data_3K3L # _model_server_result.job_id DE6sezUS6a8zwPKLKpI15A _model_server_result.datetime_utc '2025-01-10 08:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":179}' # _entry.id 3K3L # _exptl.entry_id 3K3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.457 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2,3-dihydroxyphenyl)carbonyl]-O-[(2S)-2-{[(2,3-dihydroxyphenyl)carbonyl]amino}-3-(L-seryloxy)propanoyl]-L-serine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K3L _cell.length_a 114.2 _cell.length_b 114.2 _cell.length_c 119.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,S 1 1 B,T 2 1 C,K,L,M,N,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OG1 THR 54 A THR 54 1_555 I NA NA . A NA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc2 A OH TYR 138 A TYR 138 1_555 I NA NA . A NA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc3 C OG1 THR 54 C THR 54 1_555 Q NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc4 C OH TYR 138 C TYR 138 1_555 Q NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? # _chem_comp.formula 'C23 H25 N3 O13' _chem_comp.formula_weight 551.457 _chem_comp.id MCK _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2,3-dihydroxyphenyl)carbonyl]-O-[(2S)-2-{[(2,3-dihydroxyphenyl)carbonyl]amino}-3-(L-seryloxy)propanoyl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 MCK sing 276 n n C1 C2 MCK doub 277 n y C1 C6 MCK sing 278 n y O10 C2 MCK sing 279 n n C2 C3 MCK sing 280 n y C3 O11 MCK sing 281 n n C3 C4 MCK doub 282 n y C5 C4 MCK sing 283 n y C4 H4 MCK sing 284 n n C6 C5 MCK doub 285 n y C5 H5 MCK sing 286 n n C6 H6 MCK sing 287 n n N9 C7 MCK sing 288 n n O8 C7 MCK doub 289 n n C12 N9 MCK sing 290 n n N9 HN9 MCK sing 291 n n O10 HO10 MCK sing 292 n n O11 HO11 MCK sing 293 n n C13 C12 MCK sing 294 n n C14 C12 MCK sing 295 n n C12 H12 MCK sing 296 n n O16 C13 MCK doub 297 n n C13 O17 MCK sing 298 n n O15 C14 MCK sing 299 n n C14 H14 MCK sing 300 n n C14 H14A MCK sing 301 n n O15 C24 MCK sing 302 n n C18 O17 MCK sing 303 n n C18 C19 MCK sing 304 n n C18 H18 MCK sing 305 n n C18 H18A MCK sing 306 n n C21 C19 MCK sing 307 n n C19 N20 MCK sing 308 n n C19 H19 MCK sing 309 n n N20 C29 MCK sing 310 n n N20 HN20 MCK sing 311 n n O22 C21 MCK doub 312 n n C21 O23 MCK sing 313 n n O23 HO23 MCK sing 314 n n C24 C26 MCK sing 315 n n C24 O25 MCK doub 316 n n N27 C26 MCK sing 317 n n C26 C28 MCK sing 318 n n C26 H26 MCK sing 319 n n N27 HN27 MCK sing 320 n n N27 HN2A MCK sing 321 n n C28 O45 MCK sing 322 n n C28 H28 MCK sing 323 n n C28 H28A MCK sing 324 n n O30 C29 MCK doub 325 n n C29 C31 MCK sing 326 n n C31 C32 MCK doub 327 n y C31 C36 MCK sing 328 n y O37 C32 MCK sing 329 n n C32 C33 MCK sing 330 n y C33 O38 MCK sing 331 n n C33 C34 MCK doub 332 n y C35 C34 MCK sing 333 n y C34 H34 MCK sing 334 n n C36 C35 MCK doub 335 n y C35 H35 MCK sing 336 n n C36 H36 MCK sing 337 n n O37 HO37 MCK sing 338 n n O38 HO38 MCK sing 339 n n O45 HO45 MCK sing 340 n n # _atom_sites.entry_id 3K3L _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DBS A 1 301 301 DBS DBS . E 3 DBH A 1 303 303 DBH DBH . F 3 DBH A 1 179 303 DBH DBH . G 4 GOL A 1 3731 3731 GOL GOL . H 4 GOL A 1 180 3731 GOL GOL . I 5 NA A 1 181 1 NA NA . J 6 SO4 A 1 182 1 SO4 SO4 . K 7 MCK C 1 179 1 MCK MCC . L 4 GOL C 1 3731 3731 GOL GOL . M 4 GOL C 1 180 3731 GOL GOL . N 4 GOL C 1 181 3731 GOL GOL . O 4 GOL C 1 182 3731 GOL GOL . P 4 GOL C 1 183 3731 GOL GOL . Q 5 NA C 1 184 2 NA NA . R 8 CL C 1 185 1 CL CL . S 9 HOH A 1 183 2 HOH HOH . S 9 HOH A 2 184 4 HOH HOH . S 9 HOH A 3 185 5 HOH HOH . S 9 HOH A 4 186 6 HOH HOH . S 9 HOH A 5 187 7 HOH HOH . S 9 HOH A 6 188 8 HOH HOH . S 9 HOH A 7 189 9 HOH HOH . S 9 HOH A 8 190 10 HOH HOH . S 9 HOH A 9 191 11 HOH HOH . S 9 HOH A 10 192 30 HOH HOH . S 9 HOH A 11 193 34 HOH HOH . S 9 HOH A 12 194 35 HOH HOH . S 9 HOH A 13 195 36 HOH HOH . S 9 HOH A 14 196 40 HOH HOH . S 9 HOH A 15 197 45 HOH HOH . S 9 HOH A 16 198 46 HOH HOH . S 9 HOH A 17 199 50 HOH HOH . S 9 HOH A 18 200 57 HOH HOH . S 9 HOH A 19 201 60 HOH HOH . S 9 HOH A 20 202 67 HOH HOH . S 9 HOH A 21 203 76 HOH HOH . S 9 HOH A 22 204 82 HOH HOH . S 9 HOH A 23 205 87 HOH HOH . S 9 HOH A 24 206 88 HOH HOH . S 9 HOH A 25 207 93 HOH HOH . S 9 HOH A 26 208 95 HOH HOH . S 9 HOH A 27 209 96 HOH HOH . S 9 HOH A 28 210 98 HOH HOH . S 9 HOH A 29 211 101 HOH HOH . S 9 HOH A 30 212 110 HOH HOH . S 9 HOH A 31 213 117 HOH HOH . S 9 HOH A 32 214 118 HOH HOH . S 9 HOH A 33 215 119 HOH HOH . S 9 HOH A 34 216 120 HOH HOH . S 9 HOH A 35 217 121 HOH HOH . S 9 HOH A 36 218 122 HOH HOH . S 9 HOH A 37 219 123 HOH HOH . S 9 HOH A 38 220 124 HOH HOH . S 9 HOH A 39 221 138 HOH HOH . S 9 HOH A 40 222 148 HOH HOH . S 9 HOH A 41 223 150 HOH HOH . T 9 HOH B 1 179 41 HOH HOH . T 9 HOH B 2 180 44 HOH HOH . T 9 HOH B 3 181 51 HOH HOH . T 9 HOH B 4 182 62 HOH HOH . T 9 HOH B 5 183 65 HOH HOH . T 9 HOH B 6 184 71 HOH HOH . T 9 HOH B 7 185 78 HOH HOH . T 9 HOH B 8 186 86 HOH HOH . T 9 HOH B 9 187 103 HOH HOH . T 9 HOH B 10 188 125 HOH HOH . T 9 HOH B 11 189 126 HOH HOH . T 9 HOH B 12 190 144 HOH HOH . T 9 HOH B 13 191 145 HOH HOH . T 9 HOH B 14 192 146 HOH HOH . U 9 HOH C 1 186 3 HOH HOH . U 9 HOH C 2 187 13 HOH HOH . U 9 HOH C 3 188 14 HOH HOH . U 9 HOH C 4 189 15 HOH HOH . U 9 HOH C 5 190 16 HOH HOH . U 9 HOH C 6 191 17 HOH HOH . U 9 HOH C 7 192 18 HOH HOH . U 9 HOH C 8 193 19 HOH HOH . U 9 HOH C 9 194 22 HOH HOH . U 9 HOH C 10 195 23 HOH HOH . U 9 HOH C 11 196 24 HOH HOH . U 9 HOH C 12 197 25 HOH HOH . U 9 HOH C 13 198 26 HOH HOH . U 9 HOH C 14 199 27 HOH HOH . U 9 HOH C 15 200 28 HOH HOH . U 9 HOH C 16 201 33 HOH HOH . U 9 HOH C 17 202 37 HOH HOH . U 9 HOH C 18 203 38 HOH HOH . U 9 HOH C 19 204 39 HOH HOH . U 9 HOH C 20 205 42 HOH HOH . U 9 HOH C 21 206 43 HOH HOH . U 9 HOH C 22 207 47 HOH HOH . U 9 HOH C 23 208 49 HOH HOH . U 9 HOH C 24 209 53 HOH HOH . U 9 HOH C 25 210 56 HOH HOH . U 9 HOH C 26 211 58 HOH HOH . U 9 HOH C 27 212 59 HOH HOH . U 9 HOH C 28 213 61 HOH HOH . U 9 HOH C 29 214 64 HOH HOH . U 9 HOH C 30 215 66 HOH HOH . U 9 HOH C 31 216 68 HOH HOH . U 9 HOH C 32 217 70 HOH HOH . U 9 HOH C 33 218 77 HOH HOH . U 9 HOH C 34 219 81 HOH HOH . U 9 HOH C 35 220 89 HOH HOH . U 9 HOH C 36 221 91 HOH HOH . U 9 HOH C 37 222 99 HOH HOH . U 9 HOH C 38 223 100 HOH HOH . U 9 HOH C 39 224 102 HOH HOH . U 9 HOH C 40 225 104 HOH HOH . U 9 HOH C 41 226 106 HOH HOH . U 9 HOH C 42 227 107 HOH HOH . U 9 HOH C 43 228 115 HOH HOH . U 9 HOH C 44 229 116 HOH HOH . U 9 HOH C 45 230 128 HOH HOH . U 9 HOH C 46 231 129 HOH HOH . U 9 HOH C 47 232 130 HOH HOH . U 9 HOH C 48 233 131 HOH HOH . U 9 HOH C 49 234 132 HOH HOH . U 9 HOH C 50 235 133 HOH HOH . U 9 HOH C 51 236 134 HOH HOH . U 9 HOH C 52 237 135 HOH HOH . U 9 HOH C 53 238 136 HOH HOH . U 9 HOH C 54 239 137 HOH HOH . U 9 HOH C 55 240 139 HOH HOH . U 9 HOH C 56 241 140 HOH HOH . U 9 HOH C 57 242 141 HOH HOH . U 9 HOH C 58 243 142 HOH HOH . U 9 HOH C 59 244 143 HOH HOH . U 9 HOH C 60 245 147 HOH HOH . U 9 HOH C 61 246 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MCK . . . K 7 52.173 40.548 43.345 1 60.4 ? C1 MCK 179 C 1 HETATM 2 C C2 MCK . . . K 7 50.869 40.169 43.647 1 60.21 ? C2 MCK 179 C 1 HETATM 3 C C3 MCK . . . K 7 50.316 40.496 44.873 1 59.91 ? C3 MCK 179 C 1 HETATM 4 C C4 MCK . . . K 7 51.048 41.207 45.816 1 59.07 ? C4 MCK 179 C 1 HETATM 5 C C5 MCK . . . K 7 52.347 41.593 45.521 1 59.09 ? C5 MCK 179 C 1 HETATM 6 C C6 MCK . . . K 7 52.909 41.267 44.29 1 59.52 ? C6 MCK 179 C 1 HETATM 7 C C7 MCK . . . K 7 52.798 40.216 42.016 1 62.02 ? C7 MCK 179 C 1 HETATM 8 O O8 MCK . . . K 7 54.011 40.295 41.904 1 61.17 ? O8 MCK 179 C 1 HETATM 9 N N9 MCK . . . K 7 52.017 39.904 40.976 1 64.98 ? N9 MCK 179 C 1 HETATM 10 O O10 MCK . . . K 7 50.112 39.472 42.754 1 59.81 ? O10 MCK 179 C 1 HETATM 11 O O11 MCK . . . K 7 49.045 40.116 45.15 1 60.45 ? O11 MCK 179 C 1 HETATM 12 C C12 MCK . . . K 7 52.524 39.782 39.617 1 66.93 ? C12 MCK 179 C 1 HETATM 13 C C13 MCK . . . K 7 51.412 39.849 38.598 1 67.56 ? C13 MCK 179 C 1 HETATM 14 C C14 MCK . . . K 7 53.338 38.504 39.436 1 67.7 ? C14 MCK 179 C 1 HETATM 15 O O15 MCK . . . K 7 52.471 37.374 39.383 1 69.09 ? O15 MCK 179 C 1 HETATM 16 O O16 MCK . . . K 7 51.58 39.404 37.473 1 67.26 ? O16 MCK 179 C 1 HETATM 17 O O17 MCK . . . K 7 50.129 40.455 38.951 1 68.82 ? O17 MCK 179 C 1 HETATM 18 C C18 MCK . . . K 7 49.078 40.662 37.997 1 70.1 ? C18 MCK 179 C 1 HETATM 19 C C19 MCK . . . K 7 47.842 39.819 38.34 1 71 ? C19 MCK 179 C 1 HETATM 20 N N20 MCK . . . K 7 48.023 39.152 39.621 1 71.85 ? N20 MCK 179 C 1 HETATM 21 C C21 MCK . . . K 7 47.539 38.842 37.237 1 71.07 ? C21 MCK 179 C 1 HETATM 22 O O22 MCK . . . K 7 47.169 39.239 36.143 1 70.86 ? O22 MCK 179 C 1 HETATM 23 O O23 MCK . . . K 7 47.675 37.41 37.455 1 71.23 ? O23 MCK 179 C 1 HETATM 24 C C24 MCK . . . K 7 52.678 36.22 40.245 1 70.4 ? C24 MCK 179 C 1 HETATM 25 O O25 MCK . . . K 7 51.735 35.833 40.919 1 70.88 ? O25 MCK 179 C 1 HETATM 26 C C26 MCK . . . K 7 54.003 35.505 40.306 1 70.5 ? C26 MCK 179 C 1 HETATM 27 N N27 MCK . . . K 7 54.921 36.005 39.297 1 70.56 ? N27 MCK 179 C 1 HETATM 28 C C28 MCK . . . K 7 54.638 35.68 41.68 1 70.43 ? C28 MCK 179 C 1 HETATM 29 C C29 MCK . . . K 7 47.006 38.766 40.393 1 72.33 ? C29 MCK 179 C 1 HETATM 30 O O30 MCK . . . K 7 45.836 38.899 40.064 1 72.27 ? O30 MCK 179 C 1 HETATM 31 C C31 MCK . . . K 7 47.332 38.165 41.732 1 72.73 ? C31 MCK 179 C 1 HETATM 32 C C32 MCK . . . K 7 48.041 36.972 41.826 1 73.18 ? C32 MCK 179 C 1 HETATM 33 C C33 MCK . . . K 7 48.338 36.431 43.074 1 73.24 ? C33 MCK 179 C 1 HETATM 34 C C34 MCK . . . K 7 47.927 37.085 44.233 1 73.04 ? C34 MCK 179 C 1 HETATM 35 C C35 MCK . . . K 7 47.217 38.275 44.138 1 72.9 ? C35 MCK 179 C 1 HETATM 36 C C36 MCK . . . K 7 46.926 38.821 42.891 1 72.77 ? C36 MCK 179 C 1 HETATM 37 O O37 MCK . . . K 7 48.447 36.327 40.696 1 73.42 ? O37 MCK 179 C 1 HETATM 38 O O38 MCK . . . K 7 49.029 35.261 43.174 1 72.94 ? O38 MCK 179 C 1 HETATM 39 O O45 MCK . . . K 7 55.628 34.662 41.864 1 70.83 ? O45 MCK 179 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #