data_3K3L
#
_model_server_result.job_id            vkvXXFgiDz7cj0SzLPPh5g 
_model_server_result.datetime_utc      '2025-01-10 08:24:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k3l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":180}' 
#
_entry.id    3K3L 
#
_exptl.entry_id    3K3L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3K3L 
_cell.length_a            114.2 
_cell.length_b            114.2 
_cell.length_c            119.3 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K3L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,S 1 1 
B,T 2 1 
C,K,L,M,N,O,P,Q,R,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A OG1 THR 54 A THR 54 1_555 I NA NA . A NA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? 
metalc ? metalc2 A OH TYR 138 A TYR 138 1_555 I NA NA . A NA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? 
metalc ? metalc3 C OG1 THR 54 C THR 54 1_555 Q NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? 
metalc ? metalc4 C OH TYR 138 C TYR 138 1_555 Q NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 174 n n 
C1 C2 GOL sing 175 n n 
C1 H11 GOL sing 176 n n 
C1 H12 GOL sing 177 n n 
O1 HO1 GOL sing 178 n n 
C2 O2 GOL sing 179 n n 
C2 C3 GOL sing 180 n n 
C2 H2 GOL sing 181 n n 
O2 HO2 GOL sing 182 n n 
C3 O3 GOL sing 183 n n 
C3 H31 GOL sing 184 n n 
C3 H32 GOL sing 185 n n 
O3 HO3 GOL sing 186 n n 
#
_atom_sites.entry_id                     3K3L 
_atom_sites.fract_transf_matrix[1][1]    0.008757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 DBS A 1 301 301 DBS DBS . 
E 3 DBH A 1 303 303 DBH DBH . 
F 3 DBH A 1 179 303 DBH DBH . 
G 4 GOL A 1 3731 3731 GOL GOL . 
H 4 GOL A 1 180 3731 GOL GOL . 
I 5 NA A 1 181 1 NA NA . 
J 6 SO4 A 1 182 1 SO4 SO4 . 
K 7 MCK C 1 179 1 MCK MCC . 
L 4 GOL C 1 3731 3731 GOL GOL . 
M 4 GOL C 1 180 3731 GOL GOL . 
N 4 GOL C 1 181 3731 GOL GOL . 
O 4 GOL C 1 182 3731 GOL GOL . 
P 4 GOL C 1 183 3731 GOL GOL . 
Q 5 NA C 1 184 2 NA NA . 
R 8 CL C 1 185 1 CL CL . 
S 9 HOH A 1 183 2 HOH HOH . 
S 9 HOH A 2 184 4 HOH HOH . 
S 9 HOH A 3 185 5 HOH HOH . 
S 9 HOH A 4 186 6 HOH HOH . 
S 9 HOH A 5 187 7 HOH HOH . 
S 9 HOH A 6 188 8 HOH HOH . 
S 9 HOH A 7 189 9 HOH HOH . 
S 9 HOH A 8 190 10 HOH HOH . 
S 9 HOH A 9 191 11 HOH HOH . 
S 9 HOH A 10 192 30 HOH HOH . 
S 9 HOH A 11 193 34 HOH HOH . 
S 9 HOH A 12 194 35 HOH HOH . 
S 9 HOH A 13 195 36 HOH HOH . 
S 9 HOH A 14 196 40 HOH HOH . 
S 9 HOH A 15 197 45 HOH HOH . 
S 9 HOH A 16 198 46 HOH HOH . 
S 9 HOH A 17 199 50 HOH HOH . 
S 9 HOH A 18 200 57 HOH HOH . 
S 9 HOH A 19 201 60 HOH HOH . 
S 9 HOH A 20 202 67 HOH HOH . 
S 9 HOH A 21 203 76 HOH HOH . 
S 9 HOH A 22 204 82 HOH HOH . 
S 9 HOH A 23 205 87 HOH HOH . 
S 9 HOH A 24 206 88 HOH HOH . 
S 9 HOH A 25 207 93 HOH HOH . 
S 9 HOH A 26 208 95 HOH HOH . 
S 9 HOH A 27 209 96 HOH HOH . 
S 9 HOH A 28 210 98 HOH HOH . 
S 9 HOH A 29 211 101 HOH HOH . 
S 9 HOH A 30 212 110 HOH HOH . 
S 9 HOH A 31 213 117 HOH HOH . 
S 9 HOH A 32 214 118 HOH HOH . 
S 9 HOH A 33 215 119 HOH HOH . 
S 9 HOH A 34 216 120 HOH HOH . 
S 9 HOH A 35 217 121 HOH HOH . 
S 9 HOH A 36 218 122 HOH HOH . 
S 9 HOH A 37 219 123 HOH HOH . 
S 9 HOH A 38 220 124 HOH HOH . 
S 9 HOH A 39 221 138 HOH HOH . 
S 9 HOH A 40 222 148 HOH HOH . 
S 9 HOH A 41 223 150 HOH HOH . 
T 9 HOH B 1 179 41 HOH HOH . 
T 9 HOH B 2 180 44 HOH HOH . 
T 9 HOH B 3 181 51 HOH HOH . 
T 9 HOH B 4 182 62 HOH HOH . 
T 9 HOH B 5 183 65 HOH HOH . 
T 9 HOH B 6 184 71 HOH HOH . 
T 9 HOH B 7 185 78 HOH HOH . 
T 9 HOH B 8 186 86 HOH HOH . 
T 9 HOH B 9 187 103 HOH HOH . 
T 9 HOH B 10 188 125 HOH HOH . 
T 9 HOH B 11 189 126 HOH HOH . 
T 9 HOH B 12 190 144 HOH HOH . 
T 9 HOH B 13 191 145 HOH HOH . 
T 9 HOH B 14 192 146 HOH HOH . 
U 9 HOH C 1 186 3 HOH HOH . 
U 9 HOH C 2 187 13 HOH HOH . 
U 9 HOH C 3 188 14 HOH HOH . 
U 9 HOH C 4 189 15 HOH HOH . 
U 9 HOH C 5 190 16 HOH HOH . 
U 9 HOH C 6 191 17 HOH HOH . 
U 9 HOH C 7 192 18 HOH HOH . 
U 9 HOH C 8 193 19 HOH HOH . 
U 9 HOH C 9 194 22 HOH HOH . 
U 9 HOH C 10 195 23 HOH HOH . 
U 9 HOH C 11 196 24 HOH HOH . 
U 9 HOH C 12 197 25 HOH HOH . 
U 9 HOH C 13 198 26 HOH HOH . 
U 9 HOH C 14 199 27 HOH HOH . 
U 9 HOH C 15 200 28 HOH HOH . 
U 9 HOH C 16 201 33 HOH HOH . 
U 9 HOH C 17 202 37 HOH HOH . 
U 9 HOH C 18 203 38 HOH HOH . 
U 9 HOH C 19 204 39 HOH HOH . 
U 9 HOH C 20 205 42 HOH HOH . 
U 9 HOH C 21 206 43 HOH HOH . 
U 9 HOH C 22 207 47 HOH HOH . 
U 9 HOH C 23 208 49 HOH HOH . 
U 9 HOH C 24 209 53 HOH HOH . 
U 9 HOH C 25 210 56 HOH HOH . 
U 9 HOH C 26 211 58 HOH HOH . 
U 9 HOH C 27 212 59 HOH HOH . 
U 9 HOH C 28 213 61 HOH HOH . 
U 9 HOH C 29 214 64 HOH HOH . 
U 9 HOH C 30 215 66 HOH HOH . 
U 9 HOH C 31 216 68 HOH HOH . 
U 9 HOH C 32 217 70 HOH HOH . 
U 9 HOH C 33 218 77 HOH HOH . 
U 9 HOH C 34 219 81 HOH HOH . 
U 9 HOH C 35 220 89 HOH HOH . 
U 9 HOH C 36 221 91 HOH HOH . 
U 9 HOH C 37 222 99 HOH HOH . 
U 9 HOH C 38 223 100 HOH HOH . 
U 9 HOH C 39 224 102 HOH HOH . 
U 9 HOH C 40 225 104 HOH HOH . 
U 9 HOH C 41 226 106 HOH HOH . 
U 9 HOH C 42 227 107 HOH HOH . 
U 9 HOH C 43 228 115 HOH HOH . 
U 9 HOH C 44 229 116 HOH HOH . 
U 9 HOH C 45 230 128 HOH HOH . 
U 9 HOH C 46 231 129 HOH HOH . 
U 9 HOH C 47 232 130 HOH HOH . 
U 9 HOH C 48 233 131 HOH HOH . 
U 9 HOH C 49 234 132 HOH HOH . 
U 9 HOH C 50 235 133 HOH HOH . 
U 9 HOH C 51 236 134 HOH HOH . 
U 9 HOH C 52 237 135 HOH HOH . 
U 9 HOH C 53 238 136 HOH HOH . 
U 9 HOH C 54 239 137 HOH HOH . 
U 9 HOH C 55 240 139 HOH HOH . 
U 9 HOH C 56 241 140 HOH HOH . 
U 9 HOH C 57 242 141 HOH HOH . 
U 9 HOH C 58 243 142 HOH HOH . 
U 9 HOH C 59 244 143 HOH HOH . 
U 9 HOH C 60 245 147 HOH HOH . 
U 9 HOH C 61 246 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 41.682 58.356 58.396 1 54.85 ? C1 GOL 180 A 1 
HETATM 2 O O1 GOL . . . H 4 40.842 58.036 59.486 1 55.08 ? O1 GOL 180 A 1 
HETATM 3 C C2 GOL . . . H 4 41.908 59.868 58.286 1 54.62 ? C2 GOL 180 A 1 
HETATM 4 O O2 GOL . . . H 4 41.479 60.524 59.455 1 54.64 ? O2 GOL 180 A 1 
HETATM 5 C C3 GOL . . . H 4 43.382 60.192 58.059 1 54.1 ? C3 GOL 180 A 1 
HETATM 6 O O3 GOL . . . H 4 43.826 59.676 56.824 1 53.61 ? O3 GOL 180 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#