data_3JZ1 # _model_server_result.job_id k9ZWII5gOqHXe65l6kr5eg _model_server_result.datetime_utc '2024-12-27 00:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 3JZ1 # _exptl.entry_id 3JZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.29 _cell.angle_gamma 90 _cell.entry_id 3JZ1 _cell.length_a 119.979 _cell.length_b 47.67 _cell.length_c 50.688 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -2.025361 0 50.64752 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 E C1 NAG . B NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.474 ? metalc ? metalc1 A O TYR 32 A TYR 14 1_555 C NA NA . A NA 402 1_555 J ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 C NA NA . A NA 402 1_555 D O1 NO3 . A NO3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 C NA NA . A NA 402 1_555 D N NO3 . A NO3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc4 C NA NA . A NA 402 1_555 D O3 NO3 . A NO3 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc5 C NA NA . A NA 402 1_555 I O HOH . A HOH 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc6 C NA NA . A NA 402 1_555 B OH TYR 134 B TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 B O ARG 233 B ARG 221 1_555 F NA NA . B NA 401 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 B O LYS 236 B LYS 224 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 F NA NA . B NA 401 1_555 J O HOH . B HOH 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc10 F NA NA . B NA 401 1_555 J O HOH . B HOH 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 F NA NA . B NA 401 1_555 J O HOH . B HOH 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc12 F NA NA . B NA 401 1_555 J O HOH . B HOH 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 280 n n N O2 NO3 sing 281 n n N O3 NO3 sing 282 n n # _atom_sites.entry_id 3JZ1 _atom_sites.fract_transf_matrix[1][1] 0.008335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 402 402 NA NA . D 4 NO3 A 1 404 404 NO3 NO3 . E 5 NAG B 1 301 301 NAG NAG . F 3 NA B 1 401 401 NA NA . G 4 NO3 B 1 403 403 NO3 NO3 . H 6 GOL B 1 405 405 GOL GOL . I 7 HOH A 1 1002 1002 HOH HOH . I 7 HOH A 2 1010 1010 HOH HOH . I 7 HOH A 3 1020 1020 HOH HOH . I 7 HOH A 4 1031 1031 HOH HOH . I 7 HOH A 5 1041 1041 HOH HOH . I 7 HOH A 6 1047 1047 HOH HOH . I 7 HOH A 7 1074 1074 HOH HOH . I 7 HOH A 8 1075 1075 HOH HOH . I 7 HOH A 9 1085 1085 HOH HOH . I 7 HOH A 10 1087 1087 HOH HOH . I 7 HOH A 11 1095 1095 HOH HOH . I 7 HOH A 12 1105 1105 HOH HOH . I 7 HOH A 13 1132 1132 HOH HOH . I 7 HOH A 14 1143 1143 HOH HOH . I 7 HOH A 15 1163 1163 HOH HOH . I 7 HOH A 16 1170 1170 HOH HOH . I 7 HOH A 17 1173 1173 HOH HOH . I 7 HOH A 18 1177 1177 HOH HOH . I 7 HOH A 19 1201 1201 HOH HOH . I 7 HOH A 20 1202 1202 HOH HOH . I 7 HOH A 21 1213 1213 HOH HOH . I 7 HOH A 22 1214 1214 HOH HOH . J 7 HOH B 1 1001 1001 HOH HOH . J 7 HOH B 2 1003 1003 HOH HOH . J 7 HOH B 3 1004 1004 HOH HOH . J 7 HOH B 4 1005 1005 HOH HOH . J 7 HOH B 5 1006 1006 HOH HOH . J 7 HOH B 6 1007 1007 HOH HOH . J 7 HOH B 7 1008 1008 HOH HOH . J 7 HOH B 8 1009 1009 HOH HOH . J 7 HOH B 9 1011 1011 HOH HOH . J 7 HOH B 10 1012 1012 HOH HOH . J 7 HOH B 11 1013 1013 HOH HOH . J 7 HOH B 12 1014 1014 HOH HOH . J 7 HOH B 13 1015 1015 HOH HOH . J 7 HOH B 14 1016 1016 HOH HOH . J 7 HOH B 15 1017 1017 HOH HOH . J 7 HOH B 16 1018 1018 HOH HOH . J 7 HOH B 17 1019 1019 HOH HOH . J 7 HOH B 18 1021 1021 HOH HOH . J 7 HOH B 19 1022 1022 HOH HOH . J 7 HOH B 20 1023 1023 HOH HOH . J 7 HOH B 21 1024 1024 HOH HOH . J 7 HOH B 22 1025 1025 HOH HOH . J 7 HOH B 23 1026 1026 HOH HOH . J 7 HOH B 24 1027 1027 HOH HOH . J 7 HOH B 25 1028 1028 HOH HOH . J 7 HOH B 26 1029 1029 HOH HOH . J 7 HOH B 27 1030 1030 HOH HOH . J 7 HOH B 28 1032 1032 HOH HOH . J 7 HOH B 29 1033 1033 HOH HOH . J 7 HOH B 30 1034 1034 HOH HOH . J 7 HOH B 31 1035 1035 HOH HOH . J 7 HOH B 32 1036 1036 HOH HOH . J 7 HOH B 33 1037 1037 HOH HOH . J 7 HOH B 34 1038 1038 HOH HOH . J 7 HOH B 35 1039 1039 HOH HOH . J 7 HOH B 36 1040 1040 HOH HOH . J 7 HOH B 37 1042 1042 HOH HOH . J 7 HOH B 38 1043 1043 HOH HOH . J 7 HOH B 39 1044 1044 HOH HOH . J 7 HOH B 40 1045 1045 HOH HOH . J 7 HOH B 41 1046 1046 HOH HOH . J 7 HOH B 42 1048 1048 HOH HOH . J 7 HOH B 43 1049 1049 HOH HOH . J 7 HOH B 44 1050 1050 HOH HOH . J 7 HOH B 45 1051 1051 HOH HOH . J 7 HOH B 46 1052 1052 HOH HOH . J 7 HOH B 47 1053 1053 HOH HOH . J 7 HOH B 48 1054 1054 HOH HOH . J 7 HOH B 49 1055 1055 HOH HOH . J 7 HOH B 50 1056 1056 HOH HOH . J 7 HOH B 51 1057 1057 HOH HOH . J 7 HOH B 52 1058 1058 HOH HOH . J 7 HOH B 53 1059 1059 HOH HOH . J 7 HOH B 54 1060 1060 HOH HOH . J 7 HOH B 55 1061 1061 HOH HOH . J 7 HOH B 56 1062 1062 HOH HOH . J 7 HOH B 57 1063 1063 HOH HOH . J 7 HOH B 58 1064 1064 HOH HOH . J 7 HOH B 59 1065 1065 HOH HOH . J 7 HOH B 60 1066 1066 HOH HOH . J 7 HOH B 61 1067 1067 HOH HOH . J 7 HOH B 62 1068 1068 HOH HOH . J 7 HOH B 63 1069 1069 HOH HOH . J 7 HOH B 64 1070 1070 HOH HOH . J 7 HOH B 65 1071 1071 HOH HOH . J 7 HOH B 66 1072 1072 HOH HOH . J 7 HOH B 67 1073 1073 HOH HOH . J 7 HOH B 68 1076 1076 HOH HOH . J 7 HOH B 69 1077 1077 HOH HOH . J 7 HOH B 70 1078 1078 HOH HOH . J 7 HOH B 71 1079 1079 HOH HOH . J 7 HOH B 72 1080 1080 HOH HOH . J 7 HOH B 73 1081 1081 HOH HOH . J 7 HOH B 74 1082 1082 HOH HOH . J 7 HOH B 75 1083 1083 HOH HOH . J 7 HOH B 76 1084 1084 HOH HOH . J 7 HOH B 77 1086 1086 HOH HOH . J 7 HOH B 78 1088 1088 HOH HOH . J 7 HOH B 79 1089 1089 HOH HOH . J 7 HOH B 80 1090 1090 HOH HOH . J 7 HOH B 81 1091 1091 HOH HOH . J 7 HOH B 82 1092 1092 HOH HOH . J 7 HOH B 83 1093 1093 HOH HOH . J 7 HOH B 84 1094 1094 HOH HOH . J 7 HOH B 85 1096 1096 HOH HOH . J 7 HOH B 86 1097 1097 HOH HOH . J 7 HOH B 87 1098 1098 HOH HOH . J 7 HOH B 88 1099 1099 HOH HOH . J 7 HOH B 89 1100 1100 HOH HOH . J 7 HOH B 90 1101 1101 HOH HOH . J 7 HOH B 91 1102 1102 HOH HOH . J 7 HOH B 92 1103 1103 HOH HOH . J 7 HOH B 93 1104 1104 HOH HOH . J 7 HOH B 94 1106 1106 HOH HOH . J 7 HOH B 95 1107 1107 HOH HOH . J 7 HOH B 96 1108 1108 HOH HOH . J 7 HOH B 97 1109 1109 HOH HOH . J 7 HOH B 98 1110 1110 HOH HOH . J 7 HOH B 99 1111 1111 HOH HOH . J 7 HOH B 100 1112 1112 HOH HOH . J 7 HOH B 101 1113 1113 HOH HOH . J 7 HOH B 102 1114 1114 HOH HOH . J 7 HOH B 103 1115 1115 HOH HOH . J 7 HOH B 104 1116 1116 HOH HOH . J 7 HOH B 105 1117 1117 HOH HOH . J 7 HOH B 106 1118 1118 HOH HOH . J 7 HOH B 107 1119 1119 HOH HOH . J 7 HOH B 108 1120 1120 HOH HOH . J 7 HOH B 109 1121 1121 HOH HOH . J 7 HOH B 110 1122 1122 HOH HOH . J 7 HOH B 111 1123 1123 HOH HOH . J 7 HOH B 112 1124 1124 HOH HOH . J 7 HOH B 113 1125 1125 HOH HOH . J 7 HOH B 114 1126 1126 HOH HOH . J 7 HOH B 115 1127 1127 HOH HOH . J 7 HOH B 116 1128 1128 HOH HOH . J 7 HOH B 117 1129 1129 HOH HOH . J 7 HOH B 118 1130 1130 HOH HOH . J 7 HOH B 119 1131 1131 HOH HOH . J 7 HOH B 120 1133 1133 HOH HOH . J 7 HOH B 121 1134 1134 HOH HOH . J 7 HOH B 122 1135 1135 HOH HOH . J 7 HOH B 123 1136 1136 HOH HOH . J 7 HOH B 124 1137 1137 HOH HOH . J 7 HOH B 125 1138 1138 HOH HOH . J 7 HOH B 126 1139 1139 HOH HOH . J 7 HOH B 127 1140 1140 HOH HOH . J 7 HOH B 128 1141 1141 HOH HOH . J 7 HOH B 129 1142 1142 HOH HOH . J 7 HOH B 130 1144 1144 HOH HOH . J 7 HOH B 131 1145 1145 HOH HOH . J 7 HOH B 132 1146 1146 HOH HOH . J 7 HOH B 133 1147 1147 HOH HOH . J 7 HOH B 134 1148 1148 HOH HOH . J 7 HOH B 135 1149 1149 HOH HOH . J 7 HOH B 136 1150 1150 HOH HOH . J 7 HOH B 137 1151 1151 HOH HOH . J 7 HOH B 138 1152 1152 HOH HOH . J 7 HOH B 139 1153 1153 HOH HOH . J 7 HOH B 140 1154 1154 HOH HOH . J 7 HOH B 141 1155 1155 HOH HOH . J 7 HOH B 142 1156 1156 HOH HOH . J 7 HOH B 143 1157 1157 HOH HOH . J 7 HOH B 144 1158 1158 HOH HOH . J 7 HOH B 145 1159 1159 HOH HOH . J 7 HOH B 146 1160 1160 HOH HOH . J 7 HOH B 147 1161 1161 HOH HOH . J 7 HOH B 148 1162 1162 HOH HOH . J 7 HOH B 149 1164 1164 HOH HOH . J 7 HOH B 150 1165 1165 HOH HOH . J 7 HOH B 151 1166 1166 HOH HOH . J 7 HOH B 152 1167 1167 HOH HOH . J 7 HOH B 153 1168 1168 HOH HOH . J 7 HOH B 154 1169 1169 HOH HOH . J 7 HOH B 155 1171 1171 HOH HOH . J 7 HOH B 156 1172 1172 HOH HOH . J 7 HOH B 157 1174 1174 HOH HOH . J 7 HOH B 158 1175 1175 HOH HOH . J 7 HOH B 159 1176 1176 HOH HOH . J 7 HOH B 160 1178 1178 HOH HOH . J 7 HOH B 161 1179 1179 HOH HOH . J 7 HOH B 162 1180 1180 HOH HOH . J 7 HOH B 163 1181 1181 HOH HOH . J 7 HOH B 164 1182 1182 HOH HOH . J 7 HOH B 165 1183 1183 HOH HOH . J 7 HOH B 166 1184 1184 HOH HOH . J 7 HOH B 167 1185 1185 HOH HOH . J 7 HOH B 168 1186 1186 HOH HOH . J 7 HOH B 169 1187 1187 HOH HOH . J 7 HOH B 170 1188 1188 HOH HOH . J 7 HOH B 171 1189 1189 HOH HOH . J 7 HOH B 172 1190 1190 HOH HOH . J 7 HOH B 173 1191 1191 HOH HOH . J 7 HOH B 174 1192 1192 HOH HOH . J 7 HOH B 175 1193 1193 HOH HOH . J 7 HOH B 176 1194 1194 HOH HOH . J 7 HOH B 177 1195 1195 HOH HOH . J 7 HOH B 178 1196 1196 HOH HOH . J 7 HOH B 179 1197 1197 HOH HOH . J 7 HOH B 180 1198 1198 HOH HOH . J 7 HOH B 181 1199 1199 HOH HOH . J 7 HOH B 182 1200 1200 HOH HOH . J 7 HOH B 183 1203 1203 HOH HOH . J 7 HOH B 184 1204 1204 HOH HOH . J 7 HOH B 185 1205 1205 HOH HOH . J 7 HOH B 186 1206 1206 HOH HOH . J 7 HOH B 187 1207 1207 HOH HOH . J 7 HOH B 188 1208 1208 HOH HOH . J 7 HOH B 189 1209 1209 HOH HOH . J 7 HOH B 190 1210 1210 HOH HOH . J 7 HOH B 191 1211 1211 HOH HOH . J 7 HOH B 192 1212 1212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . G 4 1.696 -28.128 19.843 1 57.5 ? N NO3 403 B 1 HETATM 2 O O1 NO3 . . . G 4 2.286 -29.189 19.962 1 58.32 ? O1 NO3 403 B 1 HETATM 3 O O2 NO3 . . . G 4 2.131 -27.271 19.102 1 52.74 ? O2 NO3 403 B 1 HETATM 4 O O3 NO3 . . . G 4 0.672 -27.925 20.465 1 53.55 ? O3 NO3 403 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #