data_3K4V
#
_model_server_result.job_id            aKfOEJ4_NujXoWN-h3x8vg 
_model_server_result.datetime_utc      '2024-11-04 22:57:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k4v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":902}' 
#
_entry.id    3K4V 
#
_exptl.entry_id    3K4V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.42 
_cell.angle_gamma         90 
_cell.entry_id            3K4V 
_cell.length_a            51.205 
_cell.length_b            62.673 
_cell.length_c            59.076 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K4V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARF 1 A ARF 0 1_555 A N PRO 2 A PRO 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 B C ARF 1 B ARF 0 1_555 B N PRO 2 B PRO 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 88 n n 
S C1 DMS sing 89 n n 
S C2 DMS sing 90 n n 
C1 H11 DMS sing 91 n n 
C1 H12 DMS sing 92 n n 
C1 H13 DMS sing 93 n n 
C2 H21 DMS sing 94 n n 
C2 H22 DMS sing 95 n n 
C2 H23 DMS sing 96 n n 
#
_atom_sites.entry_id                     3K4V 
_atom_sites.fract_transf_matrix[1][1]    0.019529 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002891 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015956 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017112 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DMS A 1 901 901 DMS DMS . 
F 3 DMS A 1 902 901 DMS DMS . 
G 4 ROC B 1 201 201 ROC ROC . 
H 5 CL B 1 202 801 CL CL . 
I 3 DMS C 1 901 901 DMS DMS . 
J 4 ROC D 1 201 201 ROC ROC . 
K 3 DMS D 1 202 901 DMS DMS . 
L 6 HOH A 1 1001 1003 HOH HOH . 
L 6 HOH A 2 1002 1005 HOH HOH . 
L 6 HOH A 3 1003 1014 HOH HOH . 
L 6 HOH A 4 1004 1016 HOH HOH . 
L 6 HOH A 5 1005 1017 HOH HOH . 
L 6 HOH A 6 1006 1020 HOH HOH . 
L 6 HOH A 7 1007 1022 HOH HOH . 
L 6 HOH A 8 1008 1023 HOH HOH . 
L 6 HOH A 9 1009 1028 HOH HOH . 
L 6 HOH A 10 1010 1038 HOH HOH . 
L 6 HOH A 11 1011 1041 HOH HOH . 
L 6 HOH A 12 1012 1044 HOH HOH . 
L 6 HOH A 13 1013 1048 HOH HOH . 
L 6 HOH A 14 1014 1052 HOH HOH . 
L 6 HOH A 15 1015 1053 HOH HOH . 
L 6 HOH A 16 1016 1054 HOH HOH . 
L 6 HOH A 17 1017 1058 HOH HOH . 
L 6 HOH A 18 1018 1064 HOH HOH . 
L 6 HOH A 19 1019 1065 HOH HOH . 
L 6 HOH A 20 1020 1066 HOH HOH . 
L 6 HOH A 21 1021 1071 HOH HOH . 
L 6 HOH A 22 1022 1072 HOH HOH . 
L 6 HOH A 23 1023 1080 HOH HOH . 
L 6 HOH A 24 1024 1084 HOH HOH . 
L 6 HOH A 25 1025 1087 HOH HOH . 
L 6 HOH A 26 1026 1089 HOH HOH . 
L 6 HOH A 27 1027 1094 HOH HOH . 
L 6 HOH A 28 1028 1095 HOH HOH . 
L 6 HOH A 29 1029 1099 HOH HOH . 
L 6 HOH A 30 1030 1100 HOH HOH . 
L 6 HOH A 31 1031 1101 HOH HOH . 
L 6 HOH A 32 1032 1107 HOH HOH . 
L 6 HOH A 33 1033 1113 HOH HOH . 
L 6 HOH A 34 1034 1114 HOH HOH . 
L 6 HOH A 35 1035 1117 HOH HOH . 
L 6 HOH A 36 1036 1119 HOH HOH . 
L 6 HOH A 37 1037 1120 HOH HOH . 
L 6 HOH A 38 1038 1123 HOH HOH . 
L 6 HOH A 39 1039 1127 HOH HOH . 
L 6 HOH A 40 1040 1128 HOH HOH . 
L 6 HOH A 41 1041 1131 HOH HOH . 
L 6 HOH A 42 1042 1132 HOH HOH . 
L 6 HOH A 43 1043 1137 HOH HOH . 
L 6 HOH A 44 1044 1140 HOH HOH . 
L 6 HOH A 45 1045 1150 HOH HOH . 
L 6 HOH A 46 1046 1153 HOH HOH . 
L 6 HOH A 47 1047 1154 HOH HOH . 
L 6 HOH A 48 1048 1162 HOH HOH . 
L 6 HOH A 49 1049 1164 HOH HOH . 
L 6 HOH A 50 1050 1165 HOH HOH . 
L 6 HOH A 51 1051 1166 HOH HOH . 
L 6 HOH A 52 1052 1169 HOH HOH . 
L 6 HOH A 53 1053 1170 HOH HOH . 
L 6 HOH A 54 1054 1174 HOH HOH . 
L 6 HOH A 55 1055 1176 HOH HOH . 
L 6 HOH A 56 1056 1180 HOH HOH . 
L 6 HOH A 57 1057 1181 HOH HOH . 
L 6 HOH A 58 1058 1182 HOH HOH . 
L 6 HOH A 59 1059 1185 HOH HOH . 
L 6 HOH A 60 1060 1188 HOH HOH . 
M 6 HOH B 1 301 1002 HOH HOH . 
M 6 HOH B 2 302 1006 HOH HOH . 
M 6 HOH B 3 303 1009 HOH HOH . 
M 6 HOH B 4 304 1024 HOH HOH . 
M 6 HOH B 5 305 1029 HOH HOH . 
M 6 HOH B 6 306 1040 HOH HOH . 
M 6 HOH B 7 307 1042 HOH HOH . 
M 6 HOH B 8 308 1051 HOH HOH . 
M 6 HOH B 9 309 1056 HOH HOH . 
M 6 HOH B 10 310 1059 HOH HOH . 
M 6 HOH B 11 311 1069 HOH HOH . 
M 6 HOH B 12 312 1078 HOH HOH . 
M 6 HOH B 13 313 1082 HOH HOH . 
M 6 HOH B 14 314 1085 HOH HOH . 
M 6 HOH B 15 315 1086 HOH HOH . 
M 6 HOH B 16 316 1090 HOH HOH . 
M 6 HOH B 17 317 1096 HOH HOH . 
M 6 HOH B 18 318 1098 HOH HOH . 
M 6 HOH B 19 319 1102 HOH HOH . 
M 6 HOH B 20 320 1106 HOH HOH . 
M 6 HOH B 21 321 1109 HOH HOH . 
M 6 HOH B 22 322 1112 HOH HOH . 
M 6 HOH B 23 323 1122 HOH HOH . 
M 6 HOH B 24 324 1133 HOH HOH . 
M 6 HOH B 25 325 1136 HOH HOH . 
M 6 HOH B 26 326 1138 HOH HOH . 
M 6 HOH B 27 327 1139 HOH HOH . 
M 6 HOH B 28 328 1141 HOH HOH . 
M 6 HOH B 29 329 1144 HOH HOH . 
M 6 HOH B 30 330 1147 HOH HOH . 
M 6 HOH B 31 331 1149 HOH HOH . 
M 6 HOH B 32 332 1151 HOH HOH . 
M 6 HOH B 33 333 1156 HOH HOH . 
M 6 HOH B 34 334 1157 HOH HOH . 
M 6 HOH B 35 335 1158 HOH HOH . 
M 6 HOH B 36 336 1161 HOH HOH . 
M 6 HOH B 37 337 1173 HOH HOH . 
M 6 HOH B 38 338 1179 HOH HOH . 
M 6 HOH B 39 339 1186 HOH HOH . 
N 6 HOH C 1 1001 1007 HOH HOH . 
N 6 HOH C 2 1002 1012 HOH HOH . 
N 6 HOH C 3 1003 1013 HOH HOH . 
N 6 HOH C 4 1004 1018 HOH HOH . 
N 6 HOH C 5 1005 1021 HOH HOH . 
N 6 HOH C 6 1006 1025 HOH HOH . 
N 6 HOH C 7 1007 1027 HOH HOH . 
N 6 HOH C 8 1008 1030 HOH HOH . 
N 6 HOH C 9 1009 1034 HOH HOH . 
N 6 HOH C 10 1010 1037 HOH HOH . 
N 6 HOH C 11 1011 1043 HOH HOH . 
N 6 HOH C 12 1012 1046 HOH HOH . 
N 6 HOH C 13 1013 1047 HOH HOH . 
N 6 HOH C 14 1014 1049 HOH HOH . 
N 6 HOH C 15 1015 1061 HOH HOH . 
N 6 HOH C 16 1016 1062 HOH HOH . 
N 6 HOH C 17 1017 1067 HOH HOH . 
N 6 HOH C 18 1018 1068 HOH HOH . 
N 6 HOH C 19 1019 1070 HOH HOH . 
N 6 HOH C 20 1020 1074 HOH HOH . 
N 6 HOH C 21 1021 1076 HOH HOH . 
N 6 HOH C 22 1022 1079 HOH HOH . 
N 6 HOH C 23 1023 1083 HOH HOH . 
N 6 HOH C 24 1024 1091 HOH HOH . 
N 6 HOH C 25 1025 1093 HOH HOH . 
N 6 HOH C 26 1026 1103 HOH HOH . 
N 6 HOH C 27 1027 1104 HOH HOH . 
N 6 HOH C 28 1028 1105 HOH HOH . 
N 6 HOH C 29 1029 1111 HOH HOH . 
N 6 HOH C 30 1030 1115 HOH HOH . 
N 6 HOH C 31 1031 1116 HOH HOH . 
N 6 HOH C 32 1032 1118 HOH HOH . 
N 6 HOH C 33 1033 1121 HOH HOH . 
N 6 HOH C 34 1034 1124 HOH HOH . 
N 6 HOH C 35 1035 1125 HOH HOH . 
N 6 HOH C 36 1036 1129 HOH HOH . 
N 6 HOH C 37 1037 1130 HOH HOH . 
N 6 HOH C 38 1038 1134 HOH HOH . 
N 6 HOH C 39 1039 1148 HOH HOH . 
N 6 HOH C 40 1040 1155 HOH HOH . 
N 6 HOH C 41 1041 1159 HOH HOH . 
N 6 HOH C 42 1042 1160 HOH HOH . 
N 6 HOH C 43 1043 1163 HOH HOH . 
N 6 HOH C 44 1044 1167 HOH HOH . 
N 6 HOH C 45 1045 1168 HOH HOH . 
N 6 HOH C 46 1046 1172 HOH HOH . 
N 6 HOH C 47 1047 1175 HOH HOH . 
N 6 HOH C 48 1048 1184 HOH HOH . 
O 6 HOH D 1 1001 1001 HOH HOH . 
O 6 HOH D 2 1002 1026 HOH HOH . 
O 6 HOH D 3 1003 1004 HOH HOH . 
O 6 HOH D 4 1004 1008 HOH HOH . 
O 6 HOH D 5 1005 1010 HOH HOH . 
O 6 HOH D 6 1006 1011 HOH HOH . 
O 6 HOH D 7 1007 1015 HOH HOH . 
O 6 HOH D 8 1008 1019 HOH HOH . 
O 6 HOH D 9 1009 1031 HOH HOH . 
O 6 HOH D 10 1010 1032 HOH HOH . 
O 6 HOH D 11 1011 1033 HOH HOH . 
O 6 HOH D 12 1012 1035 HOH HOH . 
O 6 HOH D 13 1013 1036 HOH HOH . 
O 6 HOH D 14 1014 1039 HOH HOH . 
O 6 HOH D 15 1015 1045 HOH HOH . 
O 6 HOH D 16 1016 1050 HOH HOH . 
O 6 HOH D 17 1017 1055 HOH HOH . 
O 6 HOH D 18 1018 1057 HOH HOH . 
O 6 HOH D 19 1019 1060 HOH HOH . 
O 6 HOH D 20 1020 1063 HOH HOH . 
O 6 HOH D 21 1021 1073 HOH HOH . 
O 6 HOH D 22 1022 1075 HOH HOH . 
O 6 HOH D 23 1023 1077 HOH HOH . 
O 6 HOH D 24 1024 1081 HOH HOH . 
O 6 HOH D 25 1025 1088 HOH HOH . 
O 6 HOH D 26 1026 1092 HOH HOH . 
O 6 HOH D 27 1027 1097 HOH HOH . 
O 6 HOH D 28 1028 1108 HOH HOH . 
O 6 HOH D 29 1029 1110 HOH HOH . 
O 6 HOH D 30 1030 1126 HOH HOH . 
O 6 HOH D 31 1031 1135 HOH HOH . 
O 6 HOH D 32 1032 1142 HOH HOH . 
O 6 HOH D 33 1033 1143 HOH HOH . 
O 6 HOH D 34 1034 1145 HOH HOH . 
O 6 HOH D 35 1035 1146 HOH HOH . 
O 6 HOH D 36 1036 1152 HOH HOH . 
O 6 HOH D 37 1037 1171 HOH HOH . 
O 6 HOH D 38 1038 1177 HOH HOH . 
O 6 HOH D 39 1039 1178 HOH HOH . 
O 6 HOH D 40 1040 1183 HOH HOH . 
O 6 HOH D 41 1041 1187 HOH HOH . 
O 6 HOH D 42 1042 1189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . F 3 -12.457 7.698 32.789 1 41.98 ? S DMS 902 A 1 
HETATM 2 O O DMS . . . F 3 -13.088 6.411 33.313 1 38.96 ? O DMS 902 A 1 
HETATM 3 C C1 DMS . . . F 3 -11.274 8.053 34.087 1 69.46 ? C1 DMS 902 A 1 
HETATM 4 C C2 DMS . . . F 3 -11.258 7.038 31.626 1 42.43 ? C2 DMS 902 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#