data_3K2L # _model_server_result.job_id hL3gkLJvaRDTiefTsLjj2A _model_server_result.datetime_utc '2024-11-15 00:10:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":480}' # _entry.id 3K2L # _exptl.entry_id 3K2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K2L _cell.length_a 84.285 _cell.length_b 84.285 _cell.length_c 148.505 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 108 A GLY 158 1_555 A N SEP 109 A SEP 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 109 A SEP 159 1_555 A N PHE 110 A PHE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C TYR 257 A TYR 307 1_555 A N TPO 258 A TPO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C TPO 258 A TPO 308 1_555 A N PTR 259 A PTR 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C PTR 259 A PTR 309 1_555 A N ILE 260 A ILE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 A C PRO 318 A PRO 368 1_555 A N SEP 319 A SEP 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C SEP 319 A SEP 369 1_555 A N GLN 320 A GLN 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C SER 334 A SER 384 1_555 A N SEP 335 A SEP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 A C SEP 335 A SEP 385 1_555 A N LYS 336 A LYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A N GLN 235 A GLN 285 1_555 D NA NA . A NA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc2 A O GLN 235 A GLN 285 1_555 D NA NA . A NA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc3 A O ARG 238 A ARG 288 1_555 D NA NA . A NA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 A O GLY 240 A GLY 290 1_555 D NA NA . A NA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K2L _atom_sites.fract_transf_matrix[1][1] 0.011865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 3 NA A 1 480 1 NA NA . E 4 CL A 1 481 1 CL CL . F 4 CL A 1 482 2 CL CL . G 5 HOH A 1 3 3 HOH HOH . G 5 HOH A 2 4 4 HOH HOH . G 5 HOH A 3 5 5 HOH HOH . G 5 HOH A 4 7 7 HOH HOH . G 5 HOH A 5 8 8 HOH HOH . G 5 HOH A 6 9 9 HOH HOH . G 5 HOH A 7 10 10 HOH HOH . G 5 HOH A 8 11 11 HOH HOH . G 5 HOH A 9 12 12 HOH HOH . G 5 HOH A 10 13 13 HOH HOH . G 5 HOH A 11 14 14 HOH HOH . G 5 HOH A 12 15 15 HOH HOH . G 5 HOH A 13 16 16 HOH HOH . G 5 HOH A 14 17 17 HOH HOH . G 5 HOH A 15 18 18 HOH HOH . G 5 HOH A 16 19 19 HOH HOH . G 5 HOH A 17 20 20 HOH HOH . G 5 HOH A 18 21 21 HOH HOH . G 5 HOH A 19 22 22 HOH HOH . G 5 HOH A 20 23 23 HOH HOH . G 5 HOH A 21 24 24 HOH HOH . G 5 HOH A 22 25 25 HOH HOH . G 5 HOH A 23 26 26 HOH HOH . G 5 HOH A 24 27 27 HOH HOH . G 5 HOH A 25 28 28 HOH HOH . G 5 HOH A 26 29 29 HOH HOH . G 5 HOH A 27 30 30 HOH HOH . G 5 HOH A 28 31 31 HOH HOH . G 5 HOH A 29 32 32 HOH HOH . G 5 HOH A 30 33 33 HOH HOH . G 5 HOH A 31 34 34 HOH HOH . G 5 HOH A 32 35 35 HOH HOH . G 5 HOH A 33 36 36 HOH HOH . G 5 HOH A 34 37 37 HOH HOH . G 5 HOH A 35 39 39 HOH HOH . G 5 HOH A 36 40 40 HOH HOH . G 5 HOH A 37 41 41 HOH HOH . G 5 HOH A 38 42 42 HOH HOH . G 5 HOH A 39 43 43 HOH HOH . G 5 HOH A 40 44 44 HOH HOH . G 5 HOH A 41 45 45 HOH HOH . G 5 HOH A 42 46 46 HOH HOH . G 5 HOH A 43 47 47 HOH HOH . G 5 HOH A 44 48 48 HOH HOH . G 5 HOH A 45 49 49 HOH HOH . G 5 HOH A 46 483 1 HOH HOH . G 5 HOH A 47 484 2 HOH HOH . G 5 HOH A 48 485 50 HOH HOH . G 5 HOH A 49 486 51 HOH HOH . G 5 HOH A 50 487 53 HOH HOH . G 5 HOH A 51 488 54 HOH HOH . G 5 HOH A 52 489 55 HOH HOH . G 5 HOH A 53 490 56 HOH HOH . G 5 HOH A 54 491 57 HOH HOH . G 5 HOH A 55 492 58 HOH HOH . G 5 HOH A 56 493 59 HOH HOH . G 5 HOH A 57 494 60 HOH HOH . G 5 HOH A 58 495 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.308 _atom_site.Cartn_y 18.599 _atom_site.Cartn_z 30.863 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 480 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #