data_3K2E # _model_server_result.job_id mwDjez0I1FJRTmdjF3anfw _model_server_result.datetime_utc '2024-10-15 12:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 3K2E # _exptl.entry_id 3K2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K2E _cell.length_a 80 _cell.length_b 89.4 _cell.length_c 78.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 80 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3K2E _atom_sites.fract_transf_matrix[1][1] 0.0125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 400 400 EDO EDO . D 2 EDO A 1 401 401 EDO EDO . E 3 GOL A 1 300 300 GOL GOL . F 3 GOL A 1 301 301 GOL GOL . G 2 EDO B 1 400 400 EDO EDO . H 2 EDO B 1 401 401 EDO EDO . I 2 EDO B 1 402 402 EDO EDO . J 3 GOL B 1 300 300 GOL GOL . K 3 GOL B 1 301 301 GOL GOL . L 4 HOH A 1 276 276 HOH HOH . L 4 HOH A 2 277 277 HOH HOH . L 4 HOH A 3 278 278 HOH HOH . L 4 HOH A 4 279 279 HOH HOH . L 4 HOH A 5 280 280 HOH HOH . L 4 HOH A 6 281 1 HOH HOH . L 4 HOH A 7 282 2 HOH HOH . L 4 HOH A 8 283 283 HOH HOH . L 4 HOH A 9 284 284 HOH HOH . L 4 HOH A 10 285 4 HOH HOH . L 4 HOH A 11 286 286 HOH HOH . L 4 HOH A 12 287 287 HOH HOH . L 4 HOH A 13 288 288 HOH HOH . L 4 HOH A 14 289 289 HOH HOH . L 4 HOH A 15 290 290 HOH HOH . L 4 HOH A 16 291 291 HOH HOH . L 4 HOH A 17 292 292 HOH HOH . L 4 HOH A 18 293 6 HOH HOH . L 4 HOH A 19 294 294 HOH HOH . L 4 HOH A 20 295 295 HOH HOH . L 4 HOH A 21 296 296 HOH HOH . L 4 HOH A 22 297 297 HOH HOH . L 4 HOH A 23 298 298 HOH HOH . L 4 HOH A 24 299 299 HOH HOH . L 4 HOH A 25 302 302 HOH HOH . L 4 HOH A 26 303 303 HOH HOH . L 4 HOH A 27 304 304 HOH HOH . L 4 HOH A 28 305 305 HOH HOH . L 4 HOH A 29 306 306 HOH HOH . L 4 HOH A 30 307 307 HOH HOH . L 4 HOH A 31 308 308 HOH HOH . L 4 HOH A 32 309 309 HOH HOH . L 4 HOH A 33 310 310 HOH HOH . L 4 HOH A 34 311 311 HOH HOH . L 4 HOH A 35 312 10 HOH HOH . L 4 HOH A 36 313 16 HOH HOH . L 4 HOH A 37 314 19 HOH HOH . L 4 HOH A 38 315 20 HOH HOH . L 4 HOH A 39 316 21 HOH HOH . L 4 HOH A 40 317 25 HOH HOH . L 4 HOH A 41 318 28 HOH HOH . L 4 HOH A 42 319 29 HOH HOH . L 4 HOH A 43 320 31 HOH HOH . L 4 HOH A 44 321 32 HOH HOH . L 4 HOH A 45 322 34 HOH HOH . L 4 HOH A 46 323 35 HOH HOH . L 4 HOH A 47 324 37 HOH HOH . L 4 HOH A 48 325 40 HOH HOH . L 4 HOH A 49 326 41 HOH HOH . L 4 HOH A 50 327 42 HOH HOH . L 4 HOH A 51 328 44 HOH HOH . L 4 HOH A 52 329 46 HOH HOH . L 4 HOH A 53 330 49 HOH HOH . L 4 HOH A 54 331 50 HOH HOH . L 4 HOH A 55 332 56 HOH HOH . L 4 HOH A 56 333 57 HOH HOH . L 4 HOH A 57 334 60 HOH HOH . L 4 HOH A 58 335 61 HOH HOH . L 4 HOH A 59 336 62 HOH HOH . L 4 HOH A 60 337 64 HOH HOH . L 4 HOH A 61 338 66 HOH HOH . L 4 HOH A 62 339 67 HOH HOH . L 4 HOH A 63 340 340 HOH HOH . L 4 HOH A 64 341 341 HOH HOH . L 4 HOH A 65 342 342 HOH HOH . L 4 HOH A 66 343 343 HOH HOH . L 4 HOH A 67 344 344 HOH HOH . L 4 HOH A 68 345 345 HOH HOH . L 4 HOH A 69 346 346 HOH HOH . L 4 HOH A 70 347 74 HOH HOH . L 4 HOH A 71 348 348 HOH HOH . L 4 HOH A 72 349 349 HOH HOH . L 4 HOH A 73 350 350 HOH HOH . L 4 HOH A 74 351 76 HOH HOH . L 4 HOH A 75 352 352 HOH HOH . L 4 HOH A 76 353 77 HOH HOH . L 4 HOH A 77 354 78 HOH HOH . L 4 HOH A 78 355 79 HOH HOH . L 4 HOH A 79 356 80 HOH HOH . L 4 HOH A 80 357 82 HOH HOH . L 4 HOH A 81 358 83 HOH HOH . L 4 HOH A 82 359 84 HOH HOH . L 4 HOH A 83 360 87 HOH HOH . L 4 HOH A 84 361 361 HOH HOH . L 4 HOH A 85 362 88 HOH HOH . L 4 HOH A 86 363 89 HOH HOH . L 4 HOH A 87 364 90 HOH HOH . L 4 HOH A 88 365 91 HOH HOH . L 4 HOH A 89 366 92 HOH HOH . L 4 HOH A 90 367 93 HOH HOH . L 4 HOH A 91 368 95 HOH HOH . L 4 HOH A 92 369 99 HOH HOH . L 4 HOH A 93 370 100 HOH HOH . L 4 HOH A 94 371 101 HOH HOH . L 4 HOH A 95 372 104 HOH HOH . L 4 HOH A 96 373 106 HOH HOH . L 4 HOH A 97 374 107 HOH HOH . L 4 HOH A 98 375 110 HOH HOH . L 4 HOH A 99 376 111 HOH HOH . L 4 HOH A 100 377 112 HOH HOH . L 4 HOH A 101 378 115 HOH HOH . L 4 HOH A 102 379 116 HOH HOH . L 4 HOH A 103 380 117 HOH HOH . L 4 HOH A 104 381 121 HOH HOH . L 4 HOH A 105 382 123 HOH HOH . L 4 HOH A 106 383 124 HOH HOH . L 4 HOH A 107 384 126 HOH HOH . L 4 HOH A 108 385 128 HOH HOH . L 4 HOH A 109 386 129 HOH HOH . L 4 HOH A 110 387 130 HOH HOH . L 4 HOH A 111 388 132 HOH HOH . L 4 HOH A 112 389 133 HOH HOH . L 4 HOH A 113 390 136 HOH HOH . L 4 HOH A 114 391 143 HOH HOH . L 4 HOH A 115 392 146 HOH HOH . L 4 HOH A 116 393 147 HOH HOH . L 4 HOH A 117 394 151 HOH HOH . L 4 HOH A 118 395 154 HOH HOH . L 4 HOH A 119 396 156 HOH HOH . L 4 HOH A 120 397 157 HOH HOH . L 4 HOH A 121 398 158 HOH HOH . L 4 HOH A 122 399 159 HOH HOH . L 4 HOH A 123 402 163 HOH HOH . L 4 HOH A 124 403 164 HOH HOH . L 4 HOH A 125 404 167 HOH HOH . L 4 HOH A 126 405 172 HOH HOH . L 4 HOH A 127 406 175 HOH HOH . L 4 HOH A 128 407 177 HOH HOH . L 4 HOH A 129 408 181 HOH HOH . L 4 HOH A 130 409 182 HOH HOH . L 4 HOH A 131 410 185 HOH HOH . L 4 HOH A 132 411 189 HOH HOH . L 4 HOH A 133 412 193 HOH HOH . L 4 HOH A 134 413 199 HOH HOH . L 4 HOH A 135 414 200 HOH HOH . L 4 HOH A 136 415 205 HOH HOH . L 4 HOH A 137 416 208 HOH HOH . L 4 HOH A 138 417 212 HOH HOH . L 4 HOH A 139 418 213 HOH HOH . L 4 HOH A 140 419 219 HOH HOH . L 4 HOH A 141 420 224 HOH HOH . L 4 HOH A 142 421 225 HOH HOH . L 4 HOH A 143 422 227 HOH HOH . L 4 HOH A 144 423 228 HOH HOH . L 4 HOH A 145 424 232 HOH HOH . L 4 HOH A 146 425 236 HOH HOH . L 4 HOH A 147 426 238 HOH HOH . L 4 HOH A 148 427 241 HOH HOH . L 4 HOH A 149 428 244 HOH HOH . L 4 HOH A 150 429 246 HOH HOH . L 4 HOH A 151 430 248 HOH HOH . L 4 HOH A 152 431 250 HOH HOH . L 4 HOH A 153 432 251 HOH HOH . L 4 HOH A 154 433 252 HOH HOH . L 4 HOH A 155 434 254 HOH HOH . L 4 HOH A 156 435 256 HOH HOH . L 4 HOH A 157 436 257 HOH HOH . L 4 HOH A 158 437 262 HOH HOH . L 4 HOH A 159 438 267 HOH HOH . L 4 HOH A 160 439 269 HOH HOH . L 4 HOH A 161 440 271 HOH HOH . L 4 HOH A 162 441 275 HOH HOH . L 4 HOH A 163 442 300 HOH HOH . L 4 HOH A 164 443 301 HOH HOH . M 4 HOH B 1 276 3 HOH HOH . M 4 HOH B 2 277 5 HOH HOH . M 4 HOH B 3 278 7 HOH HOH . M 4 HOH B 4 279 8 HOH HOH . M 4 HOH B 5 280 9 HOH HOH . M 4 HOH B 6 281 11 HOH HOH . M 4 HOH B 7 282 12 HOH HOH . M 4 HOH B 8 283 13 HOH HOH . M 4 HOH B 9 284 14 HOH HOH . M 4 HOH B 10 285 15 HOH HOH . M 4 HOH B 11 286 17 HOH HOH . M 4 HOH B 12 287 18 HOH HOH . M 4 HOH B 13 288 22 HOH HOH . M 4 HOH B 14 289 23 HOH HOH . M 4 HOH B 15 290 24 HOH HOH . M 4 HOH B 16 291 26 HOH HOH . M 4 HOH B 17 292 27 HOH HOH . M 4 HOH B 18 293 30 HOH HOH . M 4 HOH B 19 294 33 HOH HOH . M 4 HOH B 20 295 36 HOH HOH . M 4 HOH B 21 296 38 HOH HOH . M 4 HOH B 22 297 39 HOH HOH . M 4 HOH B 23 298 43 HOH HOH . M 4 HOH B 24 299 45 HOH HOH . M 4 HOH B 25 302 47 HOH HOH . M 4 HOH B 26 303 48 HOH HOH . M 4 HOH B 27 304 51 HOH HOH . M 4 HOH B 28 305 52 HOH HOH . M 4 HOH B 29 306 53 HOH HOH . M 4 HOH B 30 307 54 HOH HOH . M 4 HOH B 31 308 58 HOH HOH . M 4 HOH B 32 309 59 HOH HOH . M 4 HOH B 33 310 63 HOH HOH . M 4 HOH B 34 311 65 HOH HOH . M 4 HOH B 35 312 312 HOH HOH . M 4 HOH B 36 313 313 HOH HOH . M 4 HOH B 37 314 314 HOH HOH . M 4 HOH B 38 315 315 HOH HOH . M 4 HOH B 39 316 316 HOH HOH . M 4 HOH B 40 317 317 HOH HOH . M 4 HOH B 41 318 318 HOH HOH . M 4 HOH B 42 319 319 HOH HOH . M 4 HOH B 43 320 320 HOH HOH . M 4 HOH B 44 321 68 HOH HOH . M 4 HOH B 45 322 322 HOH HOH . M 4 HOH B 46 323 323 HOH HOH . M 4 HOH B 47 324 324 HOH HOH . M 4 HOH B 48 325 71 HOH HOH . M 4 HOH B 49 326 326 HOH HOH . M 4 HOH B 50 327 327 HOH HOH . M 4 HOH B 51 328 328 HOH HOH . M 4 HOH B 52 329 329 HOH HOH . M 4 HOH B 53 330 330 HOH HOH . M 4 HOH B 54 331 331 HOH HOH . M 4 HOH B 55 332 332 HOH HOH . M 4 HOH B 56 333 72 HOH HOH . M 4 HOH B 57 334 73 HOH HOH . M 4 HOH B 58 335 335 HOH HOH . M 4 HOH B 59 336 336 HOH HOH . M 4 HOH B 60 337 337 HOH HOH . M 4 HOH B 61 338 338 HOH HOH . M 4 HOH B 62 339 339 HOH HOH . M 4 HOH B 63 340 75 HOH HOH . M 4 HOH B 64 341 81 HOH HOH . M 4 HOH B 65 342 86 HOH HOH . M 4 HOH B 66 343 94 HOH HOH . M 4 HOH B 67 344 96 HOH HOH . M 4 HOH B 68 345 97 HOH HOH . M 4 HOH B 69 346 98 HOH HOH . M 4 HOH B 70 347 347 HOH HOH . M 4 HOH B 71 348 102 HOH HOH . M 4 HOH B 72 349 103 HOH HOH . M 4 HOH B 73 350 105 HOH HOH . M 4 HOH B 74 351 108 HOH HOH . M 4 HOH B 75 352 109 HOH HOH . M 4 HOH B 76 353 353 HOH HOH . M 4 HOH B 77 354 354 HOH HOH . M 4 HOH B 78 355 355 HOH HOH . M 4 HOH B 79 356 356 HOH HOH . M 4 HOH B 80 357 357 HOH HOH . M 4 HOH B 81 358 358 HOH HOH . M 4 HOH B 82 359 359 HOH HOH . M 4 HOH B 83 360 360 HOH HOH . M 4 HOH B 84 361 113 HOH HOH . M 4 HOH B 85 362 114 HOH HOH . M 4 HOH B 86 363 119 HOH HOH . M 4 HOH B 87 364 120 HOH HOH . M 4 HOH B 88 365 125 HOH HOH . M 4 HOH B 89 366 127 HOH HOH . M 4 HOH B 90 367 131 HOH HOH . M 4 HOH B 91 368 134 HOH HOH . M 4 HOH B 92 369 135 HOH HOH . M 4 HOH B 93 370 137 HOH HOH . M 4 HOH B 94 371 138 HOH HOH . M 4 HOH B 95 372 139 HOH HOH . M 4 HOH B 96 373 140 HOH HOH . M 4 HOH B 97 374 141 HOH HOH . M 4 HOH B 98 375 142 HOH HOH . M 4 HOH B 99 376 144 HOH HOH . M 4 HOH B 100 377 145 HOH HOH . M 4 HOH B 101 378 148 HOH HOH . M 4 HOH B 102 379 149 HOH HOH . M 4 HOH B 103 380 150 HOH HOH . M 4 HOH B 104 381 152 HOH HOH . M 4 HOH B 105 382 153 HOH HOH . M 4 HOH B 106 383 155 HOH HOH . M 4 HOH B 107 384 160 HOH HOH . M 4 HOH B 108 385 161 HOH HOH . M 4 HOH B 109 386 162 HOH HOH . M 4 HOH B 110 387 165 HOH HOH . M 4 HOH B 111 388 168 HOH HOH . M 4 HOH B 112 389 169 HOH HOH . M 4 HOH B 113 390 170 HOH HOH . M 4 HOH B 114 391 171 HOH HOH . M 4 HOH B 115 392 173 HOH HOH . M 4 HOH B 116 393 174 HOH HOH . M 4 HOH B 117 394 176 HOH HOH . M 4 HOH B 118 395 178 HOH HOH . M 4 HOH B 119 396 183 HOH HOH . M 4 HOH B 120 397 184 HOH HOH . M 4 HOH B 121 398 186 HOH HOH . M 4 HOH B 122 399 187 HOH HOH . M 4 HOH B 123 403 188 HOH HOH . M 4 HOH B 124 404 190 HOH HOH . M 4 HOH B 125 405 191 HOH HOH . M 4 HOH B 126 406 192 HOH HOH . M 4 HOH B 127 407 195 HOH HOH . M 4 HOH B 128 408 196 HOH HOH . M 4 HOH B 129 409 197 HOH HOH . M 4 HOH B 130 410 198 HOH HOH . M 4 HOH B 131 411 201 HOH HOH . M 4 HOH B 132 412 202 HOH HOH . M 4 HOH B 133 413 203 HOH HOH . M 4 HOH B 134 414 206 HOH HOH . M 4 HOH B 135 415 210 HOH HOH . M 4 HOH B 136 416 211 HOH HOH . M 4 HOH B 137 417 214 HOH HOH . M 4 HOH B 138 418 215 HOH HOH . M 4 HOH B 139 419 217 HOH HOH . M 4 HOH B 140 420 220 HOH HOH . M 4 HOH B 141 421 221 HOH HOH . M 4 HOH B 142 422 222 HOH HOH . M 4 HOH B 143 423 226 HOH HOH . M 4 HOH B 144 424 230 HOH HOH . M 4 HOH B 145 425 231 HOH HOH . M 4 HOH B 146 426 235 HOH HOH . M 4 HOH B 147 427 237 HOH HOH . M 4 HOH B 148 428 240 HOH HOH . M 4 HOH B 149 429 242 HOH HOH . M 4 HOH B 150 430 243 HOH HOH . M 4 HOH B 151 431 249 HOH HOH . M 4 HOH B 152 432 253 HOH HOH . M 4 HOH B 153 433 255 HOH HOH . M 4 HOH B 154 434 259 HOH HOH . M 4 HOH B 155 435 260 HOH HOH . M 4 HOH B 156 436 261 HOH HOH . M 4 HOH B 157 437 264 HOH HOH . M 4 HOH B 158 438 268 HOH HOH . M 4 HOH B 159 439 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 2 29.724 -15.379 82.958 1 31.69 ? C1 EDO 402 B 1 HETATM 2 O O1 EDO . . . I 2 28.99 -14.81 84.042 1 35.02 ? O1 EDO 402 B 1 HETATM 3 C C2 EDO . . . I 2 29.486 -14.548 81.7 1 31.18 ? C2 EDO 402 B 1 HETATM 4 O O2 EDO . . . I 2 28.303 -14.994 81.002 1 30.54 ? O2 EDO 402 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #