data_3JZ2 # _model_server_result.job_id wV02s6cnivql3BxCIPmYLQ _model_server_result.datetime_utc '2024-12-27 00:37:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3jz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 3JZ2 # _exptl.entry_id 3JZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3JZ2 _cell.length_a 57.89 _cell.length_b 57.89 _cell.length_c 119.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3JZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 C C1 NAG . B NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3JZ2 _atom_sites.fract_transf_matrix[1][1] 0.017274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG B 1 301 301 NAG NAG . D 4 GOL B 1 401 401 GOL GOL . E 4 GOL B 1 402 402 GOL GOL . F 4 GOL B 1 403 403 GOL GOL . G 4 GOL B 1 404 404 GOL GOL . H 5 HOH A 1 1006 1006 HOH HOH . H 5 HOH A 2 1010 1010 HOH HOH . H 5 HOH A 3 1034 1034 HOH HOH . H 5 HOH A 4 1037 1037 HOH HOH . H 5 HOH A 5 1038 1038 HOH HOH . H 5 HOH A 6 1043 1043 HOH HOH . H 5 HOH A 7 1045 1045 HOH HOH . H 5 HOH A 8 1054 1054 HOH HOH . H 5 HOH A 9 1055 1055 HOH HOH . H 5 HOH A 10 1065 1065 HOH HOH . H 5 HOH A 11 1089 1089 HOH HOH . H 5 HOH A 12 1099 1099 HOH HOH . H 5 HOH A 13 1106 1106 HOH HOH . H 5 HOH A 14 1107 1107 HOH HOH . I 5 HOH B 1 1001 1001 HOH HOH . I 5 HOH B 2 1002 1002 HOH HOH . I 5 HOH B 3 1003 1003 HOH HOH . I 5 HOH B 4 1004 1004 HOH HOH . I 5 HOH B 5 1005 1005 HOH HOH . I 5 HOH B 6 1007 1007 HOH HOH . I 5 HOH B 7 1008 1008 HOH HOH . I 5 HOH B 8 1009 1009 HOH HOH . I 5 HOH B 9 1011 1011 HOH HOH . I 5 HOH B 10 1012 1012 HOH HOH . I 5 HOH B 11 1013 1013 HOH HOH . I 5 HOH B 12 1014 1014 HOH HOH . I 5 HOH B 13 1015 1015 HOH HOH . I 5 HOH B 14 1016 1016 HOH HOH . I 5 HOH B 15 1017 1017 HOH HOH . I 5 HOH B 16 1018 1018 HOH HOH . I 5 HOH B 17 1019 1019 HOH HOH . I 5 HOH B 18 1020 1020 HOH HOH . I 5 HOH B 19 1021 1021 HOH HOH . I 5 HOH B 20 1022 1022 HOH HOH . I 5 HOH B 21 1023 1023 HOH HOH . I 5 HOH B 22 1024 1024 HOH HOH . I 5 HOH B 23 1025 1025 HOH HOH . I 5 HOH B 24 1026 1026 HOH HOH . I 5 HOH B 25 1027 1027 HOH HOH . I 5 HOH B 26 1028 1028 HOH HOH . I 5 HOH B 27 1029 1029 HOH HOH . I 5 HOH B 28 1030 1030 HOH HOH . I 5 HOH B 29 1031 1031 HOH HOH . I 5 HOH B 30 1032 1032 HOH HOH . I 5 HOH B 31 1033 1033 HOH HOH . I 5 HOH B 32 1035 1035 HOH HOH . I 5 HOH B 33 1036 1036 HOH HOH . I 5 HOH B 34 1039 1039 HOH HOH . I 5 HOH B 35 1040 1040 HOH HOH . I 5 HOH B 36 1041 1041 HOH HOH . I 5 HOH B 37 1042 1042 HOH HOH . I 5 HOH B 38 1044 1044 HOH HOH . I 5 HOH B 39 1046 1046 HOH HOH . I 5 HOH B 40 1047 1047 HOH HOH . I 5 HOH B 41 1048 1048 HOH HOH . I 5 HOH B 42 1049 1049 HOH HOH . I 5 HOH B 43 1050 1050 HOH HOH . I 5 HOH B 44 1051 1051 HOH HOH . I 5 HOH B 45 1052 1052 HOH HOH . I 5 HOH B 46 1053 1053 HOH HOH . I 5 HOH B 47 1056 1056 HOH HOH . I 5 HOH B 48 1057 1057 HOH HOH . I 5 HOH B 49 1058 1058 HOH HOH . I 5 HOH B 50 1059 1059 HOH HOH . I 5 HOH B 51 1060 1060 HOH HOH . I 5 HOH B 52 1061 1061 HOH HOH . I 5 HOH B 53 1062 1062 HOH HOH . I 5 HOH B 54 1063 1063 HOH HOH . I 5 HOH B 55 1064 1064 HOH HOH . I 5 HOH B 56 1066 1066 HOH HOH . I 5 HOH B 57 1067 1067 HOH HOH . I 5 HOH B 58 1068 1068 HOH HOH . I 5 HOH B 59 1069 1069 HOH HOH . I 5 HOH B 60 1070 1070 HOH HOH . I 5 HOH B 61 1071 1071 HOH HOH . I 5 HOH B 62 1072 1072 HOH HOH . I 5 HOH B 63 1073 1073 HOH HOH . I 5 HOH B 64 1074 1074 HOH HOH . I 5 HOH B 65 1075 1075 HOH HOH . I 5 HOH B 66 1076 1076 HOH HOH . I 5 HOH B 67 1077 1077 HOH HOH . I 5 HOH B 68 1078 1078 HOH HOH . I 5 HOH B 69 1079 1079 HOH HOH . I 5 HOH B 70 1080 1080 HOH HOH . I 5 HOH B 71 1081 1081 HOH HOH . I 5 HOH B 72 1082 1082 HOH HOH . I 5 HOH B 73 1083 1083 HOH HOH . I 5 HOH B 74 1084 1084 HOH HOH . I 5 HOH B 75 1085 1085 HOH HOH . I 5 HOH B 76 1086 1086 HOH HOH . I 5 HOH B 77 1087 1087 HOH HOH . I 5 HOH B 78 1088 1088 HOH HOH . I 5 HOH B 79 1090 1090 HOH HOH . I 5 HOH B 80 1091 1091 HOH HOH . I 5 HOH B 81 1092 1092 HOH HOH . I 5 HOH B 82 1093 1093 HOH HOH . I 5 HOH B 83 1094 1094 HOH HOH . I 5 HOH B 84 1095 1095 HOH HOH . I 5 HOH B 85 1096 1096 HOH HOH . I 5 HOH B 86 1097 1097 HOH HOH . I 5 HOH B 87 1098 1098 HOH HOH . I 5 HOH B 88 1100 1100 HOH HOH . I 5 HOH B 89 1101 1101 HOH HOH . I 5 HOH B 90 1102 1102 HOH HOH . I 5 HOH B 91 1103 1103 HOH HOH . I 5 HOH B 92 1104 1104 HOH HOH . I 5 HOH B 93 1105 1105 HOH HOH . I 5 HOH B 94 1108 1108 HOH HOH . I 5 HOH B 95 1109 1109 HOH HOH . I 5 HOH B 96 1110 1110 HOH HOH . I 5 HOH B 97 1111 1111 HOH HOH . I 5 HOH B 98 1112 1112 HOH HOH . I 5 HOH B 99 1113 1113 HOH HOH . I 5 HOH B 100 1114 1114 HOH HOH . I 5 HOH B 101 1115 1115 HOH HOH . I 5 HOH B 102 1116 1116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 18.79 23.476 11.05 1 51.73 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . F 4 18.53 22.366 10.23 1 48.32 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . F 4 18.74 23.083 12.526 1 53.66 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . F 4 18.399 24.238 13.266 1 53.81 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . F 4 20.05 22.452 13.017 1 52.94 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . F 4 20.217 21.174 12.439 1 53.41 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #