data_3K65 # _model_server_result.job_id '_vITytSyuF-H0c1n1-xa6g' _model_server_result.datetime_utc '2024-12-27 00:56:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 3K65 # _exptl.entry_id 3K65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K65 _cell.length_a 73.53 _cell.length_b 73.53 _cell.length_c 205.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 170 1_555 A SG CYS 93 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 36 A CYS 191 1_555 A SG CYS 76 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 64 A CYS 219 1_555 A SG CYS 88 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 22 B CYS 293 1_555 B SG CYS 168 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 77 B CYS 348 1_555 B SG CYS 93 B CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 222 B CYS 493 1_555 B SG CYS 236 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 70 n n C1 O5 BU1 sing 71 n n C1 H11 BU1 sing 72 n n C1 H12 BU1 sing 73 n n C2 C3 BU1 sing 74 n n C2 H21 BU1 sing 75 n n C2 H22 BU1 sing 76 n n C3 C4 BU1 sing 77 n n C3 H31 BU1 sing 78 n n C3 H32 BU1 sing 79 n n C4 O6 BU1 sing 80 n n C4 H41 BU1 sing 81 n n C4 H42 BU1 sing 82 n n O5 HO5 BU1 sing 83 n n O6 HO6 BU1 sing 84 n n # _atom_sites.entry_id 3K65 _atom_sites.fract_transf_matrix[1][1] 0.0136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BU1 A 1 599 599 BU1 BU1 . D 3 BU1 A 1 600 600 BU1 BU1 . E 4 HOH A 1 604 604 HOH HOH . E 4 HOH A 2 609 609 HOH HOH . E 4 HOH A 3 610 610 HOH HOH . E 4 HOH A 4 613 613 HOH HOH . E 4 HOH A 5 614 614 HOH HOH . E 4 HOH A 6 620 620 HOH HOH . E 4 HOH A 7 624 624 HOH HOH . E 4 HOH A 8 628 628 HOH HOH . E 4 HOH A 9 630 630 HOH HOH . E 4 HOH A 10 631 631 HOH HOH . E 4 HOH A 11 634 634 HOH HOH . E 4 HOH A 12 636 636 HOH HOH . E 4 HOH A 13 638 638 HOH HOH . E 4 HOH A 14 641 641 HOH HOH . E 4 HOH A 15 649 649 HOH HOH . E 4 HOH A 16 652 652 HOH HOH . E 4 HOH A 17 654 654 HOH HOH . E 4 HOH A 18 655 655 HOH HOH . E 4 HOH A 19 659 659 HOH HOH . E 4 HOH A 20 660 660 HOH HOH . E 4 HOH A 21 663 663 HOH HOH . E 4 HOH A 22 673 673 HOH HOH . E 4 HOH A 23 674 674 HOH HOH . E 4 HOH A 24 676 676 HOH HOH . E 4 HOH A 25 678 678 HOH HOH . E 4 HOH A 26 679 679 HOH HOH . E 4 HOH A 27 681 681 HOH HOH . E 4 HOH A 28 682 682 HOH HOH . E 4 HOH A 29 686 686 HOH HOH . E 4 HOH A 30 693 693 HOH HOH . E 4 HOH A 31 695 695 HOH HOH . E 4 HOH A 32 699 699 HOH HOH . E 4 HOH A 33 700 700 HOH HOH . E 4 HOH A 34 701 701 HOH HOH . E 4 HOH A 35 703 703 HOH HOH . E 4 HOH A 36 706 706 HOH HOH . E 4 HOH A 37 715 715 HOH HOH . E 4 HOH A 38 718 718 HOH HOH . E 4 HOH A 39 719 719 HOH HOH . E 4 HOH A 40 720 720 HOH HOH . E 4 HOH A 41 721 721 HOH HOH . E 4 HOH A 42 722 722 HOH HOH . E 4 HOH A 43 724 724 HOH HOH . E 4 HOH A 44 729 729 HOH HOH . E 4 HOH A 45 737 737 HOH HOH . E 4 HOH A 46 738 738 HOH HOH . E 4 HOH A 47 739 739 HOH HOH . E 4 HOH A 48 740 740 HOH HOH . E 4 HOH A 49 741 741 HOH HOH . E 4 HOH A 50 742 742 HOH HOH . E 4 HOH A 51 743 743 HOH HOH . E 4 HOH A 52 744 744 HOH HOH . E 4 HOH A 53 745 745 HOH HOH . E 4 HOH A 54 746 746 HOH HOH . E 4 HOH A 55 747 747 HOH HOH . E 4 HOH A 56 748 748 HOH HOH . E 4 HOH A 57 749 749 HOH HOH . E 4 HOH A 58 765 765 HOH HOH . E 4 HOH A 59 770 770 HOH HOH . E 4 HOH A 60 771 771 HOH HOH . E 4 HOH A 61 774 774 HOH HOH . E 4 HOH A 62 775 775 HOH HOH . E 4 HOH A 63 776 776 HOH HOH . E 4 HOH A 64 783 783 HOH HOH . E 4 HOH A 65 784 784 HOH HOH . E 4 HOH A 66 785 785 HOH HOH . E 4 HOH A 67 802 802 HOH HOH . E 4 HOH A 68 815 815 HOH HOH . E 4 HOH A 69 816 816 HOH HOH . E 4 HOH A 70 817 817 HOH HOH . E 4 HOH A 71 818 818 HOH HOH . E 4 HOH A 72 819 819 HOH HOH . E 4 HOH A 73 843 843 HOH HOH . E 4 HOH A 74 846 846 HOH HOH . E 4 HOH A 75 848 848 HOH HOH . E 4 HOH A 76 849 849 HOH HOH . E 4 HOH A 77 850 850 HOH HOH . E 4 HOH A 78 851 851 HOH HOH . E 4 HOH A 79 852 852 HOH HOH . E 4 HOH A 80 853 853 HOH HOH . E 4 HOH A 81 863 863 HOH HOH . E 4 HOH A 82 864 864 HOH HOH . E 4 HOH A 83 865 865 HOH HOH . E 4 HOH A 84 866 866 HOH HOH . F 4 HOH B 1 601 601 HOH HOH . F 4 HOH B 2 602 602 HOH HOH . F 4 HOH B 3 603 603 HOH HOH . F 4 HOH B 4 605 605 HOH HOH . F 4 HOH B 5 606 606 HOH HOH . F 4 HOH B 6 607 607 HOH HOH . F 4 HOH B 7 608 608 HOH HOH . F 4 HOH B 8 611 611 HOH HOH . F 4 HOH B 9 612 612 HOH HOH . F 4 HOH B 10 615 615 HOH HOH . F 4 HOH B 11 616 616 HOH HOH . F 4 HOH B 12 617 617 HOH HOH . F 4 HOH B 13 618 618 HOH HOH . F 4 HOH B 14 619 619 HOH HOH . F 4 HOH B 15 621 621 HOH HOH . F 4 HOH B 16 622 622 HOH HOH . F 4 HOH B 17 623 623 HOH HOH . F 4 HOH B 18 625 625 HOH HOH . F 4 HOH B 19 626 626 HOH HOH . F 4 HOH B 20 627 627 HOH HOH . F 4 HOH B 21 629 629 HOH HOH . F 4 HOH B 22 632 632 HOH HOH . F 4 HOH B 23 633 633 HOH HOH . F 4 HOH B 24 635 635 HOH HOH . F 4 HOH B 25 637 637 HOH HOH . F 4 HOH B 26 639 639 HOH HOH . F 4 HOH B 27 640 640 HOH HOH . F 4 HOH B 28 642 642 HOH HOH . F 4 HOH B 29 643 643 HOH HOH . F 4 HOH B 30 644 644 HOH HOH . F 4 HOH B 31 645 645 HOH HOH . F 4 HOH B 32 646 646 HOH HOH . F 4 HOH B 33 647 647 HOH HOH . F 4 HOH B 34 648 648 HOH HOH . F 4 HOH B 35 650 650 HOH HOH . F 4 HOH B 36 651 651 HOH HOH . F 4 HOH B 37 653 653 HOH HOH . F 4 HOH B 38 656 656 HOH HOH . F 4 HOH B 39 657 657 HOH HOH . F 4 HOH B 40 658 658 HOH HOH . F 4 HOH B 41 661 661 HOH HOH . F 4 HOH B 42 662 662 HOH HOH . F 4 HOH B 43 664 664 HOH HOH . F 4 HOH B 44 665 665 HOH HOH . F 4 HOH B 45 666 666 HOH HOH . F 4 HOH B 46 667 667 HOH HOH . F 4 HOH B 47 668 668 HOH HOH . F 4 HOH B 48 669 669 HOH HOH . F 4 HOH B 49 670 670 HOH HOH . F 4 HOH B 50 671 671 HOH HOH . F 4 HOH B 51 672 672 HOH HOH . F 4 HOH B 52 675 675 HOH HOH . F 4 HOH B 53 677 677 HOH HOH . F 4 HOH B 54 680 680 HOH HOH . F 4 HOH B 55 683 683 HOH HOH . F 4 HOH B 56 684 684 HOH HOH . F 4 HOH B 57 685 685 HOH HOH . F 4 HOH B 58 687 687 HOH HOH . F 4 HOH B 59 688 688 HOH HOH . F 4 HOH B 60 689 689 HOH HOH . F 4 HOH B 61 690 690 HOH HOH . F 4 HOH B 62 691 691 HOH HOH . F 4 HOH B 63 692 692 HOH HOH . F 4 HOH B 64 694 694 HOH HOH . F 4 HOH B 65 696 696 HOH HOH . F 4 HOH B 66 697 697 HOH HOH . F 4 HOH B 67 698 698 HOH HOH . F 4 HOH B 68 702 702 HOH HOH . F 4 HOH B 69 704 704 HOH HOH . F 4 HOH B 70 705 705 HOH HOH . F 4 HOH B 71 707 707 HOH HOH . F 4 HOH B 72 708 708 HOH HOH . F 4 HOH B 73 709 709 HOH HOH . F 4 HOH B 74 710 710 HOH HOH . F 4 HOH B 75 711 711 HOH HOH . F 4 HOH B 76 712 712 HOH HOH . F 4 HOH B 77 713 713 HOH HOH . F 4 HOH B 78 714 714 HOH HOH . F 4 HOH B 79 716 716 HOH HOH . F 4 HOH B 80 717 717 HOH HOH . F 4 HOH B 81 723 723 HOH HOH . F 4 HOH B 82 725 725 HOH HOH . F 4 HOH B 83 726 726 HOH HOH . F 4 HOH B 84 727 727 HOH HOH . F 4 HOH B 85 728 728 HOH HOH . F 4 HOH B 86 730 730 HOH HOH . F 4 HOH B 87 731 731 HOH HOH . F 4 HOH B 88 732 732 HOH HOH . F 4 HOH B 89 733 733 HOH HOH . F 4 HOH B 90 734 734 HOH HOH . F 4 HOH B 91 735 735 HOH HOH . F 4 HOH B 92 736 736 HOH HOH . F 4 HOH B 93 750 750 HOH HOH . F 4 HOH B 94 751 751 HOH HOH . F 4 HOH B 95 752 752 HOH HOH . F 4 HOH B 96 753 753 HOH HOH . F 4 HOH B 97 754 754 HOH HOH . F 4 HOH B 98 755 755 HOH HOH . F 4 HOH B 99 756 756 HOH HOH . F 4 HOH B 100 757 757 HOH HOH . F 4 HOH B 101 758 758 HOH HOH . F 4 HOH B 102 759 759 HOH HOH . F 4 HOH B 103 760 760 HOH HOH . F 4 HOH B 104 761 761 HOH HOH . F 4 HOH B 105 762 762 HOH HOH . F 4 HOH B 106 763 763 HOH HOH . F 4 HOH B 107 764 764 HOH HOH . F 4 HOH B 108 766 766 HOH HOH . F 4 HOH B 109 767 767 HOH HOH . F 4 HOH B 110 768 768 HOH HOH . F 4 HOH B 111 769 769 HOH HOH . F 4 HOH B 112 772 772 HOH HOH . F 4 HOH B 113 773 773 HOH HOH . F 4 HOH B 114 777 777 HOH HOH . F 4 HOH B 115 778 778 HOH HOH . F 4 HOH B 116 779 779 HOH HOH . F 4 HOH B 117 780 780 HOH HOH . F 4 HOH B 118 781 781 HOH HOH . F 4 HOH B 119 782 782 HOH HOH . F 4 HOH B 120 786 786 HOH HOH . F 4 HOH B 121 787 787 HOH HOH . F 4 HOH B 122 788 788 HOH HOH . F 4 HOH B 123 789 789 HOH HOH . F 4 HOH B 124 790 790 HOH HOH . F 4 HOH B 125 791 791 HOH HOH . F 4 HOH B 126 792 792 HOH HOH . F 4 HOH B 127 793 793 HOH HOH . F 4 HOH B 128 794 794 HOH HOH . F 4 HOH B 129 795 795 HOH HOH . F 4 HOH B 130 796 796 HOH HOH . F 4 HOH B 131 797 797 HOH HOH . F 4 HOH B 132 798 798 HOH HOH . F 4 HOH B 133 799 799 HOH HOH . F 4 HOH B 134 800 800 HOH HOH . F 4 HOH B 135 801 801 HOH HOH . F 4 HOH B 136 803 803 HOH HOH . F 4 HOH B 137 804 804 HOH HOH . F 4 HOH B 138 805 805 HOH HOH . F 4 HOH B 139 806 806 HOH HOH . F 4 HOH B 140 807 807 HOH HOH . F 4 HOH B 141 808 808 HOH HOH . F 4 HOH B 142 809 809 HOH HOH . F 4 HOH B 143 810 810 HOH HOH . F 4 HOH B 144 811 811 HOH HOH . F 4 HOH B 145 812 812 HOH HOH . F 4 HOH B 146 813 813 HOH HOH . F 4 HOH B 147 814 814 HOH HOH . F 4 HOH B 148 820 820 HOH HOH . F 4 HOH B 149 821 821 HOH HOH . F 4 HOH B 150 822 822 HOH HOH . F 4 HOH B 151 823 823 HOH HOH . F 4 HOH B 152 824 824 HOH HOH . F 4 HOH B 153 825 825 HOH HOH . F 4 HOH B 154 826 826 HOH HOH . F 4 HOH B 155 827 827 HOH HOH . F 4 HOH B 156 828 828 HOH HOH . F 4 HOH B 157 829 829 HOH HOH . F 4 HOH B 158 830 830 HOH HOH . F 4 HOH B 159 831 831 HOH HOH . F 4 HOH B 160 832 832 HOH HOH . F 4 HOH B 161 833 833 HOH HOH . F 4 HOH B 162 834 834 HOH HOH . F 4 HOH B 163 835 835 HOH HOH . F 4 HOH B 164 836 836 HOH HOH . F 4 HOH B 165 837 837 HOH HOH . F 4 HOH B 166 838 838 HOH HOH . F 4 HOH B 167 839 839 HOH HOH . F 4 HOH B 168 840 840 HOH HOH . F 4 HOH B 169 841 841 HOH HOH . F 4 HOH B 170 842 842 HOH HOH . F 4 HOH B 171 844 844 HOH HOH . F 4 HOH B 172 845 845 HOH HOH . F 4 HOH B 173 847 847 HOH HOH . F 4 HOH B 174 854 854 HOH HOH . F 4 HOH B 175 855 855 HOH HOH . F 4 HOH B 176 856 856 HOH HOH . F 4 HOH B 177 857 857 HOH HOH . F 4 HOH B 178 858 858 HOH HOH . F 4 HOH B 179 859 859 HOH HOH . F 4 HOH B 180 860 860 HOH HOH . F 4 HOH B 181 861 861 HOH HOH . F 4 HOH B 182 862 862 HOH HOH . F 4 HOH B 183 867 867 HOH HOH . F 4 HOH B 184 868 868 HOH HOH . F 4 HOH B 185 869 869 HOH HOH . F 4 HOH B 186 870 870 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . D 3 22.285 6.291 4.628 1 72.77 ? C1 BU1 600 A 1 HETATM 2 C C2 BU1 . . . D 3 22.047 5.83 3.19 1 72.3 ? C2 BU1 600 A 1 HETATM 3 C C3 BU1 . . . D 3 20.877 4.843 3.126 1 73.2 ? C3 BU1 600 A 1 HETATM 4 C C4 BU1 . . . D 3 20.613 4.396 1.686 1 73.97 ? C4 BU1 600 A 1 HETATM 5 O O5 BU1 . . . D 3 23.351 7.243 4.657 1 71.63 ? O5 BU1 600 A 1 HETATM 6 O O6 BU1 . . . D 3 19.481 3.523 1.663 1 74.73 ? O6 BU1 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #