data_3K5P
#
_model_server_result.job_id            NnRg9RgOqSurk6IHyhXdDw 
_model_server_result.datetime_utc      '2024-10-19 17:43:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k5p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":416}' 
#
_entry.id    3K5P 
#
_exptl.entry_id    3K5P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3K5P 
_cell.length_a            97.891 
_cell.length_b            97.891 
_cell.length_c            189.215 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K5P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 48.9455 84.776093 0 
3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -63.071667 
4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 48.9455 84.776093 -63.071667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     3K5P 
_atom_sites.fract_transf_matrix[1][1]    0.010215 
_atom_sites.fract_transf_matrix[1][2]    0.005898 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 413 413 EDO EDO . 
C 3 GOL A 1 414 414 GOL GOL . 
D 3 GOL A 1 415 415 GOL GOL . 
E 3 GOL A 1 416 416 GOL GOL . 
F 4 HOH A 1 417 1 HOH HOH . 
F 4 HOH A 2 418 2 HOH HOH . 
F 4 HOH A 3 419 3 HOH HOH . 
F 4 HOH A 4 420 4 HOH HOH . 
F 4 HOH A 5 421 5 HOH HOH . 
F 4 HOH A 6 422 6 HOH HOH . 
F 4 HOH A 7 423 7 HOH HOH . 
F 4 HOH A 8 424 8 HOH HOH . 
F 4 HOH A 9 425 9 HOH HOH . 
F 4 HOH A 10 426 10 HOH HOH . 
F 4 HOH A 11 427 11 HOH HOH . 
F 4 HOH A 12 428 12 HOH HOH . 
F 4 HOH A 13 429 13 HOH HOH . 
F 4 HOH A 14 430 14 HOH HOH . 
F 4 HOH A 15 431 15 HOH HOH . 
F 4 HOH A 16 432 16 HOH HOH . 
F 4 HOH A 17 433 17 HOH HOH . 
F 4 HOH A 18 434 18 HOH HOH . 
F 4 HOH A 19 435 19 HOH HOH . 
F 4 HOH A 20 436 20 HOH HOH . 
F 4 HOH A 21 437 21 HOH HOH . 
F 4 HOH A 22 438 22 HOH HOH . 
F 4 HOH A 23 439 23 HOH HOH . 
F 4 HOH A 24 440 24 HOH HOH . 
F 4 HOH A 25 441 25 HOH HOH . 
F 4 HOH A 26 442 26 HOH HOH . 
F 4 HOH A 27 443 27 HOH HOH . 
F 4 HOH A 28 444 28 HOH HOH . 
F 4 HOH A 29 445 29 HOH HOH . 
F 4 HOH A 30 446 30 HOH HOH . 
F 4 HOH A 31 447 31 HOH HOH . 
F 4 HOH A 32 448 32 HOH HOH . 
F 4 HOH A 33 449 33 HOH HOH . 
F 4 HOH A 34 450 34 HOH HOH . 
F 4 HOH A 35 451 35 HOH HOH . 
F 4 HOH A 36 452 36 HOH HOH . 
F 4 HOH A 37 453 37 HOH HOH . 
F 4 HOH A 38 454 38 HOH HOH . 
F 4 HOH A 39 455 39 HOH HOH . 
F 4 HOH A 40 456 40 HOH HOH . 
F 4 HOH A 41 457 41 HOH HOH . 
F 4 HOH A 42 458 42 HOH HOH . 
F 4 HOH A 43 459 43 HOH HOH . 
F 4 HOH A 44 460 44 HOH HOH . 
F 4 HOH A 45 461 45 HOH HOH . 
F 4 HOH A 46 462 46 HOH HOH . 
F 4 HOH A 47 463 47 HOH HOH . 
F 4 HOH A 48 464 48 HOH HOH . 
F 4 HOH A 49 465 49 HOH HOH . 
F 4 HOH A 50 466 50 HOH HOH . 
F 4 HOH A 51 467 51 HOH HOH . 
F 4 HOH A 52 468 52 HOH HOH . 
F 4 HOH A 53 469 53 HOH HOH . 
F 4 HOH A 54 470 54 HOH HOH . 
F 4 HOH A 55 471 55 HOH HOH . 
F 4 HOH A 56 472 56 HOH HOH . 
F 4 HOH A 57 473 57 HOH HOH . 
F 4 HOH A 58 474 58 HOH HOH . 
F 4 HOH A 59 475 59 HOH HOH . 
F 4 HOH A 60 476 60 HOH HOH . 
F 4 HOH A 61 477 61 HOH HOH . 
F 4 HOH A 62 478 62 HOH HOH . 
F 4 HOH A 63 479 63 HOH HOH . 
F 4 HOH A 64 480 64 HOH HOH . 
F 4 HOH A 65 481 65 HOH HOH . 
F 4 HOH A 66 482 66 HOH HOH . 
F 4 HOH A 67 483 67 HOH HOH . 
F 4 HOH A 68 484 68 HOH HOH . 
F 4 HOH A 69 485 69 HOH HOH . 
F 4 HOH A 70 486 70 HOH HOH . 
F 4 HOH A 71 487 71 HOH HOH . 
F 4 HOH A 72 488 72 HOH HOH . 
F 4 HOH A 73 489 73 HOH HOH . 
F 4 HOH A 74 490 74 HOH HOH . 
F 4 HOH A 75 491 75 HOH HOH . 
F 4 HOH A 76 492 76 HOH HOH . 
F 4 HOH A 77 493 77 HOH HOH . 
F 4 HOH A 78 494 78 HOH HOH . 
F 4 HOH A 79 495 79 HOH HOH . 
F 4 HOH A 80 496 80 HOH HOH . 
F 4 HOH A 81 497 81 HOH HOH . 
F 4 HOH A 82 498 82 HOH HOH . 
F 4 HOH A 83 499 83 HOH HOH . 
F 4 HOH A 84 500 84 HOH HOH . 
F 4 HOH A 85 501 85 HOH HOH . 
F 4 HOH A 86 502 86 HOH HOH . 
F 4 HOH A 87 503 87 HOH HOH . 
F 4 HOH A 88 504 88 HOH HOH . 
F 4 HOH A 89 505 89 HOH HOH . 
F 4 HOH A 90 506 90 HOH HOH . 
F 4 HOH A 91 507 91 HOH HOH . 
F 4 HOH A 92 508 92 HOH HOH . 
F 4 HOH A 93 509 93 HOH HOH . 
F 4 HOH A 94 510 94 HOH HOH . 
F 4 HOH A 95 511 95 HOH HOH . 
F 4 HOH A 96 512 96 HOH HOH . 
F 4 HOH A 97 513 97 HOH HOH . 
F 4 HOH A 98 514 98 HOH HOH . 
F 4 HOH A 99 515 99 HOH HOH . 
F 4 HOH A 100 516 100 HOH HOH . 
F 4 HOH A 101 517 101 HOH HOH . 
F 4 HOH A 102 518 102 HOH HOH . 
F 4 HOH A 103 519 103 HOH HOH . 
F 4 HOH A 104 520 104 HOH HOH . 
F 4 HOH A 105 521 105 HOH HOH . 
F 4 HOH A 106 522 106 HOH HOH . 
F 4 HOH A 107 523 107 HOH HOH . 
F 4 HOH A 108 524 108 HOH HOH . 
F 4 HOH A 109 525 109 HOH HOH . 
F 4 HOH A 110 526 110 HOH HOH . 
F 4 HOH A 111 527 111 HOH HOH . 
F 4 HOH A 112 528 112 HOH HOH . 
F 4 HOH A 113 529 113 HOH HOH . 
F 4 HOH A 114 530 114 HOH HOH . 
F 4 HOH A 115 531 115 HOH HOH . 
F 4 HOH A 116 532 116 HOH HOH . 
F 4 HOH A 117 533 117 HOH HOH . 
F 4 HOH A 118 534 118 HOH HOH . 
F 4 HOH A 119 535 119 HOH HOH . 
F 4 HOH A 120 536 120 HOH HOH . 
F 4 HOH A 121 537 121 HOH HOH . 
F 4 HOH A 122 538 122 HOH HOH . 
F 4 HOH A 123 539 123 HOH HOH . 
F 4 HOH A 124 540 124 HOH HOH . 
F 4 HOH A 125 541 125 HOH HOH . 
F 4 HOH A 126 542 126 HOH HOH . 
F 4 HOH A 127 543 127 HOH HOH . 
F 4 HOH A 128 544 128 HOH HOH . 
F 4 HOH A 129 545 129 HOH HOH . 
F 4 HOH A 130 546 130 HOH HOH . 
F 4 HOH A 131 547 131 HOH HOH . 
F 4 HOH A 132 548 132 HOH HOH . 
F 4 HOH A 133 549 133 HOH HOH . 
F 4 HOH A 134 550 134 HOH HOH . 
F 4 HOH A 135 551 135 HOH HOH . 
F 4 HOH A 136 552 136 HOH HOH . 
F 4 HOH A 137 553 137 HOH HOH . 
F 4 HOH A 138 554 138 HOH HOH . 
F 4 HOH A 139 555 139 HOH HOH . 
F 4 HOH A 140 556 140 HOH HOH . 
F 4 HOH A 141 557 141 HOH HOH . 
F 4 HOH A 142 558 142 HOH HOH . 
F 4 HOH A 143 559 143 HOH HOH . 
F 4 HOH A 144 560 144 HOH HOH . 
F 4 HOH A 145 561 145 HOH HOH . 
F 4 HOH A 146 562 146 HOH HOH . 
F 4 HOH A 147 563 147 HOH HOH . 
F 4 HOH A 148 564 148 HOH HOH . 
F 4 HOH A 149 565 149 HOH HOH . 
F 4 HOH A 150 566 150 HOH HOH . 
F 4 HOH A 151 567 151 HOH HOH . 
F 4 HOH A 152 568 152 HOH HOH . 
F 4 HOH A 153 569 153 HOH HOH . 
F 4 HOH A 154 570 154 HOH HOH . 
F 4 HOH A 155 571 155 HOH HOH . 
F 4 HOH A 156 572 156 HOH HOH . 
F 4 HOH A 157 573 157 HOH HOH . 
F 4 HOH A 158 574 158 HOH HOH . 
F 4 HOH A 159 575 159 HOH HOH . 
F 4 HOH A 160 576 160 HOH HOH . 
F 4 HOH A 161 577 161 HOH HOH . 
F 4 HOH A 162 578 162 HOH HOH . 
F 4 HOH A 163 579 163 HOH HOH . 
F 4 HOH A 164 580 164 HOH HOH . 
F 4 HOH A 165 581 165 HOH HOH . 
F 4 HOH A 166 582 166 HOH HOH . 
F 4 HOH A 167 583 167 HOH HOH . 
F 4 HOH A 168 584 168 HOH HOH . 
F 4 HOH A 169 585 169 HOH HOH . 
F 4 HOH A 170 586 170 HOH HOH . 
F 4 HOH A 171 587 171 HOH HOH . 
F 4 HOH A 172 588 172 HOH HOH . 
F 4 HOH A 173 589 173 HOH HOH . 
F 4 HOH A 174 590 174 HOH HOH . 
F 4 HOH A 175 591 175 HOH HOH . 
F 4 HOH A 176 592 176 HOH HOH . 
F 4 HOH A 177 593 177 HOH HOH . 
F 4 HOH A 178 594 178 HOH HOH . 
F 4 HOH A 179 595 179 HOH HOH . 
F 4 HOH A 180 596 180 HOH HOH . 
F 4 HOH A 181 597 181 HOH HOH . 
F 4 HOH A 182 598 182 HOH HOH . 
F 4 HOH A 183 599 183 HOH HOH . 
F 4 HOH A 184 600 184 HOH HOH . 
F 4 HOH A 185 601 185 HOH HOH . 
F 4 HOH A 186 602 186 HOH HOH . 
F 4 HOH A 187 603 187 HOH HOH . 
F 4 HOH A 188 604 188 HOH HOH . 
F 4 HOH A 189 605 189 HOH HOH . 
F 4 HOH A 190 606 190 HOH HOH . 
F 4 HOH A 191 607 191 HOH HOH . 
F 4 HOH A 192 608 192 HOH HOH . 
F 4 HOH A 193 609 193 HOH HOH . 
F 4 HOH A 194 610 194 HOH HOH . 
F 4 HOH A 195 611 195 HOH HOH . 
F 4 HOH A 196 612 196 HOH HOH . 
F 4 HOH A 197 613 197 HOH HOH . 
F 4 HOH A 198 614 198 HOH HOH . 
F 4 HOH A 199 615 199 HOH HOH . 
F 4 HOH A 200 616 200 HOH HOH . 
F 4 HOH A 201 617 201 HOH HOH . 
F 4 HOH A 202 618 202 HOH HOH . 
F 4 HOH A 203 619 203 HOH HOH . 
F 4 HOH A 204 620 204 HOH HOH . 
F 4 HOH A 205 621 205 HOH HOH . 
F 4 HOH A 206 622 206 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 38.852 36.72 9.642 1 47.03 ? C1 GOL 416 A 1 
HETATM 2 O O1 GOL . . . E 3 37.449 36.764 9.78 1 43.84 ? O1 GOL 416 A 1 
HETATM 3 C C2 GOL . . . E 3 39.636 37.159 10.862 1 47.23 ? C2 GOL 416 A 1 
HETATM 4 O O2 GOL . . . E 3 38.829 37.777 11.859 1 44.88 ? O2 GOL 416 A 1 
HETATM 5 C C3 GOL . . . E 3 40.492 36.004 11.37 1 49.97 ? C3 GOL 416 A 1 
HETATM 6 O O3 GOL . . . E 3 41.844 36.137 10.977 1 51.14 ? O3 GOL 416 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#