data_3JWN # _model_server_result.job_id mdXP1jvNd1gOEcFeNrUe_g _model_server_result.datetime_utc '2025-02-05 12:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 3JWN # _exptl.entry_id 3JWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3JWN _cell.length_a 216.025 _cell.length_b 216.025 _cell.length_c 532.072 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,M,N,O 1 1 F,G,H,I,J,K,L,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 16 E CYS 16 1_555 B SG CYS 56 E CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 C SG CYS 16 F CYS 16 1_555 C SG CYS 56 F CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 D SG CYS 16 G CYS 16 1_555 D SG CYS 54 G CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 E SG CYS 3 H CYS 3 1_555 E SG CYS 44 H CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 E SG CYS 161 H CYS 161 1_555 E SG CYS 187 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 G SG CYS 16 K CYS 16 1_555 G SG CYS 56 K CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 H SG CYS 16 L CYS 16 1_555 H SG CYS 56 L CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 I SG CYS 16 M CYS 16 1_555 I SG CYS 54 M CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf9 J SG CYS 3 N CYS 3 1_555 J SG CYS 44 N CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 J SG CYS 161 N CYS 161 1_555 J SG CYS 187 N CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3JWN _atom_sites.fract_transf_matrix[1][1] 0.004629 _atom_sites.fract_transf_matrix[1][2] 0.002673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 GOL N 1 301 301 GOL GOL . L 5 GOL N 1 302 302 GOL GOL . M 6 HOH C 1 510 510 HOH HOH . M 6 HOH C 2 521 521 HOH HOH . M 6 HOH C 3 522 522 HOH HOH . N 6 HOH E 1 501 501 HOH HOH . O 6 HOH H 1 511 511 HOH HOH . O 6 HOH H 2 512 512 HOH HOH . O 6 HOH H 3 527 527 HOH HOH . P 6 HOH I 1 520 520 HOH HOH . P 6 HOH I 2 528 528 HOH HOH . Q 6 HOH L 1 525 525 HOH HOH . R 6 HOH M 1 504 504 HOH HOH . R 6 HOH M 2 524 524 HOH HOH . S 6 HOH N 1 502 502 HOH HOH . S 6 HOH N 2 503 503 HOH HOH . S 6 HOH N 3 505 505 HOH HOH . S 6 HOH N 4 506 506 HOH HOH . S 6 HOH N 5 507 507 HOH HOH . S 6 HOH N 6 508 508 HOH HOH . S 6 HOH N 7 509 509 HOH HOH . S 6 HOH N 8 513 513 HOH HOH . S 6 HOH N 9 514 514 HOH HOH . S 6 HOH N 10 515 515 HOH HOH . S 6 HOH N 11 516 516 HOH HOH . S 6 HOH N 12 517 517 HOH HOH . S 6 HOH N 13 518 518 HOH HOH . S 6 HOH N 14 519 519 HOH HOH . S 6 HOH N 15 523 523 HOH HOH . S 6 HOH N 16 526 526 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 -63.865 -12.39 159.083 1 62.61 ? C1 GOL 301 N 1 HETATM 2 O O1 GOL . . . K 5 -62.676 -11.978 158.442 1 62.59 ? O1 GOL 301 N 1 HETATM 3 C C2 GOL . . . K 5 -63.558 -13.504 160.083 1 62.29 ? C2 GOL 301 N 1 HETATM 4 O O2 GOL . . . K 5 -64.714 -13.874 160.801 1 61.86 ? O2 GOL 301 N 1 HETATM 5 C C3 GOL . . . K 5 -63.031 -14.726 159.349 1 62.06 ? C3 GOL 301 N 1 HETATM 6 O O3 GOL . . . K 5 -63.054 -15.836 160.217 1 62.12 ? O3 GOL 301 N 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #