data_3K30 # _model_server_result.job_id dqAWVTH0RlN7mTse0XZpcA _model_server_result.datetime_utc '2024-11-22 14:59:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 3K30 # _exptl.entry_id 3K30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K30 _cell.length_a 101.141 _cell.length_b 107.035 _cell.length_c 153.352 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 348 A CYS 348 1_555 C FE4 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A SG CYS 351 A CYS 351 1_555 C FE3 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A SG CYS 354 A CYS 354 1_555 C FE1 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A SG CYS 366 A CYS 366 1_555 C FE2 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B SG CYS 348 B CYS 348 1_555 F FE4 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc6 B SG CYS 351 B CYS 351 1_555 F FE2 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc7 B SG CYS 354 B CYS 354 1_555 F FE3 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 B SG CYS 366 B CYS 366 1_555 F FE1 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 127 n n N1 C10 FMN doub 128 n n C2 O2 FMN doub 129 n n C2 N3 FMN sing 130 n n N3 C4 FMN sing 131 n n N3 HN3 FMN sing 132 n n C4 O4 FMN doub 133 n n C4 C4A FMN sing 134 n n C4A N5 FMN doub 135 n n C4A C10 FMN sing 136 n n N5 C5A FMN sing 137 n n C5A C6 FMN doub 138 n y C5A C9A FMN sing 139 n y C6 C7 FMN sing 140 n y C6 H6 FMN sing 141 n n C7 C7M FMN sing 142 n n C7 C8 FMN doub 143 n y C7M HM71 FMN sing 144 n n C7M HM72 FMN sing 145 n n C7M HM73 FMN sing 146 n n C8 C8M FMN sing 147 n n C8 C9 FMN sing 148 n y C8M HM81 FMN sing 149 n n C8M HM82 FMN sing 150 n n C8M HM83 FMN sing 151 n n C9 C9A FMN doub 152 n y C9 H9 FMN sing 153 n n C9A N10 FMN sing 154 n n N10 C10 FMN sing 155 n n N10 C1' FMN sing 156 n n C1' C2' FMN sing 157 n n C1' "H1'1" FMN sing 158 n n C1' "H1'2" FMN sing 159 n n C2' O2' FMN sing 160 n n C2' C3' FMN sing 161 n n C2' H2' FMN sing 162 n n O2' HO2' FMN sing 163 n n C3' O3' FMN sing 164 n n C3' C4' FMN sing 165 n n C3' H3' FMN sing 166 n n O3' HO3' FMN sing 167 n n C4' O4' FMN sing 168 n n C4' C5' FMN sing 169 n n C4' H4' FMN sing 170 n n O4' HO4' FMN sing 171 n n C5' O5' FMN sing 172 n n C5' "H5'1" FMN sing 173 n n C5' "H5'2" FMN sing 174 n n O5' P FMN sing 175 n n P O1P FMN doub 176 n n P O2P FMN sing 177 n n P O3P FMN sing 178 n n O2P HOP2 FMN sing 179 n n O3P HOP3 FMN sing 180 n n # _atom_sites.entry_id 3K30 _atom_sites.fract_transf_matrix[1][1] 0.009887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 801 801 SF4 SF4 . D 3 FMN A 1 802 802 FMN FMN . E 4 ADP A 1 803 803 ADP ADP . F 2 SF4 B 1 801 801 SF4 SF4 . G 3 FMN B 1 802 802 FMN FMN . H 4 ADP B 1 803 803 ADP ADP . I 5 HOH A 1 902 902 HOH HOH . I 5 HOH A 2 905 905 HOH HOH . J 5 HOH B 1 901 901 HOH HOH . J 5 HOH B 2 902 902 HOH HOH . J 5 HOH B 3 903 903 HOH HOH . J 5 HOH B 4 904 904 HOH HOH . J 5 HOH B 5 905 905 HOH HOH . J 5 HOH B 6 906 906 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 36.225 -3.184 13.011 1 22.7 ? N1 FMN 802 A 1 HETATM 2 C C2 FMN . . . D 3 35.061 -3.806 13.32 1 23.5 ? C2 FMN 802 A 1 HETATM 3 O O2 FMN . . . D 3 34.996 -5.061 13.321 1 22.75 ? O2 FMN 802 A 1 HETATM 4 N N3 FMN . . . D 3 33.923 -3.075 13.265 1 23.05 ? N3 FMN 802 A 1 HETATM 5 C C4 FMN . . . D 3 33.968 -1.751 13.507 1 22.47 ? C4 FMN 802 A 1 HETATM 6 O O4 FMN . . . D 3 32.871 -1.175 13.651 1 20.64 ? O4 FMN 802 A 1 HETATM 7 C C4A FMN . . . D 3 35.219 -1.094 13.498 1 22.83 ? C4A FMN 802 A 1 HETATM 8 N N5 FMN . . . D 3 35.356 0.265 13.506 1 22.97 ? N5 FMN 802 A 1 HETATM 9 C C5A FMN . . . D 3 36.408 0.908 12.928 1 21.64 ? C5A FMN 802 A 1 HETATM 10 C C6 FMN . . . D 3 36.43 2.314 12.853 1 22 ? C6 FMN 802 A 1 HETATM 11 C C7 FMN . . . D 3 37.529 3.053 12.383 1 21.83 ? C7 FMN 802 A 1 HETATM 12 C C7M FMN . . . D 3 37.32 4.514 12.023 1 18.67 ? C7M FMN 802 A 1 HETATM 13 C C8 FMN . . . D 3 38.625 2.298 11.942 1 21.83 ? C8 FMN 802 A 1 HETATM 14 C C8M FMN . . . D 3 39.786 2.923 11.218 1 18.68 ? C8M FMN 802 A 1 HETATM 15 C C9 FMN . . . D 3 38.741 0.977 12.432 1 23.48 ? C9 FMN 802 A 1 HETATM 16 C C9A FMN . . . D 3 37.621 0.245 12.878 1 22.35 ? C9A FMN 802 A 1 HETATM 17 N N10 FMN . . . D 3 37.579 -1.181 12.944 1 22.4 ? N10 FMN 802 A 1 HETATM 18 C C10 FMN . . . D 3 36.324 -1.834 13.086 1 22.18 ? C10 FMN 802 A 1 HETATM 19 C C1' FMN . . . D 3 38.773 -1.999 12.674 1 21.01 ? C1' FMN 802 A 1 HETATM 20 C C2' FMN . . . D 3 38.886 -2.208 11.161 1 18.66 ? C2' FMN 802 A 1 HETATM 21 O O2' FMN . . . D 3 37.837 -3.055 10.671 1 19.86 ? O2' FMN 802 A 1 HETATM 22 C C3' FMN . . . D 3 40.228 -2.788 10.76 1 17.07 ? C3' FMN 802 A 1 HETATM 23 O O3' FMN . . . D 3 40.285 -4.142 11.201 1 16.51 ? O3' FMN 802 A 1 HETATM 24 C C4' FMN . . . D 3 41.386 -1.964 11.344 1 16.55 ? C4' FMN 802 A 1 HETATM 25 O O4' FMN . . . D 3 41.111 -0.547 11.207 1 12.6 ? O4' FMN 802 A 1 HETATM 26 C C5' FMN . . . D 3 42.74 -2.409 10.761 1 13.34 ? C5' FMN 802 A 1 HETATM 27 O O5' FMN . . . D 3 42.73 -2.385 9.339 1 12.82 ? O5' FMN 802 A 1 HETATM 28 P P FMN . . . D 3 43.399 -1.126 8.563 1 16.75 ? P FMN 802 A 1 HETATM 29 O O1P FMN . . . D 3 44.907 -1.154 8.744 1 13.2 ? O1P FMN 802 A 1 HETATM 30 O O2P FMN . . . D 3 42.779 0.109 9.22 1 16.57 ? O2P FMN 802 A 1 HETATM 31 O O3P FMN . . . D 3 42.976 -1.378 7.145 1 14.16 ? O3P FMN 802 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #