data_3JWP # _model_server_result.job_id Ly6RNjiWC55E3XG88Bhmyg _model_server_result.datetime_utc '2025-04-12 10:03:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":267}' # _entry.id 3JWP # _exptl.entry_id 3JWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3JWP _cell.length_a 106.564 _cell.length_b 106.564 _cell.length_c 44.968 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -53.282 92.287131 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -106.564 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 144 A ILE 144 1_555 A N MSE 145 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 145 A MSE 145 1_555 A N LEU 146 A LEU 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 152 A PHE 152 1_555 A N MSE 153 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 153 A MSE 153 1_555 A N HIS 154 A HIS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 234 A LYS 234 1_555 A N MSE 235 A MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C MSE 235 A MSE 235 1_555 A N SER 236 A SER 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 132 A CYS 132 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A SG CYS 135 A CYS 135 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A SG CYS 160 A CYS 160 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 A SG CYS 162 A CYS 162 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 276 n n C1 C2 PGE sing 277 n n C1 H1 PGE sing 278 n n C1 H12 PGE sing 279 n n O1 HO1 PGE sing 280 n n C2 O2 PGE sing 281 n n C2 H2 PGE sing 282 n n C2 H22 PGE sing 283 n n O2 C3 PGE sing 284 n n C3 C4 PGE sing 285 n n C3 H3 PGE sing 286 n n C3 H32 PGE sing 287 n n C4 O3 PGE sing 288 n n C4 H4 PGE sing 289 n n C4 H42 PGE sing 290 n n O4 C6 PGE sing 291 n n O4 HO4 PGE sing 292 n n C6 C5 PGE sing 293 n n C6 H6 PGE sing 294 n n C6 H62 PGE sing 295 n n C5 O3 PGE sing 296 n n C5 H5 PGE sing 297 n n C5 H52 PGE sing 298 n n # _atom_sites.entry_id 3JWP _atom_sites.fract_transf_matrix[1][1] 0.009384 _atom_sites.fract_transf_matrix[1][2] 0.005418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 266 266 AMP AMP . C 3 ZN A 1 2001 2001 ZN ZN . D 4 PGE A 1 267 267 PGE PGE . E 5 HOH A 1 268 268 HOH HOH . E 5 HOH A 2 269 269 HOH HOH . E 5 HOH A 3 270 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 -39.073 26.554 -6.737 1 70.67 ? C1 PGE 267 A 1 HETATM 2 O O1 PGE . . . D 4 -37.746 27.109 -6.705 1 69.65 ? O1 PGE 267 A 1 HETATM 3 C C2 PGE . . . D 4 -40.088 27.504 -7.411 1 70.98 ? C2 PGE 267 A 1 HETATM 4 O O2 PGE . . . D 4 -40.753 26.815 -8.499 1 71.74 ? O2 PGE 267 A 1 HETATM 5 C C3 PGE . . . D 4 -42.166 27.09 -8.58 1 72.34 ? C3 PGE 267 A 1 HETATM 6 C C4 PGE . . . D 4 -42.812 26.141 -9.605 1 72.74 ? C4 PGE 267 A 1 HETATM 7 O O4 PGE . . . D 4 -45.757 25.373 -13.271 1 73.99 ? O4 PGE 267 A 1 HETATM 8 C C6 PGE . . . D 4 -45.215 26.463 -12.509 1 74.27 ? C6 PGE 267 A 1 HETATM 9 C C5 PGE . . . D 4 -44.045 25.959 -11.641 1 74.18 ? C5 PGE 267 A 1 HETATM 10 O O3 PGE . . . D 4 -43.73 26.821 -10.506 1 73.71 ? O3 PGE 267 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #