data_3JY9 # _model_server_result.job_id Air4ZEBHdyCPdq5B5j_bpQ _model_server_result.datetime_utc '2025-07-03 20:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3JY9 # _exptl.entry_id 3JY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.363 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-(4-hydroxyphenyl)-1,5-dihydro-1,5,12-triazabenzo[4,5]cycloocta[1,2,3-cd]inden-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JY9 _cell.length_a 95.103 _cell.length_b 101.257 _cell.length_c 68.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 187 A GLU 1006 1_555 A N PTR 188 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C PTR 188 A PTR 1007 1_555 A N PTR 189 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C PTR 189 A PTR 1008 1_555 A N LYS 190 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C21 H15 N3 O2' _chem_comp.formula_weight 341.363 _chem_comp.id JZH _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-(4-hydroxyphenyl)-1,5-dihydro-1,5,12-triazabenzo[4,5]cycloocta[1,2,3-cd]inden-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 JZH sing 173 n n C2 C3 JZH doub 174 n y C2 C7 JZH sing 175 n y C3 C4 JZH sing 176 n y C4 C5 JZH doub 177 n y C5 C6 JZH sing 178 n y C5 C8 JZH sing 179 n n C6 C7 JZH doub 180 n y C8 C9 JZH sing 181 n n C8 C26 JZH sing 182 n n C9 O10 JZH doub 183 n n C9 N11 JZH sing 184 n n N11 C12 JZH sing 185 n n C12 C13 JZH doub 186 n y C12 C17 JZH sing 187 n y C13 C14 JZH sing 188 n y C14 C15 JZH doub 189 n y C15 C16 JZH sing 190 n y C16 C17 JZH doub 191 n y C17 C18 JZH sing 192 n y C18 C19 JZH doub 193 n y C18 C27 JZH sing 194 n y C19 C20 JZH sing 195 n y C20 N21 JZH doub 196 n y N21 C22 JZH sing 197 n y C22 N23 JZH sing 198 n y C22 C27 JZH doub 199 n y N23 C25 JZH sing 200 n y C25 C26 JZH doub 201 n y C26 C27 JZH sing 202 n y O1 HO1 JZH sing 203 n n C3 H3 JZH sing 204 n n C4 H4 JZH sing 205 n n C6 H6 JZH sing 206 n n C7 H7 JZH sing 207 n n C8 H8 JZH sing 208 n n N11 HN11 JZH sing 209 n n C13 H13 JZH sing 210 n n C14 H14 JZH sing 211 n n C15 H15 JZH sing 212 n n C16 H16 JZH sing 213 n n C19 H19 JZH sing 214 n n C20 H20 JZH sing 215 n n N23 HN23 JZH sing 216 n n C25 H25 JZH sing 217 n n # _atom_sites.entry_id 3JY9 _atom_sites.fract_transf_matrix[1][1] 0.010515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JZH A 1 1 1 JZH JZH . C 3 NA A 1 1131 1 NA NA . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . D 4 HOH A 34 35 35 HOH HOH . D 4 HOH A 35 36 36 HOH HOH . D 4 HOH A 36 37 37 HOH HOH . D 4 HOH A 37 38 38 HOH HOH . D 4 HOH A 38 39 39 HOH HOH . D 4 HOH A 39 40 40 HOH HOH . D 4 HOH A 40 41 41 HOH HOH . D 4 HOH A 41 42 42 HOH HOH . D 4 HOH A 42 43 43 HOH HOH . D 4 HOH A 43 44 44 HOH HOH . D 4 HOH A 44 45 45 HOH HOH . D 4 HOH A 45 46 46 HOH HOH . D 4 HOH A 46 47 47 HOH HOH . D 4 HOH A 47 48 48 HOH HOH . D 4 HOH A 48 49 49 HOH HOH . D 4 HOH A 49 50 50 HOH HOH . D 4 HOH A 50 51 51 HOH HOH . D 4 HOH A 51 52 52 HOH HOH . D 4 HOH A 52 53 53 HOH HOH . D 4 HOH A 53 54 54 HOH HOH . D 4 HOH A 54 55 55 HOH HOH . D 4 HOH A 55 56 56 HOH HOH . D 4 HOH A 56 57 57 HOH HOH . D 4 HOH A 57 58 58 HOH HOH . D 4 HOH A 58 59 59 HOH HOH . D 4 HOH A 59 60 60 HOH HOH . D 4 HOH A 60 61 61 HOH HOH . D 4 HOH A 61 62 62 HOH HOH . D 4 HOH A 62 63 63 HOH HOH . D 4 HOH A 63 64 64 HOH HOH . D 4 HOH A 64 65 65 HOH HOH . D 4 HOH A 65 66 66 HOH HOH . D 4 HOH A 66 67 67 HOH HOH . D 4 HOH A 67 68 68 HOH HOH . D 4 HOH A 68 69 69 HOH HOH . D 4 HOH A 69 70 70 HOH HOH . D 4 HOH A 70 71 71 HOH HOH . D 4 HOH A 71 72 72 HOH HOH . D 4 HOH A 72 73 73 HOH HOH . D 4 HOH A 73 74 74 HOH HOH . D 4 HOH A 74 75 75 HOH HOH . D 4 HOH A 75 76 76 HOH HOH . D 4 HOH A 76 77 77 HOH HOH . D 4 HOH A 77 78 78 HOH HOH . D 4 HOH A 78 79 79 HOH HOH . D 4 HOH A 79 80 80 HOH HOH . D 4 HOH A 80 81 81 HOH HOH . D 4 HOH A 81 82 82 HOH HOH . D 4 HOH A 82 83 83 HOH HOH . D 4 HOH A 83 84 84 HOH HOH . D 4 HOH A 84 85 85 HOH HOH . D 4 HOH A 85 86 86 HOH HOH . D 4 HOH A 86 87 87 HOH HOH . D 4 HOH A 87 88 88 HOH HOH . D 4 HOH A 88 89 89 HOH HOH . D 4 HOH A 89 90 90 HOH HOH . D 4 HOH A 90 91 91 HOH HOH . D 4 HOH A 91 92 92 HOH HOH . D 4 HOH A 92 93 93 HOH HOH . D 4 HOH A 93 94 94 HOH HOH . D 4 HOH A 94 95 95 HOH HOH . D 4 HOH A 95 96 96 HOH HOH . D 4 HOH A 96 97 97 HOH HOH . D 4 HOH A 97 98 98 HOH HOH . D 4 HOH A 98 99 99 HOH HOH . D 4 HOH A 99 100 100 HOH HOH . D 4 HOH A 100 101 101 HOH HOH . D 4 HOH A 101 102 102 HOH HOH . D 4 HOH A 102 103 103 HOH HOH . D 4 HOH A 103 104 104 HOH HOH . D 4 HOH A 104 105 105 HOH HOH . D 4 HOH A 105 106 106 HOH HOH . D 4 HOH A 106 107 107 HOH HOH . D 4 HOH A 107 108 108 HOH HOH . D 4 HOH A 108 109 109 HOH HOH . D 4 HOH A 109 110 110 HOH HOH . D 4 HOH A 110 111 111 HOH HOH . D 4 HOH A 111 112 112 HOH HOH . D 4 HOH A 112 113 113 HOH HOH . D 4 HOH A 113 114 114 HOH HOH . D 4 HOH A 114 115 115 HOH HOH . D 4 HOH A 115 116 116 HOH HOH . D 4 HOH A 116 117 117 HOH HOH . D 4 HOH A 117 118 118 HOH HOH . D 4 HOH A 118 119 119 HOH HOH . D 4 HOH A 119 120 120 HOH HOH . D 4 HOH A 120 121 121 HOH HOH . D 4 HOH A 121 122 122 HOH HOH . D 4 HOH A 122 123 123 HOH HOH . D 4 HOH A 123 124 124 HOH HOH . D 4 HOH A 124 125 125 HOH HOH . D 4 HOH A 125 126 126 HOH HOH . D 4 HOH A 126 127 127 HOH HOH . D 4 HOH A 127 128 128 HOH HOH . D 4 HOH A 128 129 129 HOH HOH . D 4 HOH A 129 130 130 HOH HOH . D 4 HOH A 130 131 131 HOH HOH . D 4 HOH A 131 132 132 HOH HOH . D 4 HOH A 132 133 133 HOH HOH . D 4 HOH A 133 134 134 HOH HOH . D 4 HOH A 134 135 135 HOH HOH . D 4 HOH A 135 136 136 HOH HOH . D 4 HOH A 136 137 137 HOH HOH . D 4 HOH A 137 138 138 HOH HOH . D 4 HOH A 138 139 139 HOH HOH . D 4 HOH A 139 140 140 HOH HOH . D 4 HOH A 140 141 141 HOH HOH . D 4 HOH A 141 142 142 HOH HOH . D 4 HOH A 142 143 143 HOH HOH . D 4 HOH A 143 144 144 HOH HOH . D 4 HOH A 144 145 145 HOH HOH . D 4 HOH A 145 146 146 HOH HOH . D 4 HOH A 146 147 147 HOH HOH . D 4 HOH A 147 148 148 HOH HOH . D 4 HOH A 148 149 149 HOH HOH . D 4 HOH A 149 150 150 HOH HOH . D 4 HOH A 150 151 151 HOH HOH . D 4 HOH A 151 152 152 HOH HOH . D 4 HOH A 152 153 153 HOH HOH . D 4 HOH A 153 154 154 HOH HOH . D 4 HOH A 154 155 155 HOH HOH . D 4 HOH A 155 156 156 HOH HOH . D 4 HOH A 156 157 157 HOH HOH . D 4 HOH A 157 158 158 HOH HOH . D 4 HOH A 158 159 159 HOH HOH . D 4 HOH A 159 160 160 HOH HOH . D 4 HOH A 160 161 161 HOH HOH . D 4 HOH A 161 162 162 HOH HOH . D 4 HOH A 162 163 163 HOH HOH . D 4 HOH A 163 164 164 HOH HOH . D 4 HOH A 164 165 165 HOH HOH . D 4 HOH A 165 166 166 HOH HOH . D 4 HOH A 166 167 167 HOH HOH . D 4 HOH A 167 168 168 HOH HOH . D 4 HOH A 168 169 169 HOH HOH . D 4 HOH A 169 170 170 HOH HOH . D 4 HOH A 170 171 171 HOH HOH . D 4 HOH A 171 172 172 HOH HOH . D 4 HOH A 172 173 173 HOH HOH . D 4 HOH A 173 174 174 HOH HOH . D 4 HOH A 174 175 175 HOH HOH . D 4 HOH A 175 176 176 HOH HOH . D 4 HOH A 176 1132 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 JZH . . . B 2 9.003 18.065 0.254 1 22.52 ? O1 JZH 1 A 1 HETATM 2 C C2 JZH . . . B 2 9.737 17.014 0.778 1 24.05 ? C2 JZH 1 A 1 HETATM 3 C C3 JZH . . . B 2 10.037 16.985 2.138 1 20.84 ? C3 JZH 1 A 1 HETATM 4 C C4 JZH . . . B 2 10.819 15.978 2.633 1 19 ? C4 JZH 1 A 1 HETATM 5 C C5 JZH . . . B 2 11.288 14.949 1.795 1 21.91 ? C5 JZH 1 A 1 HETATM 6 C C6 JZH . . . B 2 11.013 14.969 0.417 1 19.68 ? C6 JZH 1 A 1 HETATM 7 C C7 JZH . . . B 2 10.225 16.003 -0.079 1 22.9 ? C7 JZH 1 A 1 HETATM 8 C C8 JZH . . . B 2 12.222 13.813 2.138 1 18.18 ? C8 JZH 1 A 1 HETATM 9 C C9 JZH . . . B 2 13.683 14.237 1.924 1 23.23 ? C9 JZH 1 A 1 HETATM 10 O O10 JZH . . . B 2 13.977 14.603 0.785 1 21.51 ? O10 JZH 1 A 1 HETATM 11 N N11 JZH . . . B 2 14.77 14.149 2.706 1 22.47 ? N11 JZH 1 A 1 HETATM 12 C C12 JZH . . . B 2 14.825 13.716 4.03 1 20.71 ? C12 JZH 1 A 1 HETATM 13 C C13 JZH . . . B 2 15.247 14.657 4.976 1 16.32 ? C13 JZH 1 A 1 HETATM 14 C C14 JZH . . . B 2 15.381 14.316 6.328 1 20.37 ? C14 JZH 1 A 1 HETATM 15 C C15 JZH . . . B 2 15.076 13.005 6.751 1 18.42 ? C15 JZH 1 A 1 HETATM 16 C C16 JZH . . . B 2 14.638 12.091 5.784 1 21.14 ? C16 JZH 1 A 1 HETATM 17 C C17 JZH . . . B 2 14.523 12.399 4.386 1 18.23 ? C17 JZH 1 A 1 HETATM 18 C C18 JZH . . . B 2 13.984 11.276 3.524 1 17.01 ? C18 JZH 1 A 1 HETATM 19 C C19 JZH . . . B 2 14.495 9.96 3.736 1 16.44 ? C19 JZH 1 A 1 HETATM 20 C C20 JZH . . . B 2 13.975 8.869 3.095 1 17.23 ? C20 JZH 1 A 1 HETATM 21 N N21 JZH . . . B 2 12.943 8.94 2.25 1 21.28 ? N21 JZH 1 A 1 HETATM 22 C C22 JZH . . . B 2 12.401 10.114 1.971 1 18.95 ? C22 JZH 1 A 1 HETATM 23 N N23 JZH . . . B 2 11.349 10.407 1.097 1 19.59 ? N23 JZH 1 A 1 HETATM 24 C C25 JZH . . . B 2 11.184 11.768 1.142 1 15.8 ? C25 JZH 1 A 1 HETATM 25 C C26 JZH . . . B 2 12.042 12.335 2.056 1 17.92 ? C26 JZH 1 A 1 HETATM 26 C C27 JZH . . . B 2 12.91 11.299 2.611 1 12.82 ? C27 JZH 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #