data_3JWP # _model_server_result.job_id jI55yipNvjsT4Z_7vJHGvg _model_server_result.datetime_utc '2024-11-05 00:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":266}' # _entry.id 3JWP # _exptl.entry_id 3JWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3JWP _cell.length_a 106.564 _cell.length_b 106.564 _cell.length_c 44.968 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -53.282 92.287131 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -106.564 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 144 A ILE 144 1_555 A N MSE 145 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 145 A MSE 145 1_555 A N LEU 146 A LEU 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 152 A PHE 152 1_555 A N MSE 153 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 153 A MSE 153 1_555 A N HIS 154 A HIS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 234 A LYS 234 1_555 A N MSE 235 A MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C MSE 235 A MSE 235 1_555 A N SER 236 A SER 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 132 A CYS 132 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A SG CYS 135 A CYS 135 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A SG CYS 160 A CYS 160 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 A SG CYS 162 A CYS 162 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3JWP _atom_sites.fract_transf_matrix[1][1] 0.009384 _atom_sites.fract_transf_matrix[1][2] 0.005418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 266 266 AMP AMP . C 3 ZN A 1 2001 2001 ZN ZN . D 4 PGE A 1 267 267 PGE PGE . E 5 HOH A 1 268 268 HOH HOH . E 5 HOH A 2 269 269 HOH HOH . E 5 HOH A 3 270 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -42.146 16.736 -14.292 1 64.93 ? P AMP 266 A 1 HETATM 2 O O1P AMP . . . B 2 -41.136 17.559 -15.053 1 65.41 ? O1P AMP 266 A 1 HETATM 3 O O2P AMP . . . B 2 -41.937 16.723 -12.789 1 65.63 ? O2P AMP 266 A 1 HETATM 4 O O3P AMP . . . B 2 -43.573 16.97 -14.737 1 64.4 ? O3P AMP 266 A 1 HETATM 5 O O5' AMP . . . B 2 -41.863 15.22 -14.709 1 63.77 ? O5' AMP 266 A 1 HETATM 6 C C5' AMP . . . B 2 -40.777 14.493 -14.154 1 63.07 ? C5' AMP 266 A 1 HETATM 7 C C4' AMP . . . B 2 -40.635 13.21 -14.953 1 63.1 ? C4' AMP 266 A 1 HETATM 8 O O4' AMP . . . B 2 -39.285 12.792 -14.895 1 62.8 ? O4' AMP 266 A 1 HETATM 9 C C3' AMP . . . B 2 -41.479 12.054 -14.441 1 63.48 ? C3' AMP 266 A 1 HETATM 10 O O3' AMP . . . B 2 -42.291 11.551 -15.508 1 63.38 ? O3' AMP 266 A 1 HETATM 11 C C2' AMP . . . B 2 -40.476 11.018 -13.958 1 63.42 ? C2' AMP 266 A 1 HETATM 12 O O2' AMP . . . B 2 -40.881 9.678 -14.234 1 64.05 ? O2' AMP 266 A 1 HETATM 13 C C1' AMP . . . B 2 -39.228 11.377 -14.735 1 63.35 ? C1' AMP 266 A 1 HETATM 14 N N9 AMP . . . B 2 -37.924 11.066 -14.104 1 63.93 ? N9 AMP 266 A 1 HETATM 15 C C8 AMP . . . B 2 -37.55 11.185 -12.804 1 64.37 ? C8 AMP 266 A 1 HETATM 16 N N7 AMP . . . B 2 -36.241 10.836 -12.648 1 64.2 ? N7 AMP 266 A 1 HETATM 17 C C5 AMP . . . B 2 -35.771 10.503 -13.868 1 63.74 ? C5 AMP 266 A 1 HETATM 18 C C6 AMP . . . B 2 -34.491 10.046 -14.446 1 63.18 ? C6 AMP 266 A 1 HETATM 19 N N6 AMP . . . B 2 -33.404 9.856 -13.676 1 63.32 ? N6 AMP 266 A 1 HETATM 20 N N1 AMP . . . B 2 -34.444 9.818 -15.78 1 63.41 ? N1 AMP 266 A 1 HETATM 21 C C2 AMP . . . B 2 -35.504 9.988 -16.595 1 62.52 ? C2 AMP 266 A 1 HETATM 22 N N3 AMP . . . B 2 -36.694 10.398 -16.137 1 63.02 ? N3 AMP 266 A 1 HETATM 23 C C4 AMP . . . B 2 -36.881 10.666 -14.82 1 63.52 ? C4 AMP 266 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #