data_3K3L # _model_server_result.job_id G3oJBjJ46rNnh5mdLxE7mg _model_server_result.datetime_utc '2025-01-10 08:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3K3L # _exptl.entry_id 3K3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K3L _cell.length_a 114.2 _cell.length_b 114.2 _cell.length_c 119.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,S 1 1 B,T 2 1 C,K,L,M,N,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OG1 THR 54 A THR 54 1_555 I NA NA . A NA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc2 A OH TYR 138 A TYR 138 1_555 I NA NA . A NA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc3 C OG1 THR 54 C THR 54 1_555 Q NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc4 C OH TYR 138 C TYR 138 1_555 Q NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? # _chem_comp.formula 'C10 H11 N O6' _chem_comp.formula_weight 241.197 _chem_comp.id DBS _chem_comp.mon_nstd_flag n _chem_comp.name '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 2,3,-DIHYDROXYBENZOYLSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 DBS sing 100 n n O4 HO4 DBS sing 101 n n C4 C7 DBS doub 102 n y C4 C1 DBS sing 103 n y C7 C10 DBS sing 104 n y C7 HC7 DBS sing 105 n n C1 O1 DBS sing 106 n n C1 C16 DBS doub 107 n y O1 HO1 DBS sing 108 n n C16 C13 DBS sing 109 n y C16 C19 DBS sing 110 n n C13 C10 DBS doub 111 n y C13 HC13 DBS sing 112 n n C10 HC10 DBS sing 113 n n C19 O7 DBS doub 114 n n C19 N1 DBS sing 115 n n N1 C22 DBS sing 116 n n N1 HN1 DBS sing 117 n n C22 C28 DBS sing 118 n n C22 C25 DBS sing 119 n n C22 HC22 DBS sing 120 n n C28 O13 DBS sing 121 n n C28 H281 DBS sing 122 n n C28 H282 DBS sing 123 n n O13 HO13 DBS sing 124 n n C25 O10 DBS doub 125 n n C25 O15 DBS sing 126 n n O15 HO15 DBS sing 127 n n # _atom_sites.entry_id 3K3L _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DBS A 1 301 301 DBS DBS . E 3 DBH A 1 303 303 DBH DBH . F 3 DBH A 1 179 303 DBH DBH . G 4 GOL A 1 3731 3731 GOL GOL . H 4 GOL A 1 180 3731 GOL GOL . I 5 NA A 1 181 1 NA NA . J 6 SO4 A 1 182 1 SO4 SO4 . K 7 MCK C 1 179 1 MCK MCC . L 4 GOL C 1 3731 3731 GOL GOL . M 4 GOL C 1 180 3731 GOL GOL . N 4 GOL C 1 181 3731 GOL GOL . O 4 GOL C 1 182 3731 GOL GOL . P 4 GOL C 1 183 3731 GOL GOL . Q 5 NA C 1 184 2 NA NA . R 8 CL C 1 185 1 CL CL . S 9 HOH A 1 183 2 HOH HOH . S 9 HOH A 2 184 4 HOH HOH . S 9 HOH A 3 185 5 HOH HOH . S 9 HOH A 4 186 6 HOH HOH . S 9 HOH A 5 187 7 HOH HOH . S 9 HOH A 6 188 8 HOH HOH . S 9 HOH A 7 189 9 HOH HOH . S 9 HOH A 8 190 10 HOH HOH . S 9 HOH A 9 191 11 HOH HOH . S 9 HOH A 10 192 30 HOH HOH . S 9 HOH A 11 193 34 HOH HOH . S 9 HOH A 12 194 35 HOH HOH . S 9 HOH A 13 195 36 HOH HOH . S 9 HOH A 14 196 40 HOH HOH . S 9 HOH A 15 197 45 HOH HOH . S 9 HOH A 16 198 46 HOH HOH . S 9 HOH A 17 199 50 HOH HOH . S 9 HOH A 18 200 57 HOH HOH . S 9 HOH A 19 201 60 HOH HOH . S 9 HOH A 20 202 67 HOH HOH . S 9 HOH A 21 203 76 HOH HOH . S 9 HOH A 22 204 82 HOH HOH . S 9 HOH A 23 205 87 HOH HOH . S 9 HOH A 24 206 88 HOH HOH . S 9 HOH A 25 207 93 HOH HOH . S 9 HOH A 26 208 95 HOH HOH . S 9 HOH A 27 209 96 HOH HOH . S 9 HOH A 28 210 98 HOH HOH . S 9 HOH A 29 211 101 HOH HOH . S 9 HOH A 30 212 110 HOH HOH . S 9 HOH A 31 213 117 HOH HOH . S 9 HOH A 32 214 118 HOH HOH . S 9 HOH A 33 215 119 HOH HOH . S 9 HOH A 34 216 120 HOH HOH . S 9 HOH A 35 217 121 HOH HOH . S 9 HOH A 36 218 122 HOH HOH . S 9 HOH A 37 219 123 HOH HOH . S 9 HOH A 38 220 124 HOH HOH . S 9 HOH A 39 221 138 HOH HOH . S 9 HOH A 40 222 148 HOH HOH . S 9 HOH A 41 223 150 HOH HOH . T 9 HOH B 1 179 41 HOH HOH . T 9 HOH B 2 180 44 HOH HOH . T 9 HOH B 3 181 51 HOH HOH . T 9 HOH B 4 182 62 HOH HOH . T 9 HOH B 5 183 65 HOH HOH . T 9 HOH B 6 184 71 HOH HOH . T 9 HOH B 7 185 78 HOH HOH . T 9 HOH B 8 186 86 HOH HOH . T 9 HOH B 9 187 103 HOH HOH . T 9 HOH B 10 188 125 HOH HOH . T 9 HOH B 11 189 126 HOH HOH . T 9 HOH B 12 190 144 HOH HOH . T 9 HOH B 13 191 145 HOH HOH . T 9 HOH B 14 192 146 HOH HOH . U 9 HOH C 1 186 3 HOH HOH . U 9 HOH C 2 187 13 HOH HOH . U 9 HOH C 3 188 14 HOH HOH . U 9 HOH C 4 189 15 HOH HOH . U 9 HOH C 5 190 16 HOH HOH . U 9 HOH C 6 191 17 HOH HOH . U 9 HOH C 7 192 18 HOH HOH . U 9 HOH C 8 193 19 HOH HOH . U 9 HOH C 9 194 22 HOH HOH . U 9 HOH C 10 195 23 HOH HOH . U 9 HOH C 11 196 24 HOH HOH . U 9 HOH C 12 197 25 HOH HOH . U 9 HOH C 13 198 26 HOH HOH . U 9 HOH C 14 199 27 HOH HOH . U 9 HOH C 15 200 28 HOH HOH . U 9 HOH C 16 201 33 HOH HOH . U 9 HOH C 17 202 37 HOH HOH . U 9 HOH C 18 203 38 HOH HOH . U 9 HOH C 19 204 39 HOH HOH . U 9 HOH C 20 205 42 HOH HOH . U 9 HOH C 21 206 43 HOH HOH . U 9 HOH C 22 207 47 HOH HOH . U 9 HOH C 23 208 49 HOH HOH . U 9 HOH C 24 209 53 HOH HOH . U 9 HOH C 25 210 56 HOH HOH . U 9 HOH C 26 211 58 HOH HOH . U 9 HOH C 27 212 59 HOH HOH . U 9 HOH C 28 213 61 HOH HOH . U 9 HOH C 29 214 64 HOH HOH . U 9 HOH C 30 215 66 HOH HOH . U 9 HOH C 31 216 68 HOH HOH . U 9 HOH C 32 217 70 HOH HOH . U 9 HOH C 33 218 77 HOH HOH . U 9 HOH C 34 219 81 HOH HOH . U 9 HOH C 35 220 89 HOH HOH . U 9 HOH C 36 221 91 HOH HOH . U 9 HOH C 37 222 99 HOH HOH . U 9 HOH C 38 223 100 HOH HOH . U 9 HOH C 39 224 102 HOH HOH . U 9 HOH C 40 225 104 HOH HOH . U 9 HOH C 41 226 106 HOH HOH . U 9 HOH C 42 227 107 HOH HOH . U 9 HOH C 43 228 115 HOH HOH . U 9 HOH C 44 229 116 HOH HOH . U 9 HOH C 45 230 128 HOH HOH . U 9 HOH C 46 231 129 HOH HOH . U 9 HOH C 47 232 130 HOH HOH . U 9 HOH C 48 233 131 HOH HOH . U 9 HOH C 49 234 132 HOH HOH . U 9 HOH C 50 235 133 HOH HOH . U 9 HOH C 51 236 134 HOH HOH . U 9 HOH C 52 237 135 HOH HOH . U 9 HOH C 53 238 136 HOH HOH . U 9 HOH C 54 239 137 HOH HOH . U 9 HOH C 55 240 139 HOH HOH . U 9 HOH C 56 241 140 HOH HOH . U 9 HOH C 57 242 141 HOH HOH . U 9 HOH C 58 243 142 HOH HOH . U 9 HOH C 59 244 143 HOH HOH . U 9 HOH C 60 245 147 HOH HOH . U 9 HOH C 61 246 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 DBS . . . D 2 26.808 76.759 63.62 1 59.21 ? O4 DBS 301 A 1 HETATM 2 C C4 DBS . . . D 2 26.742 78.067 63.245 1 59.46 ? C4 DBS 301 A 1 HETATM 3 C C7 DBS . . . D 2 25.863 78.449 62.238 1 58.8 ? C7 DBS 301 A 1 HETATM 4 C C1 DBS . . . D 2 27.695 78.959 63.713 1 60.1 ? C1 DBS 301 A 1 HETATM 5 O O1 DBS . . . D 2 28.535 78.541 64.702 1 61.05 ? O1 DBS 301 A 1 HETATM 6 C C16 DBS . . . D 2 27.779 80.245 63.18 1 60.26 ? C16 DBS 301 A 1 HETATM 7 C C13 DBS . . . D 2 26.897 80.621 62.167 1 59.49 ? C13 DBS 301 A 1 HETATM 8 C C10 DBS . . . D 2 25.94 79.726 61.698 1 58.89 ? C10 DBS 301 A 1 HETATM 9 C C19 DBS . . . D 2 28.805 81.235 63.669 1 61.4 ? C19 DBS 301 A 1 HETATM 10 O O7 DBS . . . D 2 29.079 82.194 62.964 1 61.04 ? O7 DBS 301 A 1 HETATM 11 N N1 DBS . . . D 2 29.377 81.04 64.862 1 62.91 ? N1 DBS 301 A 1 HETATM 12 C C22 DBS . . . D 2 30.393 81.909 65.455 1 63.8 ? C22 DBS 301 A 1 HETATM 13 C C28 DBS . . . D 2 29.734 82.762 66.551 1 63.43 ? C28 DBS 301 A 1 HETATM 14 O O13 DBS . . . D 2 28.423 82.289 66.893 1 62.97 ? O13 DBS 301 A 1 HETATM 15 C C25 DBS . . . D 2 31.516 81.071 66.005 1 64.71 ? C25 DBS 301 A 1 HETATM 16 O O10 DBS . . . D 2 31.308 80.358 67.015 1 65.38 ? O10 DBS 301 A 1 HETATM 17 O O15 DBS . . . D 2 32.622 81.104 65.419 1 65.26 ? O15 DBS 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 17 #