data_3JWR # _model_server_result.job_id Cu6iNnwmcf1iC5klbEQFYg _model_server_result.datetime_utc '2024-11-17 17:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 3JWR # _exptl.entry_id 3JWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.244 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-ISOBUTYL-1-METHYLXANTHINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JWR _cell.length_a 47.257 _cell.length_b 125.651 _cell.length_c 153.854 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,N 1 1 B,D,J,K,L,M,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 147 A CYS 677 1_555 B SG CYS 147 B CYS 677 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A NE2 HIS 123 A HIS 653 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A OD2 ASP 124 A ASP 654 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 A OD2 ASP 234 A ASP 764 1_555 E ZN ZN . A ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 O O HOH . B HOH 11 1_555 K MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 O O HOH . B HOH 12 1_555 J ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc6 O O HOH . B HOH 12 1_555 K MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 O O HOH . B HOH 15 1_555 K MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc8 O O HOH . B HOH 16 1_555 K MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc9 B NE2 HIS 87 B HIS 617 1_555 J ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc10 B NE2 HIS 123 B HIS 653 1_555 J ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 B OD2 ASP 124 B ASP 654 1_555 J ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc12 B OD2 ASP 234 B ASP 764 1_555 J ZN ZN . B ZN 899 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C10 H14 N4 O2' _chem_comp.formula_weight 222.244 _chem_comp.id IBM _chem_comp.mon_nstd_flag . _chem_comp.name 3-ISOBUTYL-1-METHYLXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 IBM sing 152 n y N9 C4 IBM sing 153 n y N9 HN9 IBM sing 154 n n C8 N7 IBM doub 155 n y C8 H8 IBM sing 156 n n N7 C5 IBM sing 157 n y C5 C4 IBM doub 158 n y C5 C6 IBM sing 159 n y C4 N3 IBM sing 160 n y N3 C2 IBM sing 161 n y N3 C11 IBM sing 162 n n C2 N1 IBM sing 163 n y C2 O2 IBM doub 164 n n N1 C6 IBM sing 165 n y N1 C10 IBM sing 166 n n C6 O6 IBM doub 167 n n C10 H101 IBM sing 168 n n C10 H102 IBM sing 169 n n C10 H103 IBM sing 170 n n C11 C12 IBM sing 171 n n C11 H111 IBM sing 172 n n C11 H112 IBM sing 173 n n C12 C13 IBM sing 174 n n C12 C14 IBM sing 175 n n C12 H12 IBM sing 176 n n C13 H131 IBM sing 177 n n C13 H132 IBM sing 178 n n C13 H133 IBM sing 179 n n C14 H141 IBM sing 180 n n C14 H142 IBM sing 181 n n C14 H143 IBM sing 182 n n # _atom_sites.entry_id 3JWR _atom_sites.fract_transf_matrix[1][1] 0.021161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 899 899 ZN ZN . F 4 MG A 1 900 900 MG MG . G 5 IBM A 1 901 901 IBM IBM . H 5 IBM A 1 902 902 IBM IBM . I 5 IBM A 1 903 903 IBM IBM . J 3 ZN B 1 899 899 ZN ZN . K 4 MG B 1 900 900 MG MG . L 5 IBM B 1 901 901 IBM IBM . M 5 IBM B 1 902 902 IBM IBM . N 6 HOH A 1 2 2 HOH HOH . N 6 HOH A 2 4 4 HOH HOH . N 6 HOH A 3 5 5 HOH HOH . N 6 HOH A 4 6 6 HOH HOH . N 6 HOH A 5 7 7 HOH HOH . O 6 HOH B 1 3 3 HOH HOH . O 6 HOH B 2 8 8 HOH HOH . O 6 HOH B 3 9 9 HOH HOH . O 6 HOH B 4 10 10 HOH HOH . O 6 HOH B 5 11 11 HOH HOH . O 6 HOH B 6 12 12 HOH HOH . O 6 HOH B 7 14 14 HOH HOH . O 6 HOH B 8 15 15 HOH HOH . O 6 HOH B 9 16 16 HOH HOH . O 6 HOH B 10 17 17 HOH HOH . O 6 HOH B 11 18 18 HOH HOH . P 6 HOH D 1 1 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 IBM . . . G 5 -22.818 13.641 -39.376 1 40.09 ? N9 IBM 901 A 1 HETATM 2 C C8 IBM . . . G 5 -22.876 14.256 -40.578 1 36.94 ? C8 IBM 901 A 1 HETATM 3 N N7 IBM . . . G 5 -23.151 13.352 -41.55 1 29.3 ? N7 IBM 901 A 1 HETATM 4 C C5 IBM . . . G 5 -23.273 12.146 -40.963 1 39.87 ? C5 IBM 901 A 1 HETATM 5 C C4 IBM . . . G 5 -23.067 12.337 -39.617 1 47.65 ? C4 IBM 901 A 1 HETATM 6 N N3 IBM . . . G 5 -23.13 11.327 -38.736 1 48.37 ? N3 IBM 901 A 1 HETATM 7 C C2 IBM . . . G 5 -23.379 10.069 -39.16 1 49.82 ? C2 IBM 901 A 1 HETATM 8 N N1 IBM . . . G 5 -23.591 9.785 -40.465 1 62.69 ? N1 IBM 901 A 1 HETATM 9 C C6 IBM . . . G 5 -23.555 10.753 -41.407 1 48.78 ? C6 IBM 901 A 1 HETATM 10 O O6 IBM . . . G 5 -23.755 10.497 -42.618 1 38.31 ? O6 IBM 901 A 1 HETATM 11 O O2 IBM . . . G 5 -23.435 9.135 -38.323 1 43.62 ? O2 IBM 901 A 1 HETATM 12 C C10 IBM . . . G 5 -23.87 8.393 -40.845 1 53.38 ? C10 IBM 901 A 1 HETATM 13 C C11 IBM . . . G 5 -22.902 11.575 -37.31 1 57.68 ? C11 IBM 901 A 1 HETATM 14 C C12 IBM . . . G 5 -24.067 12.353 -36.697 1 48.67 ? C12 IBM 901 A 1 HETATM 15 C C13 IBM . . . G 5 -24.474 11.725 -35.366 1 58.15 ? C13 IBM 901 A 1 HETATM 16 C C14 IBM . . . G 5 -23.727 13.828 -36.516 1 30.95 ? C14 IBM 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #