data_3K0G # _model_server_result.job_id Bghqm39hlbKC5K4rnfOnAg _model_server_result.datetime_utc '2025-07-13 21:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 3K0G # _exptl.entry_id 3K0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K0G _cell.length_a 67.57 _cell.length_b 67.57 _cell.length_c 89.539 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,O 1 1,2,3,4 B,J,K,L,M,N,P 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 O O HOH . A HOH 1 1_555 H NA NA . A NA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc2 F NA NA . A NA 4 1_555 A OG1 THR 46 A THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 F NA NA . A NA 4 1_555 O O HOH . A HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc4 G NA NA . A NA 5 1_555 A O THR 46 A THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc5 L NA NA . B NA 1 1_555 B O THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc6 L NA NA . B NA 1 1_555 B O VAL 47 B VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc7 M NA NA . B NA 2 1_555 B OG1 THR 46 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc8 M NA NA . B NA 2 1_555 P O HOH . B HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 224 n n C1 H11 MPD sing 225 n n C1 H12 MPD sing 226 n n C1 H13 MPD sing 227 n n C2 O2 MPD sing 228 n n C2 CM MPD sing 229 n n C2 C3 MPD sing 230 n n O2 HO2 MPD sing 231 n n CM HM1 MPD sing 232 n n CM HM2 MPD sing 233 n n CM HM3 MPD sing 234 n n C3 C4 MPD sing 235 n n C3 H31 MPD sing 236 n n C3 H32 MPD sing 237 n n C4 O4 MPD sing 238 n n C4 C5 MPD sing 239 n n C4 H4 MPD sing 240 n n O4 HO4 MPD sing 241 n n C5 H51 MPD sing 242 n n C5 H52 MPD sing 243 n n C5 H53 MPD sing 244 n n # _atom_sites.entry_id 3K0G _atom_sites.fract_transf_matrix[1][1] 0.014799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 501 501 MPD MPD . D 2 MPD A 1 502 502 MPD MPD . E 2 MPD A 1 504 504 MPD MPD . F 3 NA A 1 4 4 NA NA . G 3 NA A 1 5 5 NA NA . H 3 NA A 1 6 6 NA NA . I 3 NA A 1 7 7 NA NA . J 2 MPD B 1 503 503 MPD MPD . K 2 MPD B 1 505 505 MPD MPD . L 3 NA B 1 1 1 NA NA . M 3 NA B 1 2 2 NA NA . N 3 NA B 1 3 3 NA NA . O 4 HOH A 1 1 1 HOH HOH . O 4 HOH A 2 8 8 HOH HOH . O 4 HOH A 3 9 9 HOH HOH . O 4 HOH A 4 10 10 HOH HOH . O 4 HOH A 5 11 11 HOH HOH . O 4 HOH A 6 12 12 HOH HOH . O 4 HOH A 7 13 13 HOH HOH . O 4 HOH A 8 15 15 HOH HOH . O 4 HOH A 9 16 16 HOH HOH . O 4 HOH A 10 17 17 HOH HOH . O 4 HOH A 11 114 4 HOH HOH . O 4 HOH A 12 115 5 HOH HOH . O 4 HOH A 13 116 21 HOH HOH . O 4 HOH A 14 117 22 HOH HOH . O 4 HOH A 15 118 24 HOH HOH . O 4 HOH A 16 119 25 HOH HOH . O 4 HOH A 17 120 30 HOH HOH . O 4 HOH A 18 121 32 HOH HOH . O 4 HOH A 19 122 37 HOH HOH . O 4 HOH A 20 123 39 HOH HOH . O 4 HOH A 21 124 40 HOH HOH . O 4 HOH A 22 125 67 HOH HOH . O 4 HOH A 23 126 43 HOH HOH . O 4 HOH A 24 127 44 HOH HOH . O 4 HOH A 25 128 36 HOH HOH . O 4 HOH A 26 129 48 HOH HOH . O 4 HOH A 27 130 51 HOH HOH . O 4 HOH A 28 131 55 HOH HOH . O 4 HOH A 29 132 56 HOH HOH . O 4 HOH A 30 133 57 HOH HOH . O 4 HOH A 31 134 59 HOH HOH . O 4 HOH A 32 135 60 HOH HOH . O 4 HOH A 33 136 61 HOH HOH . O 4 HOH A 34 137 62 HOH HOH . O 4 HOH A 35 138 63 HOH HOH . O 4 HOH A 36 139 64 HOH HOH . O 4 HOH A 37 140 65 HOH HOH . O 4 HOH A 38 141 66 HOH HOH . P 4 HOH B 1 6 6 HOH HOH . P 4 HOH B 2 7 7 HOH HOH . P 4 HOH B 3 14 14 HOH HOH . P 4 HOH B 4 114 2 HOH HOH . P 4 HOH B 5 115 3 HOH HOH . P 4 HOH B 6 116 18 HOH HOH . P 4 HOH B 7 117 19 HOH HOH . P 4 HOH B 8 118 20 HOH HOH . P 4 HOH B 9 119 23 HOH HOH . P 4 HOH B 10 120 26 HOH HOH . P 4 HOH B 11 121 27 HOH HOH . P 4 HOH B 12 122 28 HOH HOH . P 4 HOH B 13 123 29 HOH HOH . P 4 HOH B 14 124 31 HOH HOH . P 4 HOH B 15 125 42 HOH HOH . P 4 HOH B 16 126 34 HOH HOH . P 4 HOH B 17 127 35 HOH HOH . P 4 HOH B 18 128 46 HOH HOH . P 4 HOH B 19 129 38 HOH HOH . P 4 HOH B 20 130 41 HOH HOH . P 4 HOH B 21 131 45 HOH HOH . P 4 HOH B 22 132 47 HOH HOH . P 4 HOH B 23 133 49 HOH HOH . P 4 HOH B 24 134 50 HOH HOH . P 4 HOH B 25 135 52 HOH HOH . P 4 HOH B 26 136 53 HOH HOH . P 4 HOH B 27 137 54 HOH HOH . P 4 HOH B 28 138 58 HOH HOH . P 4 HOH B 29 139 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . J 2 -9.218 -10.911 -33.608 1 83.18 ? C1 MPD 503 B 1 HETATM 2 C C2 MPD . . . J 2 -7.694 -10.79 -33.679 1 79.54 ? C2 MPD 503 B 1 HETATM 3 O O2 MPD . . . J 2 -7.176 -10.504 -32.377 1 80.49 ? O2 MPD 503 B 1 HETATM 4 C CM MPD . . . J 2 -7.101 -12.103 -34.198 1 81.49 ? CM MPD 503 B 1 HETATM 5 C C3 MPD . . . J 2 -7.316 -9.651 -34.63 1 82.23 ? C3 MPD 503 B 1 HETATM 6 C C4 MPD . . . J 2 -8.009 -9.007 -35.83 1 81.96 ? C4 MPD 503 B 1 HETATM 7 O O4 MPD . . . J 2 -8.7 -7.83 -35.406 1 82.82 ? O4 MPD 503 B 1 HETATM 8 C C5 MPD . . . J 2 -6.972 -8.644 -36.895 1 82.53 ? C5 MPD 503 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #