data_3K0Y # _model_server_result.job_id ylYvYL7OqgtHMDfIqUg1jA _model_server_result.datetime_utc '2024-10-10 06:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3K0Y # _exptl.entry_id 3K0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3K0Y _cell.length_a 71.722 _cell.length_b 71.722 _cell.length_c 102.566 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 112 A ASN 136 1_555 A N MSE 113 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 113 A MSE 137 1_555 A N TRP 114 A TRP 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LYS 209 A LYS 233 1_555 A N MSE 210 A MSE 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ASP 227 A ASP 251 1_555 A N MSE 228 A MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 A C MSE 228 A MSE 252 1_555 A N LYS 229 A LYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K0Y _atom_sites.fract_transf_matrix[1][1] 0.013943 _atom_sites.fract_transf_matrix[1][2] 0.00805 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PE A 1 500 500 2PE 2PE . C 2 2PE A 1 501 501 2PE 2PE . D 3 HOH A 1 502 502 HOH HOH . D 3 HOH A 2 503 503 HOH HOH . D 3 HOH A 3 504 504 HOH HOH . D 3 HOH A 4 505 505 HOH HOH . D 3 HOH A 5 506 506 HOH HOH . D 3 HOH A 6 507 507 HOH HOH . D 3 HOH A 7 508 508 HOH HOH . D 3 HOH A 8 509 509 HOH HOH . D 3 HOH A 9 510 510 HOH HOH . D 3 HOH A 10 511 511 HOH HOH . D 3 HOH A 11 512 512 HOH HOH . D 3 HOH A 12 513 513 HOH HOH . D 3 HOH A 13 514 514 HOH HOH . D 3 HOH A 14 515 515 HOH HOH . D 3 HOH A 15 516 516 HOH HOH . D 3 HOH A 16 517 517 HOH HOH . D 3 HOH A 17 518 518 HOH HOH . D 3 HOH A 18 519 519 HOH HOH . D 3 HOH A 19 520 520 HOH HOH . D 3 HOH A 20 521 521 HOH HOH . D 3 HOH A 21 522 522 HOH HOH . D 3 HOH A 22 523 523 HOH HOH . D 3 HOH A 23 524 524 HOH HOH . D 3 HOH A 24 525 525 HOH HOH . D 3 HOH A 25 526 526 HOH HOH . D 3 HOH A 26 527 527 HOH HOH . D 3 HOH A 27 528 528 HOH HOH . D 3 HOH A 28 529 529 HOH HOH . D 3 HOH A 29 530 530 HOH HOH . D 3 HOH A 30 531 531 HOH HOH . D 3 HOH A 31 532 532 HOH HOH . D 3 HOH A 32 533 533 HOH HOH . D 3 HOH A 33 534 534 HOH HOH . D 3 HOH A 34 535 535 HOH HOH . D 3 HOH A 35 536 536 HOH HOH . D 3 HOH A 36 537 537 HOH HOH . D 3 HOH A 37 538 538 HOH HOH . D 3 HOH A 38 539 539 HOH HOH . D 3 HOH A 39 540 540 HOH HOH . D 3 HOH A 40 541 541 HOH HOH . D 3 HOH A 41 542 542 HOH HOH . D 3 HOH A 42 543 543 HOH HOH . D 3 HOH A 43 544 544 HOH HOH . D 3 HOH A 44 545 545 HOH HOH . D 3 HOH A 45 546 546 HOH HOH . D 3 HOH A 46 547 547 HOH HOH . D 3 HOH A 47 548 548 HOH HOH . D 3 HOH A 48 549 549 HOH HOH . D 3 HOH A 49 550 550 HOH HOH . D 3 HOH A 50 551 551 HOH HOH . D 3 HOH A 51 552 552 HOH HOH . D 3 HOH A 52 553 553 HOH HOH . D 3 HOH A 53 554 554 HOH HOH . D 3 HOH A 54 555 555 HOH HOH . D 3 HOH A 55 556 556 HOH HOH . D 3 HOH A 56 557 557 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . B 2 63.783 20.549 18.659 0.5 61.72 ? O1 2PE 500 A 1 HETATM 2 C C2 2PE . . . B 2 63.164 21.771 18.227 0.5 61.15 ? C2 2PE 500 A 1 HETATM 3 C C3 2PE . . . B 2 61.778 21.901 18.896 0.5 61.39 ? C3 2PE 500 A 1 HETATM 4 O O4 2PE . . . B 2 60.732 21.425 18.052 0.5 63.57 ? O4 2PE 500 A 1 HETATM 5 C C5 2PE . . . B 2 60.174 22.225 17.008 0.5 64 ? C5 2PE 500 A 1 HETATM 6 C C6 2PE . . . B 2 58.649 21.949 16.952 0.5 64.19 ? C6 2PE 500 A 1 HETATM 7 O O7 2PE . . . B 2 58.344 21.123 15.834 0.5 64.52 ? O7 2PE 500 A 1 HETATM 8 C C8 2PE . . . B 2 57.142 20.356 15.77 0.5 62.95 ? C8 2PE 500 A 1 HETATM 9 C C9 2PE . . . B 2 57.426 18.837 15.627 0.5 62.06 ? C9 2PE 500 A 1 HETATM 10 O O10 2PE . . . B 2 58.576 18.617 14.831 0.5 61.23 ? O10 2PE 500 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #