data_3K6B # _model_server_result.job_id JIceijDBA4sSi7SblKBteQ _model_server_result.datetime_utc '2024-11-22 10:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3K6B # _exptl.entry_id 3K6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.409 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3K6B _cell.length_a 97.314 _cell.length_b 97.314 _cell.length_c 67.462 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O18 S4' _chem_comp.formula_weight 500.409 _chem_comp.id GU4 _chem_comp.mon_nstd_flag n _chem_comp.name 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 2,3,4,6-tetra-O-sulfonato-alpha-D-glucose;2,3,4,6-tetra-O-sulfonato-D-glucose;2,3,4,6-tetra-O-sulfonato-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 GU4 sing 116 n n O1 HO1 GU4 sing 117 n n C1 O5 GU4 sing 118 n n C1 C2 GU4 sing 119 n n C1 H1 GU4 sing 120 n n O5 C5 GU4 sing 121 n n C5 C6 GU4 sing 122 n n C5 C4 GU4 sing 123 n n C5 H5 GU4 sing 124 n n C6 O6 GU4 sing 125 n n C6 H61 GU4 sing 126 n n C6 H62 GU4 sing 127 n n O6 S6 GU4 sing 128 n n S6 O22 GU4 doub 129 n n S6 O23 GU4 doub 130 n n S6 O21 GU4 sing 131 n n C4 O4 GU4 sing 132 n n C4 C3 GU4 sing 133 n n C4 H4 GU4 sing 134 n n O4 S4 GU4 sing 135 n n S4 O25 GU4 doub 136 n n S4 O26 GU4 doub 137 n n S4 O24 GU4 sing 138 n n C3 O3 GU4 sing 139 n n C3 C2 GU4 sing 140 n n C3 H3 GU4 sing 141 n n O3 S3 GU4 sing 142 n n S3 O28 GU4 doub 143 n n S3 O29 GU4 sing 144 n n S3 O27 GU4 doub 145 n n C2 O2 GU4 sing 146 n n C2 H2 GU4 sing 147 n n O2 S2 GU4 sing 148 n n S2 O11 GU4 doub 149 n n S2 O12 GU4 doub 150 n n S2 O10 GU4 sing 151 n n O21 HO21 GU4 sing 152 n n O24 HO24 GU4 sing 153 n n O29 HO29 GU4 sing 154 n n O10 HO10 GU4 sing 155 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GU4 DGlcp[2S,3S,4S,6S]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GU4 2-sulfo-3-sulfo-4-sulfo-6-sulfo-a-D-glucopyranose 'COMMON NAME' GMML 1 GU4 a-D-Glcp2SO33SO34SO36SO3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 3K6B _atom_sites.fract_transf_matrix[1][1] 0.010276 _atom_sites.fract_transf_matrix[1][2] 0.005933 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GU4 A 1 501 501 GU4 NT2 . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 16 16 HOH TIP . C 3 HOH A 17 17 17 HOH TIP . C 3 HOH A 18 18 18 HOH TIP . C 3 HOH A 19 19 19 HOH TIP . C 3 HOH A 20 20 20 HOH TIP . C 3 HOH A 21 21 21 HOH TIP . C 3 HOH A 22 22 22 HOH TIP . C 3 HOH A 23 23 23 HOH TIP . C 3 HOH A 24 24 24 HOH TIP . C 3 HOH A 25 25 25 HOH TIP . C 3 HOH A 26 26 26 HOH TIP . C 3 HOH A 27 27 27 HOH TIP . C 3 HOH A 28 28 28 HOH TIP . C 3 HOH A 29 29 29 HOH TIP . C 3 HOH A 30 30 30 HOH TIP . C 3 HOH A 31 31 31 HOH TIP . C 3 HOH A 32 32 32 HOH TIP . C 3 HOH A 33 33 33 HOH TIP . C 3 HOH A 34 34 34 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 GU4 . . . B 2 54.398 27.05 23.623 1 180.72 ? O1 GU4 501 A 1 HETATM 2 C C1 GU4 . . . B 2 53.887 27.907 24.569 1 181.41 ? C1 GU4 501 A 1 HETATM 3 O O5 GU4 . . . B 2 53.247 27.104 25.602 1 181.32 ? O5 GU4 501 A 1 HETATM 4 C C5 GU4 . . . B 2 54.163 26.104 26.12 1 181.75 ? C5 GU4 501 A 1 HETATM 5 C C6 GU4 . . . B 2 53.444 25.34 27.264 1 181.63 ? C6 GU4 501 A 1 HETATM 6 O O6 GU4 . . . B 2 52.868 26.147 28.354 1 181.81 ? O6 GU4 501 A 1 HETATM 7 S S6 GU4 . . . B 2 51.94 25.463 29.366 1 181.5 ? S6 GU4 501 A 1 HETATM 8 O O22 GU4 . . . B 2 50.995 24.536 28.698 1 181.31 ? O22 GU4 501 A 1 HETATM 9 O O23 GU4 . . . B 2 51.07 26.509 29.955 1 181.75 ? O23 GU4 501 A 1 HETATM 10 O O21 GU4 . . . B 2 52.861 24.892 30.414 1 181.85 ? O21 GU4 501 A 1 HETATM 11 C C4 GU4 . . . B 2 55.491 26.74 26.717 1 182.14 ? C4 GU4 501 A 1 HETATM 12 O O4 GU4 . . . B 2 56.456 25.726 27.042 1 182.34 ? O4 GU4 501 A 1 HETATM 13 S S4 GU4 . . . B 2 56.922 25.711 28.481 1 182.73 ? S4 GU4 501 A 1 HETATM 14 O O25 GU4 . . . B 2 57.754 24.459 28.588 1 182.15 ? O25 GU4 501 A 1 HETATM 15 O O26 GU4 . . . B 2 57.742 26.954 28.739 1 182.23 ? O26 GU4 501 A 1 HETATM 16 O O24 GU4 . . . B 2 55.782 25.666 29.488 1 182.42 ? O24 GU4 501 A 1 HETATM 17 C C3 GU4 . . . B 2 56.14 27.799 25.745 1 182.34 ? C3 GU4 501 A 1 HETATM 18 O O3 GU4 . . . B 2 57.163 28.574 26.411 1 183.03 ? O3 GU4 501 A 1 HETATM 19 S S3 GU4 . . . B 2 58.552 28.314 25.829 1 183.78 ? S3 GU4 501 A 1 HETATM 20 O O28 GU4 . . . B 2 58.669 29.09 24.536 1 183 ? O28 GU4 501 A 1 HETATM 21 O O29 GU4 . . . B 2 59.569 28.815 26.797 1 183.12 ? O29 GU4 501 A 1 HETATM 22 O O27 GU4 . . . B 2 58.832 26.837 25.683 1 183.27 ? O27 GU4 501 A 1 HETATM 23 C C2 GU4 . . . B 2 55.063 28.741 25.162 1 182.02 ? C2 GU4 501 A 1 HETATM 24 O O2 GU4 . . . B 2 55.67 29.569 24.183 1 182.22 ? O2 GU4 501 A 1 HETATM 25 S S2 GU4 . . . B 2 55.357 31.017 24.423 1 182.66 ? S2 GU4 501 A 1 HETATM 26 O O11 GU4 . . . B 2 55.878 31.752 23.247 1 182.68 ? O11 GU4 501 A 1 HETATM 27 O O12 GU4 . . . B 2 53.886 31.253 24.323 1 181.65 ? O12 GU4 501 A 1 HETATM 28 O O10 GU4 . . . B 2 56.089 31.354 25.707 1 182.5 ? O10 GU4 501 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #