data_3K3H # _model_server_result.job_id EICcVBDcTw727J-abdPUlg _model_server_result.datetime_utc '2024-12-01 17:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 3K3H # _exptl.entry_id 3K3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.73 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-chlorophenyl)-6-[(2S)-3,3,3-trifluoro-2-methylpropyl]-1,7-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K3H _cell.length_a 103.272 _cell.length_b 103.272 _cell.length_c 271.098 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 61 A CYS 241 1_555 A SG CYS 158 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 61 B CYS 241 1_555 B SG CYS 158 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 76 A HIS 256 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A NE2 HIS 112 A HIS 292 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 A OD2 ASP 113 A ASP 293 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A OD1 ASP 113 A ASP 293 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc5 A OD1 ASP 222 A ASP 402 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 C ZN ZN . A ZN 601 1_555 I O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 C ZN ZN . A ZN 601 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc8 D MG MG . A MG 602 1_555 I O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 D MG MG . A MG 602 1_555 I O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 D MG MG . A MG 602 1_555 I O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 D MG MG . A MG 602 1_555 I O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc12 D MG MG . A MG 602 1_555 I O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc13 B NE2 HIS 76 B HIS 256 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc14 B NE2 HIS 112 B HIS 292 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc15 B OD2 ASP 113 B ASP 293 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc16 B OD1 ASP 113 B ASP 293 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 B OD1 ASP 222 B ASP 402 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc18 F ZN ZN . B ZN 601 1_555 J O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc19 F ZN ZN . B ZN 601 1_555 J O HOH . B HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc20 G MG MG . B MG 602 1_555 J O HOH . B HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc21 G MG MG . B MG 602 1_555 J O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc22 G MG MG . B MG 602 1_555 J O HOH . B HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc23 G MG MG . B MG 602 1_555 J O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc24 G MG MG . B MG 602 1_555 J O HOH . B HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C15 H12 Cl F3 N4 O' _chem_comp.formula_weight 356.73 _chem_comp.id BYE _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-chlorophenyl)-6-[(2S)-3,3,3-trifluoro-2-methylpropyl]-1,7-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 BYE doub 70 n y C4 C5 BYE sing 71 n y F6 C21 BYE sing 72 n n C3 C2 BYE sing 73 n y F7 C21 BYE sing 74 n n C5 C6 BYE doub 75 n y C21 F5 BYE sing 76 n n C21 C19 BYE sing 77 n n C2 CL1 BYE sing 78 n n C2 C7 BYE doub 79 n y C6 C7 BYE sing 80 n y C19 C18 BYE sing 81 n n C19 C20 BYE sing 82 n n C7 N8 BYE sing 83 n n C18 C14 BYE sing 84 n n N13 C14 BYE sing 85 n n N13 C11 BYE sing 86 n n C14 N15 BYE doub 87 n n N8 C11 BYE sing 88 n y N8 N9 BYE sing 89 n y C11 C12 BYE doub 90 n y N9 C10 BYE doub 91 n y N15 C16 BYE sing 92 n n C12 C10 BYE sing 93 n y C12 C16 BYE sing 94 n n C16 O17 BYE doub 95 n n C3 H1 BYE sing 96 n n C4 H2 BYE sing 97 n n C5 H3 BYE sing 98 n n C6 H4 BYE sing 99 n n C10 H5 BYE sing 100 n n N13 H6 BYE sing 101 n n C18 H7 BYE sing 102 n n C18 H8 BYE sing 103 n n C19 H9 BYE sing 104 n n C20 H10 BYE sing 105 n n C20 H11 BYE sing 106 n n C20 H12 BYE sing 107 n n # _atom_sites.entry_id 3K3H _atom_sites.fract_transf_matrix[1][1] 0.009683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 101 ZN ZN . D 3 MG A 1 602 102 MG MG . E 4 BYE A 1 600 600 BYE BYE . F 2 ZN B 1 601 101 ZN ZN . G 3 MG B 1 602 102 MG MG . H 4 BYE B 1 600 600 BYE BYE . I 5 HOH A 1 701 1 HOH TIP . I 5 HOH A 2 702 2 HOH TIP . I 5 HOH A 3 703 3 HOH TIP . I 5 HOH A 4 704 4 HOH TIP . I 5 HOH A 5 705 5 HOH TIP . I 5 HOH A 6 706 6 HOH TIP . I 5 HOH A 7 707 7 HOH TIP . I 5 HOH A 8 708 8 HOH TIP . I 5 HOH A 9 709 9 HOH TIP . I 5 HOH A 10 710 10 HOH TIP . J 5 HOH B 1 711 11 HOH TIP . J 5 HOH B 2 712 12 HOH TIP . J 5 HOH B 3 713 13 HOH TIP . J 5 HOH B 4 714 14 HOH TIP . J 5 HOH B 5 715 15 HOH TIP . J 5 HOH B 6 716 16 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BYE . . . E 4 78.088 50.011 40.022 1 36.21 ? C2 BYE 600 A 1 HETATM 2 C C3 BYE . . . E 4 78.728 49.915 38.79 1 33.27 ? C3 BYE 600 A 1 HETATM 3 C C4 BYE . . . E 4 80.009 50.432 38.623 1 30.56 ? C4 BYE 600 A 1 HETATM 4 C C5 BYE . . . E 4 80.646 51.048 39.693 1 32.9 ? C5 BYE 600 A 1 HETATM 5 F F5 BYE . . . E 4 72.473 55.506 40.265 1 56.27 ? F5 BYE 600 A 1 HETATM 6 C C6 BYE . . . E 4 80.004 51.147 40.924 1 32.29 ? C6 BYE 600 A 1 HETATM 7 F F6 BYE . . . E 4 73.769 54.542 38.743 1 54.5 ? F6 BYE 600 A 1 HETATM 8 C C7 BYE . . . E 4 78.725 50.63 41.091 1 34.69 ? C7 BYE 600 A 1 HETATM 9 F F7 BYE . . . E 4 74.286 56.555 39.519 1 57.16 ? F7 BYE 600 A 1 HETATM 10 N N8 BYE . . . E 4 78.13 50.757 42.301 1 37.47 ? N8 BYE 600 A 1 HETATM 11 N N9 BYE . . . E 4 78.629 50.375 43.382 1 38.96 ? N9 BYE 600 A 1 HETATM 12 C C10 BYE . . . E 4 77.865 50.735 44.438 1 35.43 ? C10 BYE 600 A 1 HETATM 13 C C11 BYE . . . E 4 76.967 51.402 42.538 1 39.51 ? C11 BYE 600 A 1 HETATM 14 C C12 BYE . . . E 4 76.775 51.413 43.912 1 38.89 ? C12 BYE 600 A 1 HETATM 15 N N13 BYE . . . E 4 76.056 52.007 41.73 1 43.44 ? N13 BYE 600 A 1 HETATM 16 C C14 BYE . . . E 4 74.965 52.627 42.256 1 43.64 ? C14 BYE 600 A 1 HETATM 17 N N15 BYE . . . E 4 74.76 52.649 43.6 1 39.13 ? N15 BYE 600 A 1 HETATM 18 C C16 BYE . . . E 4 75.662 52.046 44.452 1 39.52 ? C16 BYE 600 A 1 HETATM 19 O O17 BYE . . . E 4 75.486 52.092 45.668 1 38.09 ? O17 BYE 600 A 1 HETATM 20 C C18 BYE . . . E 4 73.996 53.353 41.337 1 47.02 ? C18 BYE 600 A 1 HETATM 21 C C19 BYE . . . E 4 74.588 54.714 40.96 1 51.63 ? C19 BYE 600 A 1 HETATM 22 C C20 BYE . . . E 4 74.587 55.641 42.177 1 47.09 ? C20 BYE 600 A 1 HETATM 23 C C21 BYE . . . E 4 73.755 55.344 39.841 1 53.36 ? C21 BYE 600 A 1 HETATM 24 CL CL1 BYE . . . E 4 76.521 49.321 40.2 1 41.86 ? CL1 BYE 600 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #