data_3K2D # _model_server_result.job_id 1sxdkzqGz7xax3QhSgcg1Q _model_server_result.datetime_utc '2024-12-29 01:11:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":266}' # _entry.id 3K2D # _exptl.entry_id 3K2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K2D _cell.length_a 273.6 _cell.length_b 273.6 _cell.length_c 273.6 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 205 n n N H MET sing 206 n n N H2 MET sing 207 n n CA C MET sing 208 n n CA CB MET sing 209 n n CA HA MET sing 210 n n C O MET doub 211 n n C OXT MET sing 212 n n CB CG MET sing 213 n n CB HB2 MET sing 214 n n CB HB3 MET sing 215 n n CG SD MET sing 216 n n CG HG2 MET sing 217 n n CG HG3 MET sing 218 n n SD CE MET sing 219 n n CE HE1 MET sing 220 n n CE HE2 MET sing 221 n n CE HE3 MET sing 222 n n OXT HXT MET sing 223 n n # _atom_sites.entry_id 3K2D _atom_sites.fract_transf_matrix[1][1] 0.003655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MET A 1 266 266 MET FME . D 2 MET B 1 266 266 MET FME . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 2 2 HOH HOH . E 3 HOH A 3 3 3 HOH HOH . E 3 HOH A 4 4 4 HOH HOH . E 3 HOH A 5 5 5 HOH HOH . E 3 HOH A 6 6 6 HOH HOH . E 3 HOH A 7 7 7 HOH HOH . E 3 HOH A 8 10 10 HOH HOH . E 3 HOH A 9 11 11 HOH HOH . E 3 HOH A 10 12 12 HOH HOH . E 3 HOH A 11 13 13 HOH HOH . E 3 HOH A 12 14 14 HOH HOH . E 3 HOH A 13 15 15 HOH HOH . E 3 HOH A 14 16 16 HOH HOH . E 3 HOH A 15 17 17 HOH HOH . E 3 HOH A 16 18 18 HOH HOH . E 3 HOH A 17 19 19 HOH HOH . E 3 HOH A 18 21 21 HOH HOH . E 3 HOH A 19 23 23 HOH HOH . E 3 HOH A 20 25 25 HOH HOH . E 3 HOH A 21 263 26 HOH HOH . E 3 HOH A 22 264 27 HOH HOH . E 3 HOH A 23 265 28 HOH HOH . E 3 HOH A 24 267 29 HOH HOH . E 3 HOH A 25 268 30 HOH HOH . E 3 HOH A 26 269 31 HOH HOH . E 3 HOH A 27 270 33 HOH HOH . E 3 HOH A 28 271 34 HOH HOH . E 3 HOH A 29 272 35 HOH HOH . E 3 HOH A 30 273 36 HOH HOH . E 3 HOH A 31 274 37 HOH HOH . E 3 HOH A 32 275 39 HOH HOH . E 3 HOH A 33 276 41 HOH HOH . E 3 HOH A 34 277 42 HOH HOH . E 3 HOH A 35 278 43 HOH HOH . E 3 HOH A 36 279 44 HOH HOH . E 3 HOH A 37 280 45 HOH HOH . E 3 HOH A 38 281 47 HOH HOH . E 3 HOH A 39 282 48 HOH HOH . E 3 HOH A 40 283 49 HOH HOH . E 3 HOH A 41 284 50 HOH HOH . E 3 HOH A 42 285 52 HOH HOH . E 3 HOH A 43 286 53 HOH HOH . E 3 HOH A 44 287 54 HOH HOH . E 3 HOH A 45 288 55 HOH HOH . E 3 HOH A 46 289 56 HOH HOH . E 3 HOH A 47 290 57 HOH HOH . E 3 HOH A 48 291 63 HOH HOH . E 3 HOH A 49 292 65 HOH HOH . E 3 HOH A 50 293 66 HOH HOH . E 3 HOH A 51 294 67 HOH HOH . E 3 HOH A 52 295 68 HOH HOH . E 3 HOH A 53 296 69 HOH HOH . E 3 HOH A 54 297 70 HOH HOH . E 3 HOH A 55 298 71 HOH HOH . E 3 HOH A 56 299 72 HOH HOH . E 3 HOH A 57 300 73 HOH HOH . E 3 HOH A 58 301 74 HOH HOH . E 3 HOH A 59 302 76 HOH HOH . E 3 HOH A 60 303 78 HOH HOH . E 3 HOH A 61 304 82 HOH HOH . E 3 HOH A 62 305 83 HOH HOH . E 3 HOH A 63 306 84 HOH HOH . E 3 HOH A 64 307 85 HOH HOH . E 3 HOH A 65 308 86 HOH HOH . E 3 HOH A 66 309 88 HOH HOH . E 3 HOH A 67 310 89 HOH HOH . E 3 HOH A 68 311 90 HOH HOH . E 3 HOH A 69 312 92 HOH HOH . E 3 HOH A 70 313 93 HOH HOH . E 3 HOH A 71 314 94 HOH HOH . E 3 HOH A 72 315 95 HOH HOH . E 3 HOH A 73 316 99 HOH HOH . E 3 HOH A 74 317 103 HOH HOH . E 3 HOH A 75 318 104 HOH HOH . E 3 HOH A 76 319 105 HOH HOH . E 3 HOH A 77 320 106 HOH HOH . E 3 HOH A 78 321 107 HOH HOH . E 3 HOH A 79 322 110 HOH HOH . E 3 HOH A 80 323 112 HOH HOH . E 3 HOH A 81 324 113 HOH HOH . E 3 HOH A 82 325 117 HOH HOH . E 3 HOH A 83 326 118 HOH HOH . E 3 HOH A 84 327 120 HOH HOH . E 3 HOH A 85 328 121 HOH HOH . E 3 HOH A 86 329 123 HOH HOH . E 3 HOH A 87 330 124 HOH HOH . E 3 HOH A 88 331 125 HOH HOH . E 3 HOH A 89 332 126 HOH HOH . E 3 HOH A 90 333 129 HOH HOH . E 3 HOH A 91 334 130 HOH HOH . E 3 HOH A 92 335 132 HOH HOH . E 3 HOH A 93 336 134 HOH HOH . E 3 HOH A 94 337 135 HOH HOH . E 3 HOH A 95 338 136 HOH HOH . E 3 HOH A 96 339 139 HOH HOH . E 3 HOH A 97 340 141 HOH HOH . E 3 HOH A 98 341 142 HOH HOH . E 3 HOH A 99 342 143 HOH HOH . E 3 HOH A 100 343 145 HOH HOH . E 3 HOH A 101 344 146 HOH HOH . E 3 HOH A 102 345 147 HOH HOH . E 3 HOH A 103 346 148 HOH HOH . E 3 HOH A 104 347 149 HOH HOH . E 3 HOH A 105 348 151 HOH HOH . E 3 HOH A 106 349 152 HOH HOH . E 3 HOH A 107 350 155 HOH HOH . F 3 HOH B 1 8 8 HOH HOH . F 3 HOH B 2 9 9 HOH HOH . F 3 HOH B 3 20 20 HOH HOH . F 3 HOH B 4 22 22 HOH HOH . F 3 HOH B 5 24 24 HOH HOH . F 3 HOH B 6 263 32 HOH HOH . F 3 HOH B 7 264 38 HOH HOH . F 3 HOH B 8 265 40 HOH HOH . F 3 HOH B 9 267 46 HOH HOH . F 3 HOH B 10 268 51 HOH HOH . F 3 HOH B 11 269 58 HOH HOH . F 3 HOH B 12 270 59 HOH HOH . F 3 HOH B 13 271 60 HOH HOH . F 3 HOH B 14 272 61 HOH HOH . F 3 HOH B 15 273 62 HOH HOH . F 3 HOH B 16 274 64 HOH HOH . F 3 HOH B 17 275 75 HOH HOH . F 3 HOH B 18 276 77 HOH HOH . F 3 HOH B 19 277 79 HOH HOH . F 3 HOH B 20 278 80 HOH HOH . F 3 HOH B 21 279 81 HOH HOH . F 3 HOH B 22 280 87 HOH HOH . F 3 HOH B 23 281 91 HOH HOH . F 3 HOH B 24 282 96 HOH HOH . F 3 HOH B 25 283 97 HOH HOH . F 3 HOH B 26 284 98 HOH HOH . F 3 HOH B 27 285 100 HOH HOH . F 3 HOH B 28 286 101 HOH HOH . F 3 HOH B 29 287 102 HOH HOH . F 3 HOH B 30 288 108 HOH HOH . F 3 HOH B 31 289 109 HOH HOH . F 3 HOH B 32 290 111 HOH HOH . F 3 HOH B 33 291 114 HOH HOH . F 3 HOH B 34 292 115 HOH HOH . F 3 HOH B 35 293 116 HOH HOH . F 3 HOH B 36 294 119 HOH HOH . F 3 HOH B 37 295 122 HOH HOH . F 3 HOH B 38 296 127 HOH HOH . F 3 HOH B 39 297 128 HOH HOH . F 3 HOH B 40 298 131 HOH HOH . F 3 HOH B 41 299 133 HOH HOH . F 3 HOH B 42 300 137 HOH HOH . F 3 HOH B 43 301 138 HOH HOH . F 3 HOH B 44 302 140 HOH HOH . F 3 HOH B 45 303 144 HOH HOH . F 3 HOH B 46 304 150 HOH HOH . F 3 HOH B 47 305 153 HOH HOH . F 3 HOH B 48 306 154 HOH HOH . F 3 HOH B 49 307 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . C 2 -22.941 14.988 46.014 1 11.46 ? N MET 266 A 1 HETATM 2 C CA MET . . . C 2 -23.916 14.712 44.89 1 12.66 ? CA MET 266 A 1 HETATM 3 C C MET . . . C 2 -24.969 13.807 45.424 1 13.5 ? C MET 266 A 1 HETATM 4 O O MET . . . C 2 -24.628 12.838 46.156 1 11.22 ? O MET 266 A 1 HETATM 5 C CB MET . . . C 2 -23.318 13.978 43.707 1 11.7 ? CB MET 266 A 1 HETATM 6 C CG MET . . . C 2 -22.269 14.712 43.001 1 8.93 ? CG MET 266 A 1 HETATM 7 S SD MET . . . C 2 -21.996 14.056 41.393 1 1 ? SD MET 266 A 1 HETATM 8 C CE MET . . . C 2 -20.765 15.268 41.083 1 1.77 ? CE MET 266 A 1 HETATM 9 O OXT MET . . . C 2 -26.148 14.023 45.106 1 15.33 ? OXT MET 266 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #