data_3K2F
#
_model_server_result.job_id            fQrbGC6gC-HCOKqIkXVJwQ 
_model_server_result.datetime_utc      '2024-11-22 19:10:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":264}' 
#
_entry.id    3K2F 
#
_exptl.entry_id    3K2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              532.523 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-bis(nitrooxy)propyl ethyl[(4S,6S)-6-methyl-7,7-dioxido-2-sulfamoyl-5,6-dihydro-4H-thieno[2,3-b]thiopyran-4-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.4 
_cell.angle_gamma         90 
_cell.entry_id            3K2F 
_cell.length_a            41.63 
_cell.length_b            42.01 
_cell.length_c            71.46 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc4 B ZN ZN . A ZN 262 1_555 D NAJ NKX . A NKX 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
#
_chem_comp.formula           'C14 H20 N4 O12 S3' 
_chem_comp.formula_weight    532.523 
_chem_comp.id                NKX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-bis(nitrooxy)propyl ethyl[(4S,6S)-6-methyl-7,7-dioxido-2-sulfamoyl-5,6-dihydro-4H-thieno[2,3-b]thiopyran-4-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAD NKX sing 237 n n 
OAB SAE NKX doub 238 n n 
OAC SAI NKX doub 239 n n 
CAD SAE NKX sing 240 n n 
CAD CAM NKX sing 241 n n 
SAE CAF NKX sing 242 n n 
SAE OAK NKX doub 243 n n 
CAF SAG NKX sing 244 n y 
CAF CAO NKX doub 245 n y 
SAG CAH NKX sing 246 n y 
CAH SAI NKX sing 247 n n 
CAH CAP NKX doub 248 n y 
SAI NAJ NKX sing 249 n n 
SAI OAL NKX doub 250 n n 
CAM CAN NKX sing 251 n n 
CAN CAO NKX sing 252 n n 
CAN NAQ NKX sing 253 n n 
CAO CAP NKX sing 254 n y 
NAQ CAR NKX sing 255 n n 
NAQ CAU NKX sing 256 n n 
CAR CAS NKX sing 257 n n 
OAT CAU NKX doub 258 n n 
CAU OAV NKX sing 259 n n 
OAV CAW NKX sing 260 n n 
CAW CAY NKX sing 261 n n 
OAX NBA NKX doub 262 n n 
CAY OAZ NKX sing 263 n n 
CAY CBC NKX sing 264 n n 
OAZ NBA NKX sing 265 n n 
NBA OBB NKX sing 266 n n 
CBC OBD NKX sing 267 n n 
OBD NBE NKX sing 268 n n 
NBE OBF NKX sing 269 n n 
NBE OBG NKX doub 270 n n 
CAA HAA NKX sing 271 n n 
CAA HAAA NKX sing 272 n n 
CAA HAAB NKX sing 273 n n 
CAD HAD NKX sing 274 n n 
NAJ HNAJ NKX sing 275 n n 
NAJ HNAA NKX sing 276 n n 
CAM HAM NKX sing 277 n n 
CAM HAMA NKX sing 278 n n 
CAN HAN NKX sing 279 n n 
CAP HAP NKX sing 280 n n 
CAR HAR NKX sing 281 n n 
CAR HARA NKX sing 282 n n 
CAS HAS NKX sing 283 n n 
CAS HASA NKX sing 284 n n 
CAS HASB NKX sing 285 n n 
CAW HAW NKX sing 286 n n 
CAW HAWA NKX sing 287 n n 
CAY HAY NKX sing 288 n n 
CBC HBC NKX sing 289 n n 
CBC HBCA NKX sing 290 n n 
#
_atom_sites.entry_id                     3K2F 
_atom_sites.fract_transf_matrix[1][1]    0.024021 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006168 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014448 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 262 262 ZN ZN . 
C 3 HG A 1 263 263 HG HG . 
D 4 NKX A 1 264 1 NKX NCX . 
E 5 HOH A 1 126 126 HOH HOH . 
E 5 HOH A 2 265 3 HOH HOH . 
E 5 HOH A 3 266 4 HOH HOH . 
E 5 HOH A 4 267 6 HOH HOH . 
E 5 HOH A 5 268 7 HOH HOH . 
E 5 HOH A 6 269 8 HOH HOH . 
E 5 HOH A 7 270 9 HOH HOH . 
E 5 HOH A 8 271 10 HOH HOH . 
E 5 HOH A 9 272 12 HOH HOH . 
E 5 HOH A 10 273 13 HOH HOH . 
E 5 HOH A 11 274 14 HOH HOH . 
E 5 HOH A 12 275 15 HOH HOH . 
E 5 HOH A 13 276 16 HOH HOH . 
E 5 HOH A 14 277 17 HOH HOH . 
E 5 HOH A 15 278 18 HOH HOH . 
E 5 HOH A 16 279 19 HOH HOH . 
E 5 HOH A 17 280 20 HOH HOH . 
E 5 HOH A 18 281 23 HOH HOH . 
E 5 HOH A 19 282 24 HOH HOH . 
E 5 HOH A 20 283 25 HOH HOH . 
E 5 HOH A 21 284 26 HOH HOH . 
E 5 HOH A 22 285 27 HOH HOH . 
E 5 HOH A 23 286 28 HOH HOH . 
E 5 HOH A 24 287 29 HOH HOH . 
E 5 HOH A 25 288 30 HOH HOH . 
E 5 HOH A 26 289 31 HOH HOH . 
E 5 HOH A 27 290 32 HOH HOH . 
E 5 HOH A 28 291 33 HOH HOH . 
E 5 HOH A 29 292 34 HOH HOH . 
E 5 HOH A 30 293 35 HOH HOH . 
E 5 HOH A 31 294 36 HOH HOH . 
E 5 HOH A 32 295 37 HOH HOH . 
E 5 HOH A 33 296 38 HOH HOH . 
E 5 HOH A 34 297 39 HOH HOH . 
E 5 HOH A 35 298 40 HOH HOH . 
E 5 HOH A 36 299 41 HOH HOH . 
E 5 HOH A 37 300 42 HOH HOH . 
E 5 HOH A 38 301 43 HOH HOH . 
E 5 HOH A 39 302 44 HOH HOH . 
E 5 HOH A 40 303 45 HOH HOH . 
E 5 HOH A 41 304 46 HOH HOH . 
E 5 HOH A 42 305 47 HOH HOH . 
E 5 HOH A 43 306 48 HOH HOH . 
E 5 HOH A 44 307 49 HOH HOH . 
E 5 HOH A 45 308 50 HOH HOH . 
E 5 HOH A 46 309 51 HOH HOH . 
E 5 HOH A 47 310 52 HOH HOH . 
E 5 HOH A 48 311 53 HOH HOH . 
E 5 HOH A 49 312 54 HOH HOH . 
E 5 HOH A 50 313 55 HOH HOH . 
E 5 HOH A 51 314 56 HOH HOH . 
E 5 HOH A 52 315 57 HOH HOH . 
E 5 HOH A 53 316 58 HOH HOH . 
E 5 HOH A 54 317 60 HOH HOH . 
E 5 HOH A 55 318 61 HOH HOH . 
E 5 HOH A 56 319 62 HOH HOH . 
E 5 HOH A 57 320 63 HOH HOH . 
E 5 HOH A 58 321 64 HOH HOH . 
E 5 HOH A 59 322 65 HOH HOH . 
E 5 HOH A 60 323 66 HOH HOH . 
E 5 HOH A 61 324 67 HOH HOH . 
E 5 HOH A 62 325 69 HOH HOH . 
E 5 HOH A 63 326 71 HOH HOH . 
E 5 HOH A 64 327 73 HOH HOH . 
E 5 HOH A 65 328 74 HOH HOH . 
E 5 HOH A 66 329 75 HOH HOH . 
E 5 HOH A 67 330 76 HOH HOH . 
E 5 HOH A 68 331 77 HOH HOH . 
E 5 HOH A 69 332 78 HOH HOH . 
E 5 HOH A 70 333 79 HOH HOH . 
E 5 HOH A 71 334 80 HOH HOH . 
E 5 HOH A 72 335 81 HOH HOH . 
E 5 HOH A 73 336 82 HOH HOH . 
E 5 HOH A 74 337 83 HOH HOH . 
E 5 HOH A 75 338 84 HOH HOH . 
E 5 HOH A 76 339 85 HOH HOH . 
E 5 HOH A 77 340 86 HOH HOH . 
E 5 HOH A 78 341 87 HOH HOH . 
E 5 HOH A 79 342 89 HOH HOH . 
E 5 HOH A 80 343 90 HOH HOH . 
E 5 HOH A 81 344 91 HOH HOH . 
E 5 HOH A 82 345 92 HOH HOH . 
E 5 HOH A 83 346 93 HOH HOH . 
E 5 HOH A 84 347 95 HOH HOH . 
E 5 HOH A 85 348 96 HOH HOH . 
E 5 HOH A 86 349 97 HOH HOH . 
E 5 HOH A 87 350 98 HOH HOH . 
E 5 HOH A 88 351 99 HOH HOH . 
E 5 HOH A 89 352 100 HOH HOH . 
E 5 HOH A 90 353 101 HOH HOH . 
E 5 HOH A 91 354 102 HOH HOH . 
E 5 HOH A 92 355 103 HOH HOH . 
E 5 HOH A 93 356 104 HOH HOH . 
E 5 HOH A 94 357 105 HOH HOH . 
E 5 HOH A 95 358 106 HOH HOH . 
E 5 HOH A 96 359 107 HOH HOH . 
E 5 HOH A 97 360 108 HOH HOH . 
E 5 HOH A 98 361 109 HOH HOH . 
E 5 HOH A 99 362 110 HOH HOH . 
E 5 HOH A 100 363 111 HOH HOH . 
E 5 HOH A 101 364 112 HOH HOH . 
E 5 HOH A 102 365 113 HOH HOH . 
E 5 HOH A 103 366 114 HOH HOH . 
E 5 HOH A 104 367 115 HOH HOH . 
E 5 HOH A 105 368 116 HOH HOH . 
E 5 HOH A 106 369 117 HOH HOH . 
E 5 HOH A 107 370 118 HOH HOH . 
E 5 HOH A 108 371 120 HOH HOH . 
E 5 HOH A 109 372 121 HOH HOH . 
E 5 HOH A 110 373 122 HOH HOH . 
E 5 HOH A 111 374 123 HOH HOH . 
E 5 HOH A 112 375 124 HOH HOH . 
E 5 HOH A 113 376 125 HOH HOH . 
E 5 HOH A 114 377 127 HOH HOH . 
E 5 HOH A 115 378 128 HOH HOH . 
E 5 HOH A 116 379 129 HOH HOH . 
E 5 HOH A 117 380 133 HOH HOH . 
E 5 HOH A 118 381 134 HOH HOH . 
E 5 HOH A 119 382 139 HOH HOH . 
E 5 HOH A 120 383 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA NKX . . . D 4 -3.236 6.789 14.194 1 21.01 ? CAA NKX 264 A 1 
HETATM 2 O OAB NKX . . . D 4 -7.017 5.959 12.924 1 22.68 ? OAB NKX 264 A 1 
HETATM 3 O OAC NKX . . . D 4 -5.288 1.035 18.101 1 16.99 ? OAC NKX 264 A 1 
HETATM 4 C CAD NKX . . . D 4 -4.297 6.47 13.143 1 22.18 ? CAD NKX 264 A 1 
HETATM 5 S SAE NKX . . . D 4 -5.884 5.975 13.9 1 21.73 ? SAE NKX 264 A 1 
HETATM 6 C CAF NKX . . . D 4 -5.596 4.361 14.519 1 19.72 ? CAF NKX 264 A 1 
HETATM 7 S SAG NKX . . . D 4 -6.461 3.558 15.696 1 16.58 ? SAG NKX 264 A 1 
HETATM 8 C CAH NKX . . . D 4 -5.553 2.209 15.693 1 18.8 ? CAH NKX 264 A 1 
HETATM 9 S SAI NKX . . . D 4 -5.931 0.871 16.756 1 17.26 ? SAI NKX 264 A 1 
HETATM 10 N NAJ NKX . . . D 4 -5.432 -0.387 16.089 1 18.55 ? NAJ NKX 264 A 1 
HETATM 11 O OAK NKX . . . D 4 -6.225 6.912 15.027 1 23.75 ? OAK NKX 264 A 1 
HETATM 12 O OAL NKX . . . D 4 -7.507 0.835 16.929 1 14.67 ? OAL NKX 264 A 1 
HETATM 13 C CAM NKX . . . D 4 -3.846 5.311 12.252 1 23.11 ? CAM NKX 264 A 1 
HETATM 14 C CAN NKX . . . D 4 -3.504 3.979 13.006 1 20.88 ? CAN NKX 264 A 1 
HETATM 15 C CAO NKX . . . D 4 -4.545 3.516 14.099 1 19.33 ? CAO NKX 264 A 1 
HETATM 16 C CAP NKX . . . D 4 -4.57 2.338 14.784 1 19.65 ? CAP NKX 264 A 1 
HETATM 17 N NAQ NKX . . . D 4 -3.239 2.977 11.936 1 24.82 ? NAQ NKX 264 A 1 
HETATM 18 C CAR NKX . . . D 4 -4.377 2.142 11.493 1 23.08 ? CAR NKX 264 A 1 
HETATM 19 C CAS NKX . . . D 4 -5.172 2.892 10.44 1 27.1 ? CAS NKX 264 A 1 
HETATM 20 O OAT NKX . . . D 4 -1.043 3.534 11.706 1 27.45 ? OAT NKX 264 A 1 
HETATM 21 C CAU NKX . . . D 4 -2.019 2.861 11.374 1 27.62 ? CAU NKX 264 A 1 
HETATM 22 O OAV NKX . . . D 4 -1.819 1.96 10.376 1 32.74 ? OAV NKX 264 A 1 
HETATM 23 C CAW NKX . . . D 4 -0.559 2.199 9.604 1 39.92 ? CAW NKX 264 A 1 
HETATM 24 O OAX NKX . . . D 4 -0.481 4.557 6.647 1 44.63 ? OAX NKX 264 A 1 
HETATM 25 C CAY NKX . . . D 4 0.184 3.572 9.43 1 42.59 ? CAY NKX 264 A 1 
HETATM 26 O OAZ NKX . . . D 4 -0.716 4.664 9.072 1 43.67 ? OAZ NKX 264 A 1 
HETATM 27 N NBA NKX . . . D 4 -1.296 4.632 7.825 1 44.36 ? NBA NKX 264 A 1 
HETATM 28 O OBB NKX . . . D 4 -2.745 4.714 7.701 1 42.52 ? OBB NKX 264 A 1 
HETATM 29 C CBC NKX . . . D 4 1.4 3.491 8.466 1 43.72 ? CBC NKX 264 A 1 
HETATM 30 O OBD NKX . . . D 4 2.623 3.878 9.116 1 43.55 ? OBD NKX 264 A 1 
HETATM 31 N NBE NKX . . . D 4 3.618 3.968 8.193 1 44.24 ? NBE NKX 264 A 1 
HETATM 32 O OBF NKX . . . D 4 3.824 5.194 7.493 1 45.91 ? OBF NKX 264 A 1 
HETATM 33 O OBG NKX . . . D 4 4.463 2.845 7.917 1 45.05 ? OBG NKX 264 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           379 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#