH HOH . H 4 HOH B 51 215 126 HOH HOH . H 4 HOH B 52 216 130 HOH HOH . H 4 HOH B 53 217 137 HOH HOH . H 4 HOH B 54 218 140 HOH HOH . H 4 HOH B 55 219 142 HOH HOH . H 4 HOH B 56 220 144 HOH HOH . H 4 HOH B 57 221 148 HOH HOH . H 4 HOH B 58 222 150 HOH HOH . H 4 HOH B 59 223 161 HOH HOH . H 4 HOH B 60 224 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 5WB . . . D 3 42.064 21.918 5.503 1 27.36 ? N1 5WB 208 A 1 HETATM 2 C C2 5WB . . . D 3 41.874 21.467 4.262 1 27.21 ? C2 5WB 208 A 1 HETATM 3 N N3 5WB . . . D 3 42.371 22.136 3.209 1 27.49 ? N3 5WB 208 A 1 HETATM 4 C C4 5WB . . . D 3 43.066 23.271 3.374 1 27.51 ? C4 5WB 208 A 1 HETATM 5 C C5 5WB . . . D 3 43.273 23.756 4.66 1 27.92 ? C5 5WB 208 A 1 HETATM 6 C C6 5WB . . . D 3 42.747 23.045 5.739 1 27.66 ? C6 5WB 208 A 1 HETATM 7 C C1A 5WB . . . D 3 48.28 23.437 8.163 1 32.53 ? C1A 5WB 208 A 1 HETATM 8 C C1B 5WB . . . D 3 46.017 29.671 9.775 1 31.49 ? C1B 5WB 208 A 1 HETATM 9 C C1C 5WB . . . D 3 49.746 26.773 10.018 1 32.62 ? C1C 5WB 208 A 1 HETATM 10 C C1D 5WB . . . D 3 43.327 28.266 6.253 1 29.74 ? C1D 5WB 208 A 1 HETATM 11 C C1E 5WB . . . D 3 42.933 23.518 7.186 1 27.22 ? C1E 5WB 208 A 1 HETATM 12 N N1F 5WB . . . D 3 41.194 20.342 4.083 1 27.48 ? N1F 5WB 208 A 1 HETATM 13 N N1G 5WB . . . D 3 43.546 23.929 2.327 1 27.34 ? N1G 5WB 208 A 1 HETATM 14 C C1H 5WB . . . D 3 44.009 24.962 4.863 1 27.51 ? C1H 5WB 208 A 1 HETATM 15 C C1I 5WB . . . D 3 44.629 25.98 5.062 1 28.13 ? C1I 5WB 208 A 1 HETATM 16 C C1J 5WB . . . D 3 47.149 25.974 6.683 1 31.69 ? C1J 5WB 208 A 1 HETATM 17 C C1K 5WB . . . D 3 45.942 27.733 7.79 1 31.87 ? C1K 5WB 208 A 1 HETATM 18 O O1N 5WB . . . D 3 48.832 24.752 7.87 1 31.92 ? O1N 5WB 208 A 1 HETATM 19 O O1O 5WB . . . D 3 46.411 28.289 10.082 1 32.4 ? O1O 5WB 208 A 1 HETATM 20 O O1P 5WB . . . D 3 48.386 26.243 10.113 1 32.53 ? O1P 5WB 208 A 1 HETATM 21 O O1Q 5WB . . . D 3 44.503 28.4 5.434 1 29.85 ? O1Q 5WB 208 A 1 HETATM 22 C C1U 5WB . . . D 3 46.176 26.969 6.647 1 31.18 ? C1U 5WB 208 A 1 HETATM 23 C C1W 5WB . . . D 3 47.877 25.734 7.848 1 31.8 ? C1W 5WB 208 A 1 HETATM 24 C C1X 5WB . . . D 3 46.667 27.513 8.969 1 32.42 ? C1X 5WB 208 A 1 HETATM 25 C C1Y 5WB . . . D 3 47.645 26.502 8.99 1 31.57 ? C1Y 5WB 208 A 1 HETATM 26 C C1Z 5WB . . . D 3 45.375 27.215 5.354 1 29.26 ? C1Z 5WB 208 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #