data_3JY9 # _model_server_result.job_id ge--roBzZ_Ywj5J0LACxqQ _model_server_result.datetime_utc '2024-12-08 02:52:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1131}' # _entry.id 3JY9 # _exptl.entry_id 3JY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'chemical synthesis' _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JY9 _cell.length_a 95.103 _cell.length_b 101.257 _cell.length_c 68.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 187 A GLU 1006 1_555 A N PTR 188 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C PTR 188 A PTR 1007 1_555 A N PTR 189 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C PTR 189 A PTR 1008 1_555 A N LYS 190 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3JY9 _atom_sites.fract_transf_matrix[1][1] 0.010515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JZH A 1 1 1 JZH JZH . C 3 NA A 1 1131 1 NA NA . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . D 4 HOH A 34 35 35 HOH HOH . D 4 HOH A 35 36 36 HOH HOH . D 4 HOH A 36 37 37 HOH HOH . D 4 HOH A 37 38 38 HOH HOH . D 4 HOH A 38 39 39 HOH HOH . D 4 HOH A 39 40 40 HOH HOH . D 4 HOH A 40 41 41 HOH HOH . D 4 HOH A 41 42 42 HOH HOH . D 4 HOH A 42 43 43 HOH HOH . D 4 HOH A 43 44 44 HOH HOH . D 4 HOH A 44 45 45 HOH HOH . D 4 HOH A 45 46 46 HOH HOH . D 4 HOH A 46 47 47 HOH HOH . D 4 HOH A 47 48 48 HOH HOH . D 4 HOH A 48 49 49 HOH HOH . D 4 HOH A 49 50 50 HOH HOH . D 4 HOH A 50 51 51 HOH HOH . D 4 HOH A 51 52 52 HOH HOH . D 4 HOH A 52 53 53 HOH HOH . D 4 HOH A 53 54 54 HOH HOH . D 4 HOH A 54 55 55 HOH HOH . D 4 HOH A 55 56 56 HOH HOH . D 4 HOH A 56 57 57 HOH HOH . D 4 HOH A 57 58 58 HOH HOH . D 4 HOH A 58 59 59 HOH HOH . D 4 HOH A 59 60 60 HOH HOH . D 4 HOH A 60 61 61 HOH HOH . D 4 HOH A 61 62 62 HOH HOH . D 4 HOH A 62 63 63 HOH HOH . D 4 HOH A 63 64 64 HOH HOH . D 4 HOH A 64 65 65 HOH HOH . D 4 HOH A 65 66 66 HOH HOH . D 4 HOH A 66 67 67 HOH HOH . D 4 HOH A 67 68 68 HOH HOH . D 4 HOH A 68 69 69 HOH HOH . D 4 HOH A 69 70 70 HOH HOH . D 4 HOH A 70 71 71 HOH HOH . D 4 HOH A 71 72 72 HOH HOH . D 4 HOH A 72 73 73 HOH HOH . D 4 HOH A 73 74 74 HOH HOH . D 4 HOH A 74 75 75 HOH HOH . D 4 HOH A 75 76 76 HOH HOH . D 4 HOH A 76 77 77 HOH HOH . D 4 HOH A 77 78 78 HOH HOH . D 4 HOH A 78 79 79 HOH HOH . D 4 HOH A 79 80 80 HOH HOH . D 4 HOH A 80 81 81 HOH HOH . D 4 HOH A 81 82 82 HOH HOH . D 4 HOH A 82 83 83 HOH HOH . D 4 HOH A 83 84 84 HOH HOH . D 4 HOH A 84 85 85 HOH HOH . D 4 HOH A 85 86 86 HOH HOH . D 4 HOH A 86 87 87 HOH HOH . D 4 HOH A 87 88 88 HOH HOH . D 4 HOH A 88 89 89 HOH HOH . D 4 HOH A 89 90 90 HOH HOH . D 4 HOH A 90 91 91 HOH HOH . D 4 HOH A 91 92 92 HOH HOH . D 4 HOH A 92 93 93 HOH HOH . D 4 HOH A 93 94 94 HOH HOH . D 4 HOH A 94 95 95 HOH HOH . D 4 HOH A 95 96 96 HOH HOH . D 4 HOH A 96 97 97 HOH HOH . D 4 HOH A 97 98 98 HOH HOH . D 4 HOH A 98 99 99 HOH HOH . D 4 HOH A 99 100 100 HOH HOH . D 4 HOH A 100 101 101 HOH HOH . D 4 HOH A 101 102 102 HOH HOH . D 4 HOH A 102 103 103 HOH HOH . D 4 HOH A 103 104 104 HOH HOH . D 4 HOH A 104 105 105 HOH HOH . D 4 HOH A 105 106 106 HOH HOH . D 4 HOH A 106 107 107 HOH HOH . D 4 HOH A 107 108 108 HOH HOH . D 4 HOH A 108 109 109 HOH HOH . D 4 HOH A 109 110 110 HOH HOH . D 4 HOH A 110 111 111 HOH HOH . D 4 HOH A 111 112 112 HOH HOH . D 4 HOH A 112 113 113 HOH HOH . D 4 HOH A 113 114 114 HOH HOH . D 4 HOH A 114 115 115 HOH HOH . D 4 HOH A 115 116 116 HOH HOH . D 4 HOH A 116 117 117 HOH HOH . D 4 HOH A 117 118 118 HOH HOH . D 4 HOH A 118 119 119 HOH HOH . D 4 HOH A 119 120 120 HOH HOH . D 4 HOH A 120 121 121 HOH HOH . D 4 HOH A 121 122 122 HOH HOH . D 4 HOH A 122 123 123 HOH HOH . D 4 HOH A 123 124 124 HOH HOH . D 4 HOH A 124 125 125 HOH HOH . D 4 HOH A 125 126 126 HOH HOH . D 4 HOH A 126 127 127 HOH HOH . D 4 HOH A 127 128 128 HOH HOH . D 4 HOH A 128 129 129 HOH HOH . D 4 HOH A 129 130 130 HOH HOH . D 4 HOH A 130 131 131 HOH HOH . D 4 HOH A 131 132 132 HOH HOH . D 4 HOH A 132 133 133 HOH HOH . D 4 HOH A 133 134 134 HOH HOH . D 4 HOH A 134 135 135 HOH HOH . D 4 HOH A 135 136 136 HOH HOH . D 4 HOH A 136 137 137 HOH HOH . D 4 HOH A 137 138 138 HOH HOH . D 4 HOH A 138 139 139 HOH HOH . D 4 HOH A 139 140 140 HOH HOH . D 4 HOH A 140 141 141 HOH HOH . D 4 HOH A 141 142 142 HOH HOH . D 4 HOH A 142 143 143 HOH HOH . D 4 HOH A 143 144 144 HOH HOH . D 4 HOH A 144 145 145 HOH HOH . D 4 HOH A 145 146 146 HOH HOH . D 4 HOH A 146 147 147 HOH HOH . D 4 HOH A 147 148 148 HOH HOH . D 4 HOH A 148 149 149 HOH HOH . D 4 HOH A 149 150 150 HOH HOH . D 4 HOH A 150 151 151 HOH HOH . D 4 HOH A 151 152 152 HOH HOH . D 4 HOH A 152 153 153 HOH HOH . D 4 HOH A 153 154 154 HOH HOH . D 4 HOH A 154 155 155 HOH HOH . D 4 HOH A 155 156 156 HOH HOH . D 4 HOH A 156 157 157 HOH HOH . D 4 HOH A 157 158 158 HOH HOH . D 4 HOH A 158 159 159 HOH HOH . D 4 HOH A 159 160 160 HOH HOH . D 4 HOH A 160 161 161 HOH HOH . D 4 HOH A 161 162 162 HOH HOH . D 4 HOH A 162 163 163 HOH HOH . D 4 HOH A 163 164 164 HOH HOH . D 4 HOH A 164 165 165 HOH HOH . D 4 HOH A 165 166 166 HOH HOH . D 4 HOH A 166 167 167 HOH HOH . D 4 HOH A 167 168 168 HOH HOH . D 4 HOH A 168 169 169 HOH HOH . D 4 HOH A 169 170 170 HOH HOH . D 4 HOH A 170 171 171 HOH HOH . D 4 HOH A 171 172 172 HOH HOH . D 4 HOH A 172 173 173 HOH HOH . D 4 HOH A 173 174 174 HOH HOH . D 4 HOH A 174 175 175 HOH HOH . D 4 HOH A 175 176 176 HOH HOH . D 4 HOH A 176 1132 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 2.523 _atom_site.Cartn_y 9.533 _atom_site.Cartn_z 13.318 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1131 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #