data_3JYI
#
_model_server_result.job_id            -lVRdYlqJB6g_l1fHnjWEA 
_model_server_result.datetime_utc      '2024-10-10 11:17:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":3380}' 
#
_entry.id    3JYI 
#
_exptl.entry_id    3JYI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3JYI 
_cell.length_a            88.099 
_cell.length_b            88.099 
_cell.length_c            500.352 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,Q 1 1 
B,I,J,R 2 1 
C,K,L,S 3 1 
D,M,T 4 1 
E,N,O,U 5 1 
F,P,V 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 77 1_555 A SG CYS 98 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 52 B CYS 77 1_555 B SG CYS 98 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 C SG CYS 52 C CYS 77 1_555 C SG CYS 98 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 D SG CYS 52 D CYS 77 1_555 D SG CYS 98 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf5 E SG CYS 52 E CYS 77 1_555 E SG CYS 98 E CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf6 F SG CYS 52 F CYS 77 1_555 F SG CYS 98 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     3JYI 
_atom_sites.fract_transf_matrix[1][1]    0.011351 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001999 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 EPE A 1 3380 3380 EPE EPE . 
H 3 PO4 A 1 1 1 PO4 PO4 . 
I 2 EPE B 1 3380 3380 EPE EPE . 
J 3 PO4 B 1 2 2 PO4 PO4 . 
K 2 EPE C 1 3380 3380 EPE EPE . 
L 3 PO4 C 1 4 4 PO4 PO4 . 
M 2 EPE D 1 3380 3380 EPE EPE . 
N 2 EPE E 1 3380 3380 EPE EPE . 
O 3 PO4 E 1 3 3 PO4 PO4 . 
P 2 EPE F 1 3380 3380 EPE EPE . 
Q 4 HOH A 1 3 3 HOH HOH . 
Q 4 HOH A 2 4 4 HOH HOH . 
Q 4 HOH A 3 5 5 HOH HOH . 
Q 4 HOH A 4 7 7 HOH HOH . 
Q 4 HOH A 5 8 8 HOH HOH . 
Q 4 HOH A 6 16 16 HOH HOH . 
Q 4 HOH A 7 23 23 HOH HOH . 
Q 4 HOH A 8 25 25 HOH HOH . 
Q 4 HOH A 9 289 38 HOH HOH . 
Q 4 HOH A 10 290 40 HOH HOH . 
Q 4 HOH A 11 291 41 HOH HOH . 
Q 4 HOH A 12 292 42 HOH HOH . 
Q 4 HOH A 13 293 44 HOH HOH . 
Q 4 HOH A 14 294 62 HOH HOH . 
Q 4 HOH A 15 295 67 HOH HOH . 
Q 4 HOH A 16 296 77 HOH HOH . 
Q 4 HOH A 17 297 79 HOH HOH . 
Q 4 HOH A 18 298 82 HOH HOH . 
Q 4 HOH A 19 299 87 HOH HOH . 
Q 4 HOH A 20 300 91 HOH HOH . 
Q 4 HOH A 21 301 94 HOH HOH . 
Q 4 HOH A 22 302 96 HOH HOH . 
Q 4 HOH A 23 303 108 HOH HOH . 
Q 4 HOH A 24 304 109 HOH HOH . 
Q 4 HOH A 25 305 111 HOH HOH . 
Q 4 HOH A 26 306 114 HOH HOH . 
Q 4 HOH A 27 307 115 HOH HOH . 
Q 4 HOH A 28 308 121 HOH HOH . 
Q 4 HOH A 29 309 127 HOH HOH . 
Q 4 HOH A 30 310 128 HOH HOH . 
Q 4 HOH A 31 311 132 HOH HOH . 
Q 4 HOH A 32 312 137 HOH HOH . 
Q 4 HOH A 33 313 142 HOH HOH . 
Q 4 HOH A 34 314 143 HOH HOH . 
Q 4 HOH A 35 315 151 HOH HOH . 
Q 4 HOH A 36 316 156 HOH HOH . 
Q 4 HOH A 37 317 162 HOH HOH . 
Q 4 HOH A 38 318 167 HOH HOH . 
Q 4 HOH A 39 319 169 HOH HOH . 
R 4 HOH B 1 17 17 HOH HOH . 
R 4 HOH B 2 24 24 HOH HOH . 
R 4 HOH B 3 289 31 HOH HOH . 
R 4 HOH B 4 290 39 HOH HOH . 
R 4 HOH B 5 291 43 HOH HOH . 
R 4 HOH B 6 292 47 HOH HOH . 
R 4 HOH B 7 293 48 HOH HOH . 
R 4 HOH B 8 294 50 HOH HOH . 
R 4 HOH B 9 295 55 HOH HOH . 
R 4 HOH B 10 296 56 HOH HOH . 
R 4 HOH B 11 297 61 HOH HOH . 
R 4 HOH B 12 298 64 HOH HOH . 
R 4 HOH B 13 299 65 HOH HOH . 
R 4 HOH B 14 300 68 HOH HOH . 
R 4 HOH B 15 301 69 HOH HOH . 
R 4 HOH B 16 302 71 HOH HOH . 
R 4 HOH B 17 303 75 HOH HOH . 
R 4 HOH B 18 304 80 HOH HOH . 
R 4 HOH B 19 305 92 HOH HOH . 
R 4 HOH B 20 306 97 HOH HOH . 
R 4 HOH B 21 307 118 HOH HOH . 
R 4 HOH B 22 308 120 HOH HOH . 
R 4 HOH B 23 309 123 HOH HOH . 
R 4 HOH B 24 310 130 HOH HOH . 
R 4 HOH B 25 311 134 HOH HOH . 
R 4 HOH B 26 312 138 HOH HOH . 
R 4 HOH B 27 313 140 HOH HOH . 
R 4 HOH B 28 314 148 HOH HOH . 
R 4 HOH B 29 315 150 HOH HOH . 
R 4 HOH B 30 316 155 HOH HOH . 
R 4 HOH B 31 317 158 HOH HOH . 
R 4 HOH B 32 318 170 HOH HOH . 
R 4 HOH B 33 319 171 HOH HOH . 
S 4 HOH C 1 1 1 HOH HOH . 
S 4 HOH C 2 10 10 HOH HOH . 
S 4 HOH C 3 12 12 HOH HOH . 
S 4 HOH C 4 13 13 HOH HOH . 
S 4 HOH C 5 18 18 HOH HOH . 
S 4 HOH C 6 19 19 HOH HOH . 
S 4 HOH C 7 21 21 HOH HOH . 
S 4 HOH C 8 289 26 HOH HOH . 
S 4 HOH C 9 290 27 HOH HOH . 
S 4 HOH C 10 291 29 HOH HOH . 
S 4 HOH C 11 292 33 HOH HOH . 
S 4 HOH C 12 293 37 HOH HOH . 
S 4 HOH C 13 294 49 HOH HOH . 
S 4 HOH C 14 295 51 HOH HOH . 
S 4 HOH C 15 296 52 HOH HOH . 
S 4 HOH C 16 297 53 HOH HOH . 
S 4 HOH C 17 298 60 HOH HOH . 
S 4 HOH C 18 299 70 HOH HOH . 
S 4 HOH C 19 300 76 HOH HOH . 
S 4 HOH C 20 301 83 HOH HOH . 
S 4 HOH C 21 302 84 HOH HOH . 
S 4 HOH C 22 303 85 HOH HOH . 
S 4 HOH C 23 304 93 HOH HOH . 
S 4 HOH C 24 305 99 HOH HOH . 
S 4 HOH C 25 306 100 HOH HOH . 
S 4 HOH C 26 307 101 HOH HOH . 
S 4 HOH C 27 308 103 HOH HOH . 
S 4 HOH C 28 309 106 HOH HOH . 
S 4 HOH C 29 310 110 HOH HOH . 
S 4 HOH C 30 311 113 HOH HOH . 
S 4 HOH C 31 312 117 HOH HOH . 
S 4 HOH C 32 313 124 HOH HOH . 
S 4 HOH C 33 314 126 HOH HOH . 
S 4 HOH C 34 315 131 HOH HOH . 
S 4 HOH C 35 316 139 HOH HOH . 
S 4 HOH C 36 317 141 HOH HOH . 
S 4 HOH C 37 318 144 HOH HOH . 
S 4 HOH C 38 319 147 HOH HOH . 
S 4 HOH C 39 320 149 HOH HOH . 
S 4 HOH C 40 321 153 HOH HOH . 
S 4 HOH C 41 322 157 HOH HOH . 
S 4 HOH C 42 323 160 HOH HOH . 
S 4 HOH C 43 324 163 HOH HOH . 
S 4 HOH C 44 325 164 HOH HOH . 
S 4 HOH C 45 326 166 HOH HOH . 
S 4 HOH C 46 327 172 HOH HOH . 
S 4 HOH C 47 328 174 HOH HOH . 
T 4 HOH D 1 2 2 HOH HOH . 
T 4 HOH D 2 6 6 HOH HOH . 
T 4 HOH D 3 9 9 HOH HOH . 
T 4 HOH D 4 11 11 HOH HOH . 
T 4 HOH D 5 14 14 HOH HOH . 
T 4 HOH D 6 22 22 HOH HOH . 
T 4 HOH D 7 289 28 HOH HOH . 
T 4 HOH D 8 290 30 HOH HOH . 
T 4 HOH D 9 291 32 HOH HOH . 
T 4 HOH D 10 292 36 HOH HOH . 
T 4 HOH D 11 293 45 HOH HOH . 
T 4 HOH D 12 294 46 HOH HOH . 
T 4 HOH D 13 295 57 HOH HOH . 
T 4 HOH D 14 296 58 HOH HOH . 
T 4 HOH D 15 297 63 HOH HOH . 
T 4 HOH D 16 298 66 HOH HOH . 
T 4 HOH D 17 299 72 HOH HOH . 
T 4 HOH D 18 300 73 HOH HOH . 
T 4 HOH D 19 301 78 HOH HOH . 
T 4 HOH D 20 302 81 HOH HOH . 
T 4 HOH D 21 303 86 HOH HOH . 
T 4 HOH D 22 304 89 HOH HOH . 
T 4 HOH D 23 305 95 HOH HOH . 
T 4 HOH D 24 306 104 HOH HOH . 
T 4 HOH D 25 307 112 HOH HOH . 
T 4 HOH D 26 308 125 HOH HOH . 
T 4 HOH D 27 309 135 HOH HOH . 
T 4 HOH D 28 310 145 HOH HOH . 
T 4 HOH D 29 311 154 HOH HOH . 
T 4 HOH D 30 312 159 HOH HOH . 
T 4 HOH D 31 313 168 HOH HOH . 
U 4 HOH E 1 15 15 HOH HOH . 
U 4 HOH E 2 20 20 HOH HOH . 
U 4 HOH E 3 289 34 HOH HOH . 
U 4 HOH E 4 290 35 HOH HOH . 
U 4 HOH E 5 291 54 HOH HOH . 
U 4 HOH E 6 292 74 HOH HOH . 
U 4 HOH E 7 293 88 HOH HOH . 
U 4 HOH E 8 294 90 HOH HOH . 
U 4 HOH E 9 295 98 HOH HOH . 
U 4 HOH E 10 296 102 HOH HOH . 
U 4 HOH E 11 297 105 HOH HOH . 
U 4 HOH E 12 298 107 HOH HOH . 
U 4 HOH E 13 299 116 HOH HOH . 
U 4 HOH E 14 300 119 HOH HOH . 
U 4 HOH E 15 301 122 HOH HOH . 
U 4 HOH E 16 302 133 HOH HOH . 
U 4 HOH E 17 303 136 HOH HOH . 
U 4 HOH E 18 304 146 HOH HOH . 
U 4 HOH E 19 305 165 HOH HOH . 
U 4 HOH E 20 306 173 HOH HOH . 
V 4 HOH F 1 289 59 HOH HOH . 
V 4 HOH F 2 290 129 HOH HOH . 
V 4 HOH F 3 291 152 HOH HOH . 
V 4 HOH F 4 292 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . M 2 14.631 -2.365 104.592 0 60.19 ? N1 EPE 3380 D 1 
HETATM 2 C C2 EPE . . . M 2 15.357 -2.491 103.317 0 62.6 ? C2 EPE 3380 D 1 
HETATM 3 C C3 EPE . . . M 2 16.853 -2.638 103.552 0 61.96 ? C3 EPE 3380 D 1 
HETATM 4 N N4 EPE . . . M 2 17.129 -3.782 104.39 0 62.99 ? N4 EPE 3380 D 1 
HETATM 5 C C5 EPE . . . M 2 16.012 -4.318 105.134 0 62.72 ? C5 EPE 3380 D 1 
HETATM 6 C C6 EPE . . . M 2 15.168 -3.182 105.691 0 61.3 ? C6 EPE 3380 D 1 
HETATM 7 C C7 EPE . . . M 2 18.227 -4.659 104.038 0 64.77 ? C7 EPE 3380 D 1 
HETATM 8 C C8 EPE . . . M 2 18.976 -5.172 105.263 0 65.97 ? C8 EPE 3380 D 1 
HETATM 9 O O8 EPE . . . M 2 18.096 -5.87 106.116 0 67.58 ? O8 EPE 3380 D 1 
HETATM 10 C C9 EPE . . . M 2 14.617 -0.953 104.975 1 56.36 ? C9 EPE 3380 D 1 
HETATM 11 C C10 EPE . . . M 2 13.199 -0.44 104.774 1 61.03 ? C10 EPE 3380 D 1 
HETATM 12 S S EPE . . . M 2 12.97 1.349 104.96 1 56.58 ? S EPE 3380 D 1 
HETATM 13 O O1S EPE . . . M 2 11.95 1.774 103.994 1 47.73 ? O1S EPE 3380 D 1 
HETATM 14 O O2S EPE . . . M 2 12.531 1.68 106.31 1 44.07 ? O2S EPE 3380 D 1 
HETATM 15 O O3S EPE . . . M 2 14.223 2.05 104.711 1 44.33 ? O3S EPE 3380 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#