data_3K1O
#
_model_server_result.job_id            nGPEgAJDZBRzpqiX9NBlfw 
_model_server_result.datetime_utc      '2024-10-13 15:18:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":490}' 
#
_entry.id    3K1O 
#
_exptl.entry_id    3K1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              700.777 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5-anhydro-1,3,4-trideoxy-2-(2,4-difluorophenyl)-6-O-{4-[4-(4-{1-[(1S,2S)-1-ethyl-2-hydroxypropyl]-5-oxo-1,5-dihydro-4H-1,2,4-triazol-4-yl}phenyl)piperazin-1-yl]phenyl}-1-(1H-1,2,4-triazol-1-yl)-D-erythro-hexitol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3K1O 
_cell.length_a            63.121 
_cell.length_b            63.121 
_cell.length_c            229.302 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 393 A CYS 422 1_555 B FE HEM . A HEM 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc2 B FE HEM . A HEM 488 1_555 C NBD POZ . A POZ 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
#
_chem_comp.formula           'C37 H42 F2 N8 O4' 
_chem_comp.formula_weight    700.777 
_chem_comp.id                POZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5-anhydro-1,3,4-trideoxy-2-(2,4-difluorophenyl)-6-O-{4-[4-(4-{1-[(1S,2S)-1-ethyl-2-hydroxypropyl]-5-oxo-1,5-dihydro-4H-1,2,4-triazol-4-yl}phenyl)piperazin-1-yl]phenyl}-1-(1H-1,2,4-triazol-1-yl)-D-erythro-hexitol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAU POZ sing 342 n n 
CAA HAA POZ sing 343 n n 
CAA HAAA POZ sing 344 n n 
CAA HAAB POZ sing 345 n n 
CBQ CAB POZ sing 346 n n 
CAB HAB POZ sing 347 n n 
CAB HABA POZ sing 348 n n 
CAB HABB POZ sing 349 n n 
OAC CBP POZ doub 350 n n 
OAD CBQ POZ sing 351 n n 
OAD HOAD POZ sing 352 n n 
FAE CBI POZ sing 353 n n 
CAP FAF POZ sing 354 n n 
CBI CAG POZ doub 355 n y 
CAG CAP POZ sing 356 n y 
CAG HAG POZ sing 357 n n 
CAH CBK POZ doub 358 n y 
CAH CAJ POZ sing 359 n y 
CAH HAH POZ sing 360 n n 
CBK CAI POZ sing 361 n y 
CAI CAK POZ doub 362 n y 
CAI HAI POZ sing 363 n n 
CAJ CBL POZ doub 364 n y 
CAJ HAJ POZ sing 365 n n 
CBL CAK POZ sing 366 n y 
CAK HAK POZ sing 367 n n 
CBM CAL POZ doub 368 n y 
CAL CAN POZ sing 369 n y 
CAL HAL POZ sing 370 n n 
CBM CAM POZ sing 371 n y 
CAM CAO POZ doub 372 n y 
CAM HAM POZ sing 373 n n 
CAN CBN POZ doub 374 n y 
CAN HAN POZ sing 375 n n 
CAO CBN POZ sing 376 n y 
CAO HAO POZ sing 377 n n 
CBO CAP POZ doub 378 n y 
NBD CAQ POZ sing 379 n y 
CAQ NBE POZ doub 380 n y 
CAQ HAQ POZ sing 381 n n 
CAR CBJ POZ doub 382 n y 
CAR CBI POZ sing 383 n y 
CAR HAR POZ sing 384 n n 
NBD CAS POZ doub 385 n y 
CAS NBV POZ sing 386 n y 
CAS HAS POZ sing 387 n n 
NBW CAT POZ sing 388 n n 
CAT NBF POZ doub 389 n n 
CAT HAT POZ sing 390 n n 
CAU CBS POZ sing 391 n n 
CAU HAU POZ sing 392 n n 
CAU HAUA POZ sing 393 n n 
CBA CAV POZ sing 394 n n 
CAV CBR POZ sing 395 n n 
CAV HAV POZ sing 396 n n 
CAV HAVA POZ sing 397 n n 
NBT CAW POZ sing 398 n n 
CAW CAY POZ sing 399 n n 
CAW HAW POZ sing 400 n n 
CAW HAWA POZ sing 401 n n 
NBT CAX POZ sing 402 n n 
CAX CAZ POZ sing 403 n n 
CAX HAX POZ sing 404 n n 
CAX HAXA POZ sing 405 n n 
CAY NBU POZ sing 406 n n 
CAY HAY POZ sing 407 n n 
CAY HAYA POZ sing 408 n n 
CAZ NBU POZ sing 409 n n 
CAZ HAZ POZ sing 410 n n 
CAZ HAZA POZ sing 411 n n 
CBA CBY POZ sing 412 n n 
CBA HBA POZ sing 413 n n 
CBA HBAA POZ sing 414 n n 
CBR CBB POZ sing 415 n n 
CBB OBG POZ sing 416 n n 
CBB HBB POZ sing 417 n n 
CBB HBBA POZ sing 418 n n 
CBY CBC POZ sing 419 n n 
NBV CBC POZ sing 420 n n 
CBC HBC POZ sing 421 n n 
CBC HBCA POZ sing 422 n n 
NBV NBE POZ sing 423 n y 
NBF NBX POZ sing 424 n n 
OBG CBK POZ sing 425 n n 
CBY OBH POZ sing 426 n n 
CBR OBH POZ sing 427 n n 
CBJ CBO POZ sing 428 n y 
CBJ HBJ POZ sing 429 n n 
CBL NBT POZ sing 430 n n 
NBU CBM POZ sing 431 n n 
CBN NBW POZ sing 432 n n 
CBO CBY POZ sing 433 n n 
NBW CBP POZ sing 434 n n 
CBP NBX POZ sing 435 n n 
CBS CBQ POZ sing 436 n n 
CBQ HBQ POZ sing 437 n n 
CBR HBR POZ sing 438 n n 
NBX CBS POZ sing 439 n n 
CBS HBS POZ sing 440 n n 
#
_atom_sites.entry_id                     3K1O 
_atom_sites.fract_transf_matrix[1][1]    0.015843 
_atom_sites.fract_transf_matrix[1][2]    0.009147 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018293 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 488 488 HEM HEM . 
C 3 POZ A 1 490 490 POZ POZ . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 5 5 HOH HOH . 
D 4 HOH A 4 7 7 HOH HOH . 
D 4 HOH A 5 8 8 HOH HOH . 
D 4 HOH A 6 9 9 HOH HOH . 
D 4 HOH A 7 11 11 HOH HOH . 
D 4 HOH A 8 12 12 HOH HOH . 
D 4 HOH A 9 13 13 HOH HOH . 
D 4 HOH A 10 14 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA POZ . . . C 3 -51.786 1.338 -6.451 1 119.98 ? CAA POZ 490 A 1 
HETATM 2 C CAB POZ . . . C 3 -48.405 1.867 -4.117 1 122.88 ? CAB POZ 490 A 1 
HETATM 3 O OAC POZ . . . C 3 -50.031 4.594 -8.113 1 121.59 ? OAC POZ 490 A 1 
HETATM 4 O OAD POZ . . . C 3 -49.813 0.563 -5.555 1 124.47 ? OAD POZ 490 A 1 
HETATM 5 F FAE POZ . . . C 3 -36.199 15.065 -21.476 1 86.66 ? FAE POZ 490 A 1 
HETATM 6 F FAF POZ . . . C 3 -37.729 12.344 -18.041 1 91.73 ? FAF POZ 490 A 1 
HETATM 7 C CAG POZ . . . C 3 -36.931 13.737 -19.724 1 86.18 ? CAG POZ 490 A 1 
HETATM 8 C CAH POZ . . . C 3 -43.305 7.666 -17.461 1 89.76 ? CAH POZ 490 A 1 
HETATM 9 C CAI POZ . . . C 3 -44.224 9.596 -16.467 1 86.88 ? CAI POZ 490 A 1 
HETATM 10 C CAJ POZ . . . C 3 -44.258 6.872 -16.858 1 92.49 ? CAJ POZ 490 A 1 
HETATM 11 C CAK POZ . . . C 3 -45.194 8.8 -15.854 1 91.56 ? CAK POZ 490 A 1 
HETATM 12 C CAL POZ . . . C 3 -46.613 3.764 -11.694 1 114.7 ? CAL POZ 490 A 1 
HETATM 13 C CAM POZ . . . C 3 -48.66 5.011 -11.713 1 113.99 ? CAM POZ 490 A 1 
HETATM 14 C CAN POZ . . . C 3 -46.97 3.197 -10.491 1 117.88 ? CAN POZ 490 A 1 
HETATM 15 C CAO POZ . . . C 3 -49.024 4.438 -10.507 1 116.64 ? CAO POZ 490 A 1 
HETATM 16 C CAP POZ . . . C 3 -37.683 12.679 -19.313 1 86.4 ? CAP POZ 490 A 1 
HETATM 17 C CAQ POZ . . . C 3 -35.165 8.692 -19.869 1 61.37 ? CAQ POZ 490 A 1 
HETATM 18 C CAR POZ . . . C 3 -37.646 13.3 -21.955 1 85.06 ? CAR POZ 490 A 1 
HETATM 19 C CAS POZ . . . C 3 -36.92 9.158 -20.893 1 62.8 ? CAS POZ 490 A 1 
HETATM 20 C CAT POZ . . . C 3 -47.94 1.908 -8.2 1 122.96 ? CAT POZ 490 A 1 
HETATM 21 C CAU POZ . . . C 3 -51.532 2.784 -6.077 1 121.96 ? CAU POZ 490 A 1 
HETATM 22 C CAV POZ . . . C 3 -41.235 9.834 -19.954 1 78.14 ? CAV POZ 490 A 1 
HETATM 23 C CAW POZ . . . C 3 -46.956 7.204 -14.484 1 102.31 ? CAW POZ 490 A 1 
HETATM 24 C CAX POZ . . . C 3 -45.484 5.329 -15.105 1 102.22 ? CAX POZ 490 A 1 
HETATM 25 C CAY POZ . . . C 3 -47.957 6.176 -13.998 1 103.86 ? CAY POZ 490 A 1 
HETATM 26 C CAZ POZ . . . C 3 -46.497 4.4 -14.449 1 105.4 ? CAZ POZ 490 A 1 
HETATM 27 C CBA POZ . . . C 3 -39.966 10.115 -20.698 1 75.88 ? CBA POZ 490 A 1 
HETATM 28 C CBB POZ . . . C 3 -42.475 10.987 -18.306 1 77.47 ? CBB POZ 490 A 1 
HETATM 29 C CBC POZ . . . C 3 -38.239 9.877 -18.91 1 70.08 ? CBC POZ 490 A 1 
HETATM 30 N NBD POZ . . . C 3 -35.71 8.689 -21.045 1 59.59 ? NBD POZ 490 A 1 
HETATM 31 N NBE POZ . . . C 3 -36.057 9.114 -19.013 1 62.43 ? NBE POZ 490 A 1 
HETATM 32 N NBF POZ . . . C 3 -48.517 1.784 -7.011 1 124.19 ? NBF POZ 490 A 1 
HETATM 33 O OBG POZ . . . C 3 -42.272 9.687 -17.913 1 79.37 ? OBG POZ 490 A 1 
HETATM 34 O OBH POZ . . . C 3 -40.09 11.302 -18.707 1 75.63 ? OBH POZ 490 A 1 
HETATM 35 C CBI POZ . . . C 3 -36.922 14.036 -21.055 1 85.12 ? CBI POZ 490 A 1 
HETATM 36 C CBJ POZ . . . C 3 -38.394 12.234 -21.527 1 84.24 ? CBJ POZ 490 A 1 
HETATM 37 C CBK POZ . . . C 3 -43.271 9.025 -17.282 1 85.65 ? CBK POZ 490 A 1 
HETATM 38 C CBL POZ . . . C 3 -45.208 7.425 -16.04 1 96.04 ? CBL POZ 490 A 1 
HETATM 39 C CBM POZ . . . C 3 -47.47 4.648 -12.302 1 111.64 ? CBM POZ 490 A 1 
HETATM 40 C CBN POZ . . . C 3 -48.175 3.527 -9.914 1 119.26 ? CBN POZ 490 A 1 
HETATM 41 C CBO POZ . . . C 3 -38.398 11.942 -20.192 1 81.24 ? CBO POZ 490 A 1 
HETATM 42 C CBP POZ . . . C 3 -49.294 3.493 -7.909 1 122.68 ? CBP POZ 490 A 1 
HETATM 43 C CBQ POZ . . . C 3 -49.777 1.726 -4.755 1 123.52 ? CBQ POZ 490 A 1 
HETATM 44 C CBR POZ . . . C 3 -41.369 11.318 -19.294 1 77.49 ? CBR POZ 490 A 1 
HETATM 45 C CBS POZ . . . C 3 -50.096 2.893 -5.658 1 123.48 ? CBS POZ 490 A 1 
HETATM 46 N NBT POZ . . . C 3 -46.116 6.592 -15.516 1 100.21 ? NBT POZ 490 A 1 
HETATM 47 N NBU POZ . . . C 3 -47.065 5.215 -13.408 1 107.36 ? NBU POZ 490 A 1 
HETATM 48 N NBV POZ . . . C 3 -37.063 9.397 -19.617 1 65.09 ? NBV POZ 490 A 1 
HETATM 49 N NBW POZ . . . C 3 -48.47 2.969 -8.767 1 121.76 ? NBW POZ 490 A 1 
HETATM 50 N NBX POZ . . . C 3 -49.29 2.721 -6.85 1 123.88 ? NBX POZ 490 A 1 
HETATM 51 C CBY POZ . . . C 3 -39.174 10.809 -19.643 1 75.81 ? CBY POZ 490 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           544 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           51 
#