data_3K43 # _model_server_result.job_id 5ScRN0oE_KrPDuNtmv26pg _model_server_result.datetime_utc '2024-12-01 19:05:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4001}' # _entry.id 3K43 # _exptl.entry_id 3K43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K43 _cell.length_a 102.978 _cell.length_b 102.978 _cell.length_c 99.818 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 119 A CYS 119 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 6 B CYS 6 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 106 B CYS 106 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 119 B CYS 119 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 81 A ASN 81 1_555 C C1 NAG . A NAG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 81 B ASN 81 1_555 G C1 NAG . B NAG 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 253 n n C1 O1 NAG sing 254 n n C1 O5 NAG sing 255 n n C1 H1 NAG sing 256 n n C2 C3 NAG sing 257 n n C2 N2 NAG sing 258 n n C2 H2 NAG sing 259 n n C3 C4 NAG sing 260 n n C3 O3 NAG sing 261 n n C3 H3 NAG sing 262 n n C4 C5 NAG sing 263 n n C4 O4 NAG sing 264 n n C4 H4 NAG sing 265 n n C5 C6 NAG sing 266 n n C5 O5 NAG sing 267 n n C5 H5 NAG sing 268 n n C6 O6 NAG sing 269 n n C6 H61 NAG sing 270 n n C6 H62 NAG sing 271 n n C7 C8 NAG sing 272 n n C7 N2 NAG sing 273 n n C7 O7 NAG doub 274 n n C8 H81 NAG sing 275 n n C8 H82 NAG sing 276 n n C8 H83 NAG sing 277 n n N2 HN2 NAG sing 278 n n O1 HO1 NAG sing 279 n n O3 HO3 NAG sing 280 n n O4 HO4 NAG sing 281 n n O6 HO6 NAG sing 282 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3K43 _atom_sites.fract_transf_matrix[1][1] 0.009711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 3001 3001 NAG NAG . D 3 SO4 A 1 6000 6000 SO4 SO4 . E 3 SO4 A 1 6002 6002 SO4 SO4 . F 4 ACT A 1 7000 7000 ACT ACT . G 2 NAG B 1 4001 4001 NAG NAG . H 5 IMD B 1 5000 5000 IMD IMD . I 3 SO4 B 1 6001 6001 SO4 SO4 . J 6 HOH A 1 155 155 HOH WAT . J 6 HOH A 2 156 1 HOH WAT . J 6 HOH A 3 157 5 HOH WAT . J 6 HOH A 4 158 6 HOH WAT . J 6 HOH A 5 159 8 HOH WAT . J 6 HOH A 6 160 160 HOH WAT . J 6 HOH A 7 161 11 HOH WAT . J 6 HOH A 8 162 12 HOH WAT . J 6 HOH A 9 163 163 HOH WAT . J 6 HOH A 10 164 164 HOH WAT . J 6 HOH A 11 165 13 HOH WAT . J 6 HOH A 12 166 15 HOH WAT . J 6 HOH A 13 167 167 HOH WAT . J 6 HOH A 14 168 168 HOH WAT . J 6 HOH A 15 169 17 HOH WAT . J 6 HOH A 16 170 170 HOH WAT . J 6 HOH A 17 171 18 HOH WAT . J 6 HOH A 18 172 21 HOH WAT . J 6 HOH A 19 173 24 HOH WAT . J 6 HOH A 20 174 25 HOH WAT . J 6 HOH A 21 175 26 HOH WAT . J 6 HOH A 22 176 28 HOH WAT . J 6 HOH A 23 177 34 HOH WAT . J 6 HOH A 24 178 35 HOH WAT . J 6 HOH A 25 179 41 HOH WAT . J 6 HOH A 26 180 42 HOH WAT . J 6 HOH A 27 181 43 HOH WAT . J 6 HOH A 28 182 46 HOH WAT . J 6 HOH A 29 183 47 HOH WAT . J 6 HOH A 30 184 51 HOH WAT . J 6 HOH A 31 185 57 HOH WAT . J 6 HOH A 32 186 58 HOH WAT . J 6 HOH A 33 187 59 HOH WAT . J 6 HOH A 34 188 61 HOH WAT . J 6 HOH A 35 189 64 HOH WAT . J 6 HOH A 36 190 66 HOH WAT . J 6 HOH A 37 191 68 HOH WAT . J 6 HOH A 38 192 69 HOH WAT . J 6 HOH A 39 193 72 HOH WAT . J 6 HOH A 40 194 75 HOH WAT . J 6 HOH A 41 195 77 HOH WAT . J 6 HOH A 42 196 81 HOH WAT . J 6 HOH A 43 197 82 HOH WAT . J 6 HOH A 44 198 84 HOH WAT . J 6 HOH A 45 199 85 HOH WAT . J 6 HOH A 46 200 90 HOH WAT . J 6 HOH A 47 201 91 HOH WAT . J 6 HOH A 48 202 95 HOH WAT . J 6 HOH A 49 203 96 HOH WAT . J 6 HOH A 50 204 98 HOH WAT . J 6 HOH A 51 205 100 HOH WAT . J 6 HOH A 52 206 104 HOH WAT . J 6 HOH A 53 207 106 HOH WAT . J 6 HOH A 54 208 109 HOH WAT . J 6 HOH A 55 209 112 HOH WAT . J 6 HOH A 56 210 113 HOH WAT . J 6 HOH A 57 211 114 HOH WAT . J 6 HOH A 58 212 121 HOH WAT . J 6 HOH A 59 213 122 HOH WAT . J 6 HOH A 60 214 123 HOH WAT . J 6 HOH A 61 215 130 HOH WAT . J 6 HOH A 62 216 131 HOH WAT . J 6 HOH A 63 217 133 HOH WAT . J 6 HOH A 64 218 134 HOH WAT . J 6 HOH A 65 219 137 HOH WAT . J 6 HOH A 66 220 140 HOH WAT . J 6 HOH A 67 221 141 HOH WAT . J 6 HOH A 68 222 146 HOH WAT . J 6 HOH A 69 223 148 HOH WAT . J 6 HOH A 70 224 150 HOH WAT . J 6 HOH A 71 225 152 HOH WAT . J 6 HOH A 72 7003 7003 HOH WAT . J 6 HOH A 73 7006 7006 HOH WAT . J 6 HOH A 74 7008 7008 HOH WAT . J 6 HOH A 75 7014 7014 HOH WAT . J 6 HOH A 76 7017 7017 HOH WAT . J 6 HOH A 77 7021 7021 HOH WAT . J 6 HOH A 78 7022 7022 HOH WAT . J 6 HOH A 79 7025 7025 HOH WAT . J 6 HOH A 80 7027 7027 HOH WAT . J 6 HOH A 81 7033 7033 HOH WAT . J 6 HOH A 82 7036 7036 HOH WAT . J 6 HOH A 83 7039 7039 HOH WAT . J 6 HOH A 84 7041 7041 HOH WAT . J 6 HOH A 85 7042 7042 HOH WAT . J 6 HOH A 86 7044 7044 HOH WAT . J 6 HOH A 87 7047 7047 HOH WAT . K 6 HOH B 1 155 2 HOH WAT . K 6 HOH B 2 156 3 HOH WAT . K 6 HOH B 3 157 157 HOH WAT . K 6 HOH B 4 158 4 HOH WAT . K 6 HOH B 5 159 159 HOH WAT . K 6 HOH B 6 160 7 HOH WAT . K 6 HOH B 7 161 161 HOH WAT . K 6 HOH B 8 162 162 HOH WAT . K 6 HOH B 9 163 9 HOH WAT . K 6 HOH B 10 164 10 HOH WAT . K 6 HOH B 11 165 165 HOH WAT . K 6 HOH B 12 166 166 HOH WAT . K 6 HOH B 13 167 14 HOH WAT . K 6 HOH B 14 168 16 HOH WAT . K 6 HOH B 15 169 19 HOH WAT . K 6 HOH B 16 170 20 HOH WAT . K 6 HOH B 17 171 22 HOH WAT . K 6 HOH B 18 172 27 HOH WAT . K 6 HOH B 19 173 30 HOH WAT . K 6 HOH B 20 174 31 HOH WAT . K 6 HOH B 21 175 32 HOH WAT . K 6 HOH B 22 176 33 HOH WAT . K 6 HOH B 23 177 36 HOH WAT . K 6 HOH B 24 178 37 HOH WAT . K 6 HOH B 25 179 38 HOH WAT . K 6 HOH B 26 180 39 HOH WAT . K 6 HOH B 27 181 40 HOH WAT . K 6 HOH B 28 182 44 HOH WAT . K 6 HOH B 29 183 45 HOH WAT . K 6 HOH B 30 184 48 HOH WAT . K 6 HOH B 31 185 49 HOH WAT . K 6 HOH B 32 186 50 HOH WAT . K 6 HOH B 33 187 52 HOH WAT . K 6 HOH B 34 188 53 HOH WAT . K 6 HOH B 35 189 54 HOH WAT . K 6 HOH B 36 190 55 HOH WAT . K 6 HOH B 37 191 56 HOH WAT . K 6 HOH B 38 192 60 HOH WAT . K 6 HOH B 39 193 62 HOH WAT . K 6 HOH B 40 194 65 HOH WAT . K 6 HOH B 41 195 67 HOH WAT . K 6 HOH B 42 196 70 HOH WAT . K 6 HOH B 43 197 71 HOH WAT . K 6 HOH B 44 198 73 HOH WAT . K 6 HOH B 45 199 74 HOH WAT . K 6 HOH B 46 200 76 HOH WAT . K 6 HOH B 47 201 78 HOH WAT . K 6 HOH B 48 202 80 HOH WAT . K 6 HOH B 49 203 83 HOH WAT . K 6 HOH B 50 204 86 HOH WAT . K 6 HOH B 51 205 87 HOH WAT . K 6 HOH B 52 206 88 HOH WAT . K 6 HOH B 53 207 89 HOH WAT . K 6 HOH B 54 208 92 HOH WAT . K 6 HOH B 55 209 94 HOH WAT . K 6 HOH B 56 210 97 HOH WAT . K 6 HOH B 57 211 101 HOH WAT . K 6 HOH B 58 212 103 HOH WAT . K 6 HOH B 59 213 105 HOH WAT . K 6 HOH B 60 214 108 HOH WAT . K 6 HOH B 61 215 111 HOH WAT . K 6 HOH B 62 216 115 HOH WAT . K 6 HOH B 63 217 116 HOH WAT . K 6 HOH B 64 218 117 HOH WAT . K 6 HOH B 65 219 118 HOH WAT . K 6 HOH B 66 220 119 HOH WAT . K 6 HOH B 67 221 120 HOH WAT . K 6 HOH B 68 222 124 HOH WAT . K 6 HOH B 69 223 125 HOH WAT . K 6 HOH B 70 224 126 HOH WAT . K 6 HOH B 71 225 127 HOH WAT . K 6 HOH B 72 226 128 HOH WAT . K 6 HOH B 73 227 129 HOH WAT . K 6 HOH B 74 228 132 HOH WAT . K 6 HOH B 75 229 135 HOH WAT . K 6 HOH B 76 230 136 HOH WAT . K 6 HOH B 77 231 138 HOH WAT . K 6 HOH B 78 232 142 HOH WAT . K 6 HOH B 79 233 143 HOH WAT . K 6 HOH B 80 234 144 HOH WAT . K 6 HOH B 81 235 145 HOH WAT . K 6 HOH B 82 236 147 HOH WAT . K 6 HOH B 83 237 149 HOH WAT . K 6 HOH B 84 238 151 HOH WAT . K 6 HOH B 85 239 153 HOH WAT . K 6 HOH B 86 240 154 HOH WAT . K 6 HOH B 87 7001 7001 HOH WAT . K 6 HOH B 88 7002 7002 HOH WAT . K 6 HOH B 89 7004 7004 HOH WAT . K 6 HOH B 90 7005 7005 HOH WAT . K 6 HOH B 91 7007 7007 HOH WAT . K 6 HOH B 92 7009 7009 HOH WAT . K 6 HOH B 93 7010 7010 HOH WAT . K 6 HOH B 94 7011 7011 HOH WAT . K 6 HOH B 95 7012 7012 HOH WAT . K 6 HOH B 96 7013 7013 HOH WAT . K 6 HOH B 97 7016 7016 HOH WAT . K 6 HOH B 98 7018 7018 HOH WAT . K 6 HOH B 99 7019 7019 HOH WAT . K 6 HOH B 100 7020 7020 HOH WAT . K 6 HOH B 101 7028 7028 HOH WAT . K 6 HOH B 102 7030 7030 HOH WAT . K 6 HOH B 103 7032 7032 HOH WAT . K 6 HOH B 104 7035 7035 HOH WAT . K 6 HOH B 105 7038 7038 HOH WAT . K 6 HOH B 106 7045 7045 HOH WAT . K 6 HOH B 107 7046 7046 HOH WAT . K 6 HOH B 108 7050 7050 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 2 8.367 69.6 -12.228 1 42.36 ? C1 NAG 4001 B 1 HETATM 2 C C2 NAG . . . G 2 7.166 69.608 -11.285 1 44.22 ? C2 NAG 4001 B 1 HETATM 3 C C3 NAG . . . G 2 5.964 68.993 -12.002 1 45.53 ? C3 NAG 4001 B 1 HETATM 4 C C4 NAG . . . G 2 5.679 69.769 -13.286 1 45.33 ? C4 NAG 4001 B 1 HETATM 5 C C5 NAG . . . G 2 6.941 69.908 -14.156 1 44.98 ? C5 NAG 4001 B 1 HETATM 6 C C6 NAG . . . G 2 6.698 70.905 -15.276 1 45.16 ? C6 NAG 4001 B 1 HETATM 7 C C7 NAG . . . G 2 7.759 69.562 -8.96 1 44.7 ? C7 NAG 4001 B 1 HETATM 8 C C8 NAG . . . G 2 8.926 69.061 -8.127 1 46.05 ? C8 NAG 4001 B 1 HETATM 9 N N2 NAG . . . G 2 7.457 68.887 -10.063 1 44.43 ? N2 NAG 4001 B 1 HETATM 10 O O3 NAG . . . G 2 4.821 69.042 -11.158 1 46.93 ? O3 NAG 4001 B 1 HETATM 11 O O4 NAG . . . G 2 4.665 69.103 -14.023 1 43.77 ? O4 NAG 4001 B 1 HETATM 12 O O5 NAG . . . G 2 8.061 70.412 -13.377 1 44.86 ? O5 NAG 4001 B 1 HETATM 13 O O6 NAG . . . G 2 7.435 70.571 -16.442 1 49.3 ? O6 NAG 4001 B 1 HETATM 14 O O7 NAG . . . G 2 7.144 70.566 -8.608 1 45.9 ? O7 NAG 4001 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #