data_3K3E # _model_server_result.job_id RURyInl_UdiECQ8MGm9DJA _model_server_result.datetime_utc '2024-11-25 20:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 3K3E # _exptl.entry_id 3K3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.73 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-chlorophenyl)-6-[(2R)-3,3,3-trifluoro-2-methylpropyl]-1,7-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K3E _cell.length_a 103.19 _cell.length_b 103.19 _cell.length_c 270.849 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 61 B CYS 241 1_555 B SG CYS 158 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A NE2 HIS 76 A HIS 256 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A NE2 HIS 112 A HIS 292 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 A OD2 ASP 113 A ASP 293 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A OD1 ASP 113 A ASP 293 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc5 A OD1 ASP 222 A ASP 402 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 C ZN ZN . A ZN 601 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc7 D MG MG . A MG 602 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 D MG MG . A MG 602 1_555 I O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc9 D MG MG . A MG 602 1_555 I O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc10 D MG MG . A MG 602 1_555 I O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc11 D MG MG . A MG 602 1_555 I O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 B NE2 HIS 76 B HIS 256 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc13 B NE2 HIS 112 B HIS 292 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc14 B OD2 ASP 113 B ASP 293 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc15 B OD1 ASP 113 B ASP 293 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc16 B OD1 ASP 222 B ASP 402 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc17 G MG MG . B MG 602 1_555 J O HOH . B HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc18 G MG MG . B MG 602 1_555 J O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc19 G MG MG . B MG 602 1_555 J O HOH . B HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc20 G MG MG . B MG 602 1_555 J O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? # _chem_comp.formula 'C15 H12 Cl F3 N4 O' _chem_comp.formula_weight 356.73 _chem_comp.id PDB _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-chlorophenyl)-6-[(2R)-3,3,3-trifluoro-2-methylpropyl]-1,7-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 PDB doub 237 n y C4 C5 PDB sing 238 n y C3 C2 PDB sing 239 n y C5 C6 PDB doub 240 n y C20 C19 PDB sing 241 n n C2 CL1 PDB sing 242 n n C2 C7 PDB doub 243 n y C6 C7 PDB sing 244 n y C7 N8 PDB sing 245 n n C19 C18 PDB sing 246 n n C19 C21 PDB sing 247 n n C18 C14 PDB sing 248 n n F7 C21 PDB sing 249 n n N13 C14 PDB sing 250 n n N13 C11 PDB sing 251 n n C21 F6 PDB sing 252 n n C21 F5 PDB sing 253 n n N8 C11 PDB sing 254 n y N8 N9 PDB sing 255 n y C14 N15 PDB doub 256 n n C11 C12 PDB doub 257 n y N9 C10 PDB doub 258 n y N15 C16 PDB sing 259 n n C12 C10 PDB sing 260 n y C12 C16 PDB sing 261 n n C16 O17 PDB doub 262 n n C3 H1 PDB sing 263 n n C4 H2 PDB sing 264 n n C5 H3 PDB sing 265 n n C6 H4 PDB sing 266 n n C10 H5 PDB sing 267 n n N13 H6 PDB sing 268 n n C18 H7 PDB sing 269 n n C18 H8 PDB sing 270 n n C19 H9 PDB sing 271 n n C20 H10 PDB sing 272 n n C20 H11 PDB sing 273 n n C20 H12 PDB sing 274 n n # _atom_sites.entry_id 3K3E _atom_sites.fract_transf_matrix[1][1] 0.009691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 101 ZN ZN . D 3 MG A 1 602 102 MG MG . E 4 PDB A 1 600 600 PDB PDB . F 2 ZN B 1 601 101 ZN ZN . G 3 MG B 1 602 102 MG MG . H 4 PDB B 1 600 600 PDB PDB . I 5 HOH A 1 701 1 HOH TIP . I 5 HOH A 2 702 2 HOH TIP . I 5 HOH A 3 703 3 HOH TIP . I 5 HOH A 4 704 4 HOH TIP . I 5 HOH A 5 705 5 HOH TIP . I 5 HOH A 6 706 6 HOH TIP . I 5 HOH A 7 707 7 HOH TIP . I 5 HOH A 8 708 8 HOH TIP . I 5 HOH A 9 709 9 HOH TIP . I 5 HOH A 10 710 10 HOH TIP . J 5 HOH B 1 711 11 HOH TIP . J 5 HOH B 2 712 12 HOH TIP . J 5 HOH B 3 713 13 HOH TIP . J 5 HOH B 4 714 14 HOH TIP . J 5 HOH B 5 715 15 HOH TIP . J 5 HOH B 6 716 16 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PDB . . . E 4 78.37 49.971 39.629 1 45.32 ? C2 PDB 600 A 1 HETATM 2 C C3 PDB . . . E 4 78.988 49.885 38.387 1 41.5 ? C3 PDB 600 A 1 HETATM 3 C C4 PDB . . . E 4 80.239 50.461 38.191 1 41.39 ? C4 PDB 600 A 1 HETATM 4 C C5 PDB . . . E 4 80.869 51.125 39.237 1 43.23 ? C5 PDB 600 A 1 HETATM 5 F F5 PDB . . . E 4 75.425 55.156 42.986 1 49.67 ? F5 PDB 600 A 1 HETATM 6 C C6 PDB . . . E 4 80.249 51.211 40.479 1 43.57 ? C6 PDB 600 A 1 HETATM 7 F F6 PDB . . . E 4 73.932 56.357 41.89 1 51.85 ? F6 PDB 600 A 1 HETATM 8 C C7 PDB . . . E 4 79.001 50.632 40.678 1 44.37 ? C7 PDB 600 A 1 HETATM 9 F F7 PDB . . . E 4 76.101 56.599 41.446 1 50.79 ? F7 PDB 600 A 1 HETATM 10 N N8 PDB . . . E 4 78.432 50.68 41.901 1 45.5 ? N8 PDB 600 A 1 HETATM 11 N N9 PDB . . . E 4 78.909 50.145 42.93 1 44.88 ? N9 PDB 600 A 1 HETATM 12 C C10 PDB . . . E 4 78.132 50.376 44.01 1 45.05 ? C10 PDB 600 A 1 HETATM 13 C C11 PDB . . . E 4 77.281 51.319 42.204 1 47.47 ? C11 PDB 600 A 1 HETATM 14 C C12 PDB . . . E 4 77.062 51.142 43.564 1 47.97 ? C12 PDB 600 A 1 HETATM 15 N N13 PDB . . . E 4 76.385 52.032 41.469 1 48.71 ? N13 PDB 600 A 1 HETATM 16 C C14 PDB . . . E 4 75.278 52.569 42.051 1 48.86 ? C14 PDB 600 A 1 HETATM 17 N N15 PDB . . . E 4 75.046 52.406 43.382 1 47.74 ? N15 PDB 600 A 1 HETATM 18 C C16 PDB . . . E 4 75.936 51.694 44.158 1 47.49 ? C16 PDB 600 A 1 HETATM 19 O O17 PDB . . . E 4 75.735 51.571 45.367 1 49.1 ? O17 PDB 600 A 1 HETATM 20 C C18 PDB . . . E 4 74.306 53.395 41.223 1 49.06 ? C18 PDB 600 A 1 HETATM 21 C C19 PDB . . . E 4 75.036 54.634 40.699 1 51.71 ? C19 PDB 600 A 1 HETATM 22 C C20 PDB . . . E 4 74.31 55.179 39.467 1 49.8 ? C20 PDB 600 A 1 HETATM 23 C C21 PDB . . . E 4 75.125 55.714 41.783 1 51.72 ? C21 PDB 600 A 1 HETATM 24 CL CL1 PDB . . . E 4 76.821 49.257 39.859 1 53.44 ? CL1 PDB 600 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #