data_3JYU # _model_server_result.job_id qehpWl1MqjlvgUvsEH7tKw _model_server_result.datetime_utc '2025-03-03 17:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3JYU # _exptl.entry_id 3JYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 133.52 _cell.angle_gamma 90 _cell.entry_id 3JYU _cell.length_a 180.06 _cell.length_b 34.06 _cell.length_c 125.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 25 A LEU 25 1_555 A N MSE 26 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 26 A MSE 26 1_555 A N GLY 27 A GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ASP 57 A ASP 57 1_555 A N MSE 58 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 58 A MSE 58 1_555 A N TYR 59 A TYR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C GLU 170 A GLU 170 1_555 A N MSE 171 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 171 A MSE 171 1_555 A N ARG 172 A ARG 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C TYR 189 A TYR 189 1_555 A N MSE 190 A MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 190 A MSE 190 1_555 A N SER 191 A SER 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B C LEU 25 B LEU 25 1_555 B N MSE 26 B MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 26 B MSE 26 1_555 B N GLY 27 B GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 B C ASP 57 B ASP 57 1_555 B N MSE 58 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 58 B MSE 58 1_555 B N TYR 59 B TYR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C GLU 170 B GLU 170 1_555 B N MSE 171 B MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 B C MSE 171 B MSE 171 1_555 B N ARG 172 B ARG 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C TYR 189 B TYR 189 1_555 B N MSE 190 B MSE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C MSE 190 B MSE 190 1_555 B N SER 191 B SER 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C8 H11 N O3 S' _chem_comp.formula_weight 201.243 _chem_comp.id 1PS _chem_comp.mon_nstd_flag . _chem_comp.name 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1-(3-SULFOPROPYL) PYRIDINIUM;PPS' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 1PS sing 1 n y N1 C3 1PS doub 2 n y N1 C6 1PS sing 3 n n C1 C2 1PS doub 4 n y C1 H1 1PS sing 5 n n C2 C5 1PS sing 6 n y C2 H2 1PS sing 7 n n C3 C4 1PS sing 8 n y C3 H3 1PS sing 9 n n C4 C5 1PS doub 10 n y C4 H4 1PS sing 11 n n C5 H5 1PS sing 12 n n C6 C7 1PS sing 13 n n C6 H61 1PS sing 14 n n C6 H62 1PS sing 15 n n C7 C8 1PS sing 16 n n C7 H71 1PS sing 17 n n C7 H72 1PS sing 18 n n C8 S1 1PS sing 19 n n C8 H81 1PS sing 20 n n C8 H82 1PS sing 21 n n S1 O1 1PS sing 22 n n S1 O2 1PS doub 23 n n S1 O3 1PS doub 24 n n # _atom_sites.entry_id 3JYU _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005274 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PS B 1 1001 1001 1PS 1PS . D 3 HOH A 1 232 7 HOH HOH . D 3 HOH A 2 233 9 HOH HOH . D 3 HOH A 3 234 11 HOH HOH . D 3 HOH A 4 235 12 HOH HOH . D 3 HOH A 5 236 18 HOH HOH . D 3 HOH A 6 237 19 HOH HOH . D 3 HOH A 7 238 20 HOH HOH . D 3 HOH A 8 239 21 HOH HOH . D 3 HOH A 9 240 23 HOH HOH . D 3 HOH A 10 241 24 HOH HOH . D 3 HOH A 11 242 26 HOH HOH . D 3 HOH A 12 243 27 HOH HOH . D 3 HOH A 13 244 30 HOH HOH . D 3 HOH A 14 245 31 HOH HOH . D 3 HOH A 15 246 32 HOH HOH . D 3 HOH A 16 247 33 HOH HOH . D 3 HOH A 17 248 34 HOH HOH . D 3 HOH A 18 249 35 HOH HOH . D 3 HOH A 19 250 37 HOH HOH . D 3 HOH A 20 251 39 HOH HOH . D 3 HOH A 21 252 41 HOH HOH . D 3 HOH A 22 253 42 HOH HOH . D 3 HOH A 23 254 45 HOH HOH . D 3 HOH A 24 255 46 HOH HOH . D 3 HOH A 25 256 48 HOH HOH . D 3 HOH A 26 257 53 HOH HOH . D 3 HOH A 27 258 55 HOH HOH . D 3 HOH A 28 259 58 HOH HOH . D 3 HOH A 29 260 60 HOH HOH . D 3 HOH A 30 261 61 HOH HOH . D 3 HOH A 31 262 63 HOH HOH . D 3 HOH A 32 263 65 HOH HOH . D 3 HOH A 33 264 66 HOH HOH . D 3 HOH A 34 265 67 HOH HOH . D 3 HOH A 35 266 69 HOH HOH . D 3 HOH A 36 267 74 HOH HOH . D 3 HOH A 37 268 77 HOH HOH . D 3 HOH A 38 269 79 HOH HOH . D 3 HOH A 39 270 80 HOH HOH . D 3 HOH A 40 271 82 HOH HOH . D 3 HOH A 41 272 84 HOH HOH . D 3 HOH A 42 273 85 HOH HOH . D 3 HOH A 43 274 88 HOH HOH . D 3 HOH A 44 275 92 HOH HOH . D 3 HOH A 45 276 96 HOH HOH . D 3 HOH A 46 277 97 HOH HOH . D 3 HOH A 47 278 98 HOH HOH . D 3 HOH A 48 279 99 HOH HOH . D 3 HOH A 49 280 102 HOH HOH . D 3 HOH A 50 281 106 HOH HOH . D 3 HOH A 51 282 107 HOH HOH . D 3 HOH A 52 283 116 HOH HOH . D 3 HOH A 53 284 127 HOH HOH . D 3 HOH A 54 285 132 HOH HOH . D 3 HOH A 55 286 134 HOH HOH . D 3 HOH A 56 287 141 HOH HOH . D 3 HOH A 57 288 148 HOH HOH . D 3 HOH A 58 289 149 HOH HOH . D 3 HOH A 59 290 1 HOH HOH . D 3 HOH A 60 291 2 HOH HOH . E 3 HOH B 1 232 3 HOH HOH . E 3 HOH B 2 233 4 HOH HOH . E 3 HOH B 3 234 5 HOH HOH . E 3 HOH B 4 235 6 HOH HOH . E 3 HOH B 5 236 8 HOH HOH . E 3 HOH B 6 237 10 HOH HOH . E 3 HOH B 7 238 13 HOH HOH . E 3 HOH B 8 239 14 HOH HOH . E 3 HOH B 9 240 15 HOH HOH . E 3 HOH B 10 241 16 HOH HOH . E 3 HOH B 11 242 17 HOH HOH . E 3 HOH B 12 243 22 HOH HOH . E 3 HOH B 13 244 25 HOH HOH . E 3 HOH B 14 245 28 HOH HOH . E 3 HOH B 15 246 36 HOH HOH . E 3 HOH B 16 247 38 HOH HOH . E 3 HOH B 17 248 40 HOH HOH . E 3 HOH B 18 249 43 HOH HOH . E 3 HOH B 19 250 44 HOH HOH . E 3 HOH B 20 251 47 HOH HOH . E 3 HOH B 21 252 49 HOH HOH . E 3 HOH B 22 253 51 HOH HOH . E 3 HOH B 23 254 52 HOH HOH . E 3 HOH B 24 255 59 HOH HOH . E 3 HOH B 25 256 62 HOH HOH . E 3 HOH B 26 257 64 HOH HOH . E 3 HOH B 27 258 70 HOH HOH . E 3 HOH B 28 259 72 HOH HOH . E 3 HOH B 29 260 73 HOH HOH . E 3 HOH B 30 261 76 HOH HOH . E 3 HOH B 31 262 81 HOH HOH . E 3 HOH B 32 263 83 HOH HOH . E 3 HOH B 33 264 86 HOH HOH . E 3 HOH B 34 265 87 HOH HOH . E 3 HOH B 35 266 95 HOH HOH . E 3 HOH B 36 267 103 HOH HOH . E 3 HOH B 37 268 104 HOH HOH . E 3 HOH B 38 269 111 HOH HOH . E 3 HOH B 39 270 113 HOH HOH . E 3 HOH B 40 271 122 HOH HOH . E 3 HOH B 41 272 133 HOH HOH . E 3 HOH B 42 273 135 HOH HOH . E 3 HOH B 43 274 139 HOH HOH . E 3 HOH B 44 275 142 HOH HOH . E 3 HOH B 45 276 143 HOH HOH . E 3 HOH B 46 277 144 HOH HOH . E 3 HOH B 47 278 145 HOH HOH . E 3 HOH B 48 279 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1PS . . . C 2 97.913 23.337 38.622 1 57.83 ? N1 1PS 1001 B 1 HETATM 2 C C1 1PS . . . C 2 97.22 22.85 39.804 1 56.33 ? C1 1PS 1001 B 1 HETATM 3 C C2 1PS . . . C 2 97.258 23.689 41.084 1 63 ? C2 1PS 1001 B 1 HETATM 4 C C3 1PS . . . C 2 98.665 24.561 38.682 1 54.54 ? C3 1PS 1001 B 1 HETATM 5 C C4 1PS . . . C 2 99.078 25.156 40.036 1 59.32 ? C4 1PS 1001 B 1 HETATM 6 C C5 1PS . . . C 2 98.268 24.834 41.307 1 59.59 ? C5 1PS 1001 B 1 HETATM 7 C C6 1PS . . . C 2 97.909 22.56 37.423 1 53 ? C6 1PS 1001 B 1 HETATM 8 C C7 1PS . . . C 2 96.918 21.456 37.37 1 47.77 ? C7 1PS 1001 B 1 HETATM 9 C C8 1PS . . . C 2 97.39 20.141 36.86 1 52.37 ? C8 1PS 1001 B 1 HETATM 10 S S1 1PS . . . C 2 96.882 19.546 35.266 1 51.32 ? S1 1PS 1001 B 1 HETATM 11 O O1 1PS . . . C 2 97.972 19.769 34.308 1 54.46 ? O1 1PS 1001 B 1 HETATM 12 O O2 1PS . . . C 2 95.675 20.228 34.769 1 54.11 ? O2 1PS 1001 B 1 HETATM 13 O O3 1PS . . . C 2 96.583 18.12 35.443 1 34.19 ? O3 1PS 1001 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #