data_3JYJ
#
_model_server_result.job_id            LOwh61UJKNZlrHRZEDq2pQ 
_model_server_result.datetime_utc      '2024-11-22 09:07:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3jyj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    3JYJ 
#
_exptl.entry_id    3JYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.391 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4E)-2-[(naphthalen-2-ylcarbonyl)amino]-5-phenylpent-4-enoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.85 
_cell.angle_gamma         90 
_cell.entry_id            3JYJ 
_cell.length_a            117.539 
_cell.length_b            36.564 
_cell.length_c            51.279 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3JYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H19 N O3' 
_chem_comp.formula_weight    345.391 
_chem_comp.id                JZI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4E)-2-[(naphthalen-2-ylcarbonyl)amino]-5-phenylpent-4-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C13 JZI doub 173 e n 
C1 C2 JZI sing 174 n n 
C1 H1 JZI sing 175 n n 
C7 C2 JZI doub 176 n y 
C2 C3 JZI sing 177 n y 
C3 C4 JZI doub 178 n y 
C3 H3 JZI sing 179 n n 
C5 C4 JZI sing 180 n y 
C4 H4 JZI sing 181 n n 
C6 C5 JZI doub 182 n y 
C5 H5 JZI sing 183 n n 
C7 C6 JZI sing 184 n y 
C6 H6 JZI sing 185 n n 
C7 H7 JZI sing 186 n n 
C10 C8 JZI sing 187 n n 
N25 C8 JZI sing 188 n n 
C9 C8 JZI sing 189 n n 
C8 H8 JZI sing 190 n n 
C9 C13 JZI sing 191 n n 
C9 H9 JZI sing 192 n n 
C9 H9A JZI sing 193 n n 
O11 C10 JZI doub 194 n n 
C10 O12 JZI sing 195 n n 
O12 HO12 JZI sing 196 n n 
C13 H13 JZI sing 197 n n 
C14 C17 JZI doub 198 n y 
C14 C15 JZI sing 199 n y 
C14 H14 JZI sing 200 n n 
C15 C16 JZI doub 201 n y 
C15 H15 JZI sing 202 n n 
C16 C19 JZI sing 203 n y 
C16 H16 JZI sing 204 n n 
C17 C18 JZI sing 205 n y 
C17 H17 JZI sing 206 n n 
C18 C23 JZI doub 207 n y 
C18 C19 JZI sing 208 n y 
C19 C20 JZI doub 209 n y 
C20 C21 JZI sing 210 n y 
C20 H20 JZI sing 211 n n 
C22 C21 JZI doub 212 n y 
C21 H21 JZI sing 213 n n 
C23 C22 JZI sing 214 n y 
C22 C24 JZI sing 215 n n 
C23 H23 JZI sing 216 n n 
N25 C24 JZI sing 217 n n 
C24 O26 JZI doub 218 n n 
N25 HN25 JZI sing 219 n n 
#
_atom_sites.entry_id                     3JYJ 
_atom_sites.fract_transf_matrix[1][1]    0.008508 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001631 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019856 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JZI A 1 301 301 JZI JZI . 
D 2 JZI B 1 302 302 JZI JZI . 
E 3 HOH A 1 19 19 HOH HOH . 
E 3 HOH A 2 21 21 HOH HOH . 
E 3 HOH A 3 22 22 HOH HOH . 
E 3 HOH A 4 23 23 HOH HOH . 
E 3 HOH A 5 24 24 HOH HOH . 
E 3 HOH A 6 25 25 HOH HOH . 
E 3 HOH A 7 26 26 HOH HOH . 
E 3 HOH A 8 27 27 HOH HOH . 
E 3 HOH A 9 28 28 HOH HOH . 
E 3 HOH A 10 29 29 HOH HOH . 
E 3 HOH A 11 30 30 HOH HOH . 
E 3 HOH A 12 31 31 HOH HOH . 
E 3 HOH A 13 32 32 HOH HOH . 
E 3 HOH A 14 33 33 HOH HOH . 
E 3 HOH A 15 34 34 HOH HOH . 
E 3 HOH A 16 35 35 HOH HOH . 
E 3 HOH A 17 36 36 HOH HOH . 
E 3 HOH A 18 37 37 HOH HOH . 
E 3 HOH A 19 38 38 HOH HOH . 
E 3 HOH A 20 39 39 HOH HOH . 
E 3 HOH A 21 40 40 HOH HOH . 
E 3 HOH A 22 164 41 HOH HOH . 
E 3 HOH A 23 165 42 HOH HOH . 
E 3 HOH A 24 166 43 HOH HOH . 
E 3 HOH A 25 167 44 HOH HOH . 
E 3 HOH A 26 168 45 HOH HOH . 
E 3 HOH A 27 169 46 HOH HOH . 
E 3 HOH A 28 170 47 HOH HOH . 
E 3 HOH A 29 171 48 HOH HOH . 
E 3 HOH A 30 172 49 HOH HOH . 
E 3 HOH A 31 173 50 HOH HOH . 
E 3 HOH A 32 174 51 HOH HOH . 
E 3 HOH A 33 175 52 HOH HOH . 
E 3 HOH A 34 176 53 HOH HOH . 
E 3 HOH A 35 177 54 HOH HOH . 
E 3 HOH A 36 178 55 HOH HOH . 
E 3 HOH A 37 179 59 HOH HOH . 
E 3 HOH A 38 180 60 HOH HOH . 
E 3 HOH A 39 181 61 HOH HOH . 
E 3 HOH A 40 182 65 HOH HOH . 
E 3 HOH A 41 183 67 HOH HOH . 
E 3 HOH A 42 184 68 HOH HOH . 
E 3 HOH A 43 185 70 HOH HOH . 
E 3 HOH A 44 186 72 HOH HOH . 
E 3 HOH A 45 187 74 HOH HOH . 
E 3 HOH A 46 188 76 HOH HOH . 
E 3 HOH A 47 189 77 HOH HOH . 
E 3 HOH A 48 190 79 HOH HOH . 
E 3 HOH A 49 191 80 HOH HOH . 
E 3 HOH A 50 192 81 HOH HOH . 
E 3 HOH A 51 193 83 HOH HOH . 
E 3 HOH A 52 194 86 HOH HOH . 
E 3 HOH A 53 195 87 HOH HOH . 
E 3 HOH A 54 196 88 HOH HOH . 
E 3 HOH A 55 197 89 HOH HOH . 
E 3 HOH A 56 198 90 HOH HOH . 
E 3 HOH A 57 199 91 HOH HOH . 
E 3 HOH A 58 200 92 HOH HOH . 
E 3 HOH A 59 201 95 HOH HOH . 
E 3 HOH A 60 202 96 HOH HOH . 
E 3 HOH A 61 203 98 HOH HOH . 
E 3 HOH A 62 204 99 HOH HOH . 
E 3 HOH A 63 205 102 HOH HOH . 
E 3 HOH A 64 206 104 HOH HOH . 
E 3 HOH A 65 207 105 HOH HOH . 
E 3 HOH A 66 208 108 HOH HOH . 
E 3 HOH A 67 209 110 HOH HOH . 
E 3 HOH A 68 210 113 HOH HOH . 
E 3 HOH A 69 211 116 HOH HOH . 
E 3 HOH A 70 212 118 HOH HOH . 
E 3 HOH A 71 213 119 HOH HOH . 
E 3 HOH A 72 214 120 HOH HOH . 
E 3 HOH A 73 215 122 HOH HOH . 
E 3 HOH A 74 216 123 HOH HOH . 
F 3 HOH B 1 1 1 HOH HOH . 
F 3 HOH B 2 2 2 HOH HOH . 
F 3 HOH B 3 3 3 HOH HOH . 
F 3 HOH B 4 4 4 HOH HOH . 
F 3 HOH B 5 5 5 HOH HOH . 
F 3 HOH B 6 6 6 HOH HOH . 
F 3 HOH B 7 7 7 HOH HOH . 
F 3 HOH B 8 8 8 HOH HOH . 
F 3 HOH B 9 9 9 HOH HOH . 
F 3 HOH B 10 10 10 HOH HOH . 
F 3 HOH B 11 11 11 HOH HOH . 
F 3 HOH B 12 12 12 HOH HOH . 
F 3 HOH B 13 13 13 HOH HOH . 
F 3 HOH B 14 14 14 HOH HOH . 
F 3 HOH B 15 15 15 HOH HOH . 
F 3 HOH B 16 16 16 HOH HOH . 
F 3 HOH B 17 17 17 HOH HOH . 
F 3 HOH B 18 18 18 HOH HOH . 
F 3 HOH B 19 20 20 HOH HOH . 
F 3 HOH B 20 164 56 HOH HOH . 
F 3 HOH B 21 165 57 HOH HOH . 
F 3 HOH B 22 166 58 HOH HOH . 
F 3 HOH B 23 167 62 HOH HOH . 
F 3 HOH B 24 168 63 HOH HOH . 
F 3 HOH B 25 169 64 HOH HOH . 
F 3 HOH B 26 170 66 HOH HOH . 
F 3 HOH B 27 171 71 HOH HOH . 
F 3 HOH B 28 172 73 HOH HOH . 
F 3 HOH B 29 173 75 HOH HOH . 
F 3 HOH B 30 174 78 HOH HOH . 
F 3 HOH B 31 175 82 HOH HOH . 
F 3 HOH B 32 176 84 HOH HOH . 
F 3 HOH B 33 177 85 HOH HOH . 
F 3 HOH B 34 178 93 HOH HOH . 
F 3 HOH B 35 179 94 HOH HOH . 
F 3 HOH B 36 180 97 HOH HOH . 
F 3 HOH B 37 181 100 HOH HOH . 
F 3 HOH B 38 182 101 HOH HOH . 
F 3 HOH B 39 183 103 HOH HOH . 
F 3 HOH B 40 184 106 HOH HOH . 
F 3 HOH B 41 185 107 HOH HOH . 
F 3 HOH B 42 186 109 HOH HOH . 
F 3 HOH B 43 187 111 HOH HOH . 
F 3 HOH B 44 188 112 HOH HOH . 
F 3 HOH B 45 189 114 HOH HOH . 
F 3 HOH B 46 190 115 HOH HOH . 
F 3 HOH B 47 191 117 HOH HOH . 
F 3 HOH B 48 192 121 HOH HOH . 
F 3 HOH B 49 193 125 HOH HOH . 
F 3 HOH B 50 194 126 HOH HOH . 
F 3 HOH B 51 195 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JZI . . . D 2 0.232 30.26 24.3 1 24.18 ? C1 JZI 302 B 1 
HETATM 2 C C2 JZI . . . D 2 0.238 31.669 23.869 1 22.23 ? C2 JZI 302 B 1 
HETATM 3 C C3 JZI . . . D 2 0.007 32.673 24.814 1 22.27 ? C3 JZI 302 B 1 
HETATM 4 C C4 JZI . . . D 2 0.016 33.997 24.381 1 21.3 ? C4 JZI 302 B 1 
HETATM 5 C C5 JZI . . . D 2 0.244 34.329 23.065 1 20.18 ? C5 JZI 302 B 1 
HETATM 6 C C6 JZI . . . D 2 0.469 33.331 22.132 1 25.06 ? C6 JZI 302 B 1 
HETATM 7 C C7 JZI . . . D 2 0.468 32.002 22.531 1 20.98 ? C7 JZI 302 B 1 
HETATM 8 C C8 JZI . . . D 2 -1.643 27.682 25.295 1 14.51 ? C8 JZI 302 B 1 
HETATM 9 C C9 JZI . . . D 2 -0.393 28.432 25.784 1 13.17 ? C9 JZI 302 B 1 
HETATM 10 C C10 JZI . . . D 2 -1.508 26.275 25.835 1 14.94 ? C10 JZI 302 B 1 
HETATM 11 O O11 JZI . . . D 2 -1.153 25.272 25.014 1 20.28 ? O11 JZI 302 B 1 
HETATM 12 O O12 JZI . . . D 2 -1.724 26.083 27.005 1 16.73 ? O12 JZI 302 B 1 
HETATM 13 C C13 JZI . . . D 2 -0.417 29.885 25.4 1 20.8 ? C13 JZI 302 B 1 
HETATM 14 C C14 JZI . . . D 2 -1.881 26.33 17.399 1 26.47 ? C14 JZI 302 B 1 
HETATM 15 C C15 JZI . . . D 2 -2.069 27.56 16.77 1 24.5 ? C15 JZI 302 B 1 
HETATM 16 C C16 JZI . . . D 2 -2.291 28.708 17.473 1 21.82 ? C16 JZI 302 B 1 
HETATM 17 C C17 JZI . . . D 2 -1.911 26.228 18.758 1 22.65 ? C17 JZI 302 B 1 
HETATM 18 C C18 JZI . . . D 2 -2.138 27.384 19.528 1 24.33 ? C18 JZI 302 B 1 
HETATM 19 C C19 JZI . . . D 2 -2.324 28.636 18.881 1 24.84 ? C19 JZI 302 B 1 
HETATM 20 C C20 JZI . . . D 2 -2.543 29.797 19.649 1 21.37 ? C20 JZI 302 B 1 
HETATM 21 C C21 JZI . . . D 2 -2.573 29.707 21.003 1 25.6 ? C21 JZI 302 B 1 
HETATM 22 C C22 JZI . . . D 2 -2.385 28.47 21.657 1 21.38 ? C22 JZI 302 B 1 
HETATM 23 C C23 JZI . . . D 2 -2.162 27.313 20.932 1 21.18 ? C23 JZI 302 B 1 
HETATM 24 C C24 JZI . . . D 2 -2.428 28.461 23.137 1 23.47 ? C24 JZI 302 B 1 
HETATM 25 N N25 JZI . . . D 2 -1.589 27.645 23.82 1 12.2 ? N25 JZI 302 B 1 
HETATM 26 O O26 JZI . . . D 2 -3.174 29.205 23.743 1 24.78 ? O26 JZI 302 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#