data_3JWQ
#
_model_server_result.job_id            889htlFfLrf6qiZaMNoiFg 
_model_server_result.datetime_utc      '2024-11-17 15:53:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jwq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":901}' 
#
_entry.id    3JWQ 
#
_exptl.entry_id    3JWQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.576 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{2-ETHOXY-5-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-1-METHYL-3-PROPYL-1H,6H,7H-PYRAZOLO[4,3-D]PYRIMIDIN-7-ONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JWQ 
_cell.length_a            75.732 
_cell.length_b            109.825 
_cell.length_c            199.668 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JWQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Q 1 1 
B,H,I,J,R 2 1 
C,K,L,M,S 3 1 
D,N,O,P,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 Q O HOH . A HOH 4 1_555 F MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc2 Q O HOH . A HOH 6 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc3 Q O HOH . A HOH 7 1_555 F MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc4 A NE2 HIS 87 A HIS 617 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc5 A NE2 HIS 123 A HIS 653 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 A OD2 ASP 124 A ASP 654 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc7 A OD1 ASP 124 A ASP 654 1_555 F MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc8 A OD1 ASP 234 A ASP 764 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc9 R O HOH . B HOH 1 1_555 I MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc10 R O HOH . B HOH 11 1_555 I MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc11 R O HOH . B HOH 12 1_555 I MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc12 B NE2 HIS 87 B HIS 617 1_555 H ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc13 B NE2 HIS 123 B HIS 653 1_555 H ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc14 B OD2 ASP 124 B ASP 654 1_555 H ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc15 B OD1 ASP 234 B ASP 764 1_555 H ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc16 S O HOH . C HOH 3 1_555 L MG MG . C MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc17 S O HOH . C HOH 14 1_555 L MG MG . C MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc18 C NE2 HIS 87 C HIS 617 1_555 K ZN ZN . C ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc19 C NE2 HIS 123 C HIS 653 1_555 K ZN ZN . C ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc20 C OD2 ASP 124 C ASP 654 1_555 K ZN ZN . C ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc21 C OD1 ASP 234 C ASP 764 1_555 K ZN ZN . C ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc22 T O HOH . D HOH 5 1_555 O MG MG . D MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc23 D NE2 HIS 87 D HIS 617 1_555 N ZN ZN . D ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc24 D NE2 HIS 123 D HIS 653 1_555 N ZN ZN . D ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc25 D OD2 ASP 124 D ASP 654 1_555 N ZN ZN . D ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc26 D OD1 ASP 234 D ASP 764 1_555 N ZN ZN . D ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C22 H30 N6 O4 S' 
_chem_comp.formula_weight    474.576 
_chem_comp.id                VIA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{2-ETHOXY-5-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-1-METHYL-3-PROPYL-1H,6H,7H-PYRAZOLO[4,3-D]PYRIMIDIN-7-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SILDENAFIL;VIAGRA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C33 VIA sing 376 n n 
C34 H341 VIA sing 377 n n 
C34 H342 VIA sing 378 n n 
C34 H343 VIA sing 379 n n 
C33 C32 VIA sing 380 n n 
C33 H331 VIA sing 381 n n 
C33 H332 VIA sing 382 n n 
C32 C30 VIA sing 383 n n 
C32 H321 VIA sing 384 n n 
C32 H322 VIA sing 385 n n 
C30 N29 VIA doub 386 n y 
C30 C25 VIA sing 387 n y 
N29 N28 VIA sing 388 n y 
N28 C31 VIA sing 389 n n 
N28 C24 VIA sing 390 n y 
C31 H311 VIA sing 391 n n 
C31 H312 VIA sing 392 n n 
C31 H313 VIA sing 393 n n 
C24 C23 VIA sing 394 n y 
C24 C25 VIA doub 395 n y 
C23 O27 VIA doub 396 n n 
C23 N22 VIA sing 397 n y 
N22 C21 VIA sing 398 n y 
N22 H22 VIA sing 399 n n 
C21 N26 VIA doub 400 n y 
C21 C9 VIA sing 401 n y 
N26 C25 VIA sing 402 n y 
C9 C8 VIA doub 403 n y 
C9 C4 VIA sing 404 n y 
C8 C7 VIA sing 405 n y 
C8 H8 VIA sing 406 n n 
C7 C6 VIA doub 407 n y 
C7 S10 VIA sing 408 n n 
C6 C5 VIA sing 409 n y 
C6 H6 VIA sing 410 n n 
C5 C4 VIA doub 411 n y 
C5 H5 VIA sing 412 n n 
C4 O3 VIA sing 413 n n 
O3 C2 VIA sing 414 n n 
C2 C1 VIA sing 415 n n 
C2 H21 VIA sing 416 n n 
C2 H22A VIA sing 417 n n 
C1 H11 VIA sing 418 n n 
C1 H12 VIA sing 419 n n 
C1 H13 VIA sing 420 n n 
S10 O11 VIA doub 421 n n 
S10 O12 VIA doub 422 n n 
S10 N14 VIA sing 423 n n 
N14 C19 VIA sing 424 n n 
N14 C15 VIA sing 425 n n 
C19 C18 VIA sing 426 n n 
C19 H191 VIA sing 427 n n 
C19 H192 VIA sing 428 n n 
C18 N17 VIA sing 429 n n 
C18 H181 VIA sing 430 n n 
C18 H182 VIA sing 431 n n 
N17 C20 VIA sing 432 n n 
N17 C16 VIA sing 433 n n 
C20 H201 VIA sing 434 n n 
C20 H202 VIA sing 435 n n 
C20 H203 VIA sing 436 n n 
C16 C15 VIA sing 437 n n 
C16 H161 VIA sing 438 n n 
C16 H162 VIA sing 439 n n 
C15 H151 VIA sing 440 n n 
C15 H152 VIA sing 441 n n 
#
_atom_sites.entry_id                     3JWQ 
_atom_sites.fract_transf_matrix[1][1]    0.013204 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 899 899 ZN ZN . 
F 3 MG A 1 900 900 MG MG . 
G 4 VIA A 1 901 901 VIA VIA . 
H 2 ZN B 1 899 899 ZN ZN . 
I 3 MG B 1 900 900 MG MG . 
J 4 VIA B 1 901 901 VIA VIA . 
K 2 ZN C 1 899 899 ZN ZN . 
L 3 MG C 1 900 900 MG MG . 
M 4 VIA C 1 901 901 VIA VIA . 
N 2 ZN D 1 899 899 ZN ZN . 
O 3 MG D 1 900 900 MG MG . 
P 4 VIA D 1 901 901 VIA VIA . 
Q 5 HOH A 1 4 4 HOH HOH . 
Q 5 HOH A 2 6 6 HOH HOH . 
Q 5 HOH A 3 7 7 HOH HOH . 
Q 5 HOH A 4 8 8 HOH HOH . 
Q 5 HOH A 5 9 9 HOH HOH . 
Q 5 HOH A 6 10 10 HOH HOH . 
R 5 HOH B 1 1 1 HOH HOH . 
R 5 HOH B 2 11 11 HOH HOH . 
R 5 HOH B 3 12 12 HOH HOH . 
S 5 HOH C 1 3 3 HOH HOH . 
S 5 HOH C 2 13 13 HOH HOH . 
S 5 HOH C 3 14 14 HOH HOH . 
T 5 HOH D 1 5 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C34 VIA . . . M 4 6.57 -63.312 12.072 1 63.32 ? C34 VIA 901 C 1 
HETATM 2 C C33 VIA . . . M 4 6.595 -64.426 11.019 1 62.04 ? C33 VIA 901 C 1 
HETATM 3 C C32 VIA . . . M 4 6.954 -65.772 11.645 1 62.25 ? C32 VIA 901 C 1 
HETATM 4 C C30 VIA . . . M 4 8.052 -66.482 10.847 1 62.9 ? C30 VIA 901 C 1 
HETATM 5 N N29 VIA . . . M 4 7.979 -66.935 9.593 1 63.67 ? N29 VIA 901 C 1 
HETATM 6 N N28 VIA . . . M 4 9.05 -67.463 9.264 1 63.96 ? N28 VIA 901 C 1 
HETATM 7 C C31 VIA . . . M 4 9.256 -68.066 7.917 1 64.3 ? C31 VIA 901 C 1 
HETATM 8 C C24 VIA . . . M 4 9.961 -67.423 10.245 1 63.44 ? C24 VIA 901 C 1 
HETATM 9 C C23 VIA . . . M 4 11.293 -67.858 10.395 1 63.81 ? C23 VIA 901 C 1 
HETATM 10 O O27 VIA . . . M 4 11.925 -68.449 9.505 1 61.97 ? O27 VIA 901 C 1 
HETATM 11 N N22 VIA . . . M 4 11.909 -67.608 11.641 1 63.74 ? N22 VIA 901 C 1 
HETATM 12 C C21 VIA . . . M 4 11.192 -66.928 12.656 1 64.58 ? C21 VIA 901 C 1 
HETATM 13 N N26 VIA . . . M 4 9.919 -66.539 12.475 1 63.63 ? N26 VIA 901 C 1 
HETATM 14 C C25 VIA . . . M 4 9.318 -66.776 11.303 1 62.91 ? C25 VIA 901 C 1 
HETATM 15 C C9 VIA . . . M 4 11.828 -66.749 13.868 1 65.81 ? C9 VIA 901 C 1 
HETATM 16 C C8 VIA . . . M 4 11.177 -67.156 15.027 1 67.72 ? C8 VIA 901 C 1 
HETATM 17 C C7 VIA . . . M 4 11.781 -67.048 16.268 1 70.12 ? C7 VIA 901 C 1 
HETATM 18 C C6 VIA . . . M 4 13.077 -66.543 16.331 1 68.07 ? C6 VIA 901 C 1 
HETATM 19 C C5 VIA . . . M 4 13.741 -66.135 15.167 1 66.48 ? C5 VIA 901 C 1 
HETATM 20 C C4 VIA . . . M 4 13.112 -66.244 13.922 1 65.77 ? C4 VIA 901 C 1 
HETATM 21 O O3 VIA . . . M 4 13.685 -65.884 12.739 1 65.02 ? O3 VIA 901 C 1 
HETATM 22 C C2 VIA . . . M 4 14.59 -64.77 12.793 1 65.08 ? C2 VIA 901 C 1 
HETATM 23 C C1 VIA . . . M 4 15.63 -65.017 11.696 1 64.55 ? C1 VIA 901 C 1 
HETATM 24 S S10 VIA . . . M 4 10.886 -67.596 17.7 1 74.46 ? S10 VIA 901 C 1 
HETATM 25 O O11 VIA . . . M 4 9.95 -68.662 17.22 1 73.58 ? O11 VIA 901 C 1 
HETATM 26 O O12 VIA . . . M 4 11.867 -68.205 18.643 1 74.27 ? O12 VIA 901 C 1 
HETATM 27 N N14 VIA . . . M 4 9.929 -66.356 18.488 1 76.89 ? N14 VIA 901 C 1 
HETATM 28 C C19 VIA . . . M 4 10.449 -65.868 19.802 1 77.24 ? C19 VIA 901 C 1 
HETATM 29 C C18 VIA . . . M 4 9.628 -64.645 20.307 1 78.31 ? C18 VIA 901 C 1 
HETATM 30 N N17 VIA . . . M 4 8.141 -64.775 20.13 1 79.51 ? N17 VIA 901 C 1 
HETATM 31 C C20 VIA . . . M 4 7.524 -63.615 19.436 1 79.25 ? C20 VIA 901 C 1 
HETATM 32 C C16 VIA . . . M 4 7.585 -66.077 19.647 1 78.8 ? C16 VIA 901 C 1 
HETATM 33 C C15 VIA . . . M 4 8.484 -66.803 18.587 1 78.64 ? C15 VIA 901 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#