data_3K6L # _model_server_result.job_id WW7coRrUCWYTOPTjZKZpGQ _model_server_result.datetime_utc '2024-10-19 19:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":169}' # _entry.id 3K6L # _exptl.entry_id 3K6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K6L _cell.length_a 73.96 _cell.length_b 73.96 _cell.length_c 241.5 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 133 A HIS 132 1_555 D NI NI . A NI 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc2 A NE2 HIS 137 A HIS 136 1_555 D NI NI . A NI 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 D NI NI . A NI 169 1_555 E O2 2BB . A 2BB 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 D NI NI . A NI 169 1_555 E O3 2BB . A 2BB 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 B NE2 HIS 133 B HIS 132 1_555 F NI NI . B NI 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc6 B NE2 HIS 137 B HIS 136 1_555 F NI NI . B NI 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc7 F NI NI . B NI 169 1_555 G O3 2BB . B 2BB 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc8 C NE2 HIS 137 C HIS 136 1_555 H NI NI . C NI 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc9 H NI NI . C NI 169 1_555 K O HOH . C HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K6L _atom_sites.fract_transf_matrix[1][1] 0.013521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NI A 1 169 1 NI NI . E 3 2BB A 1 170 1 2BB BB2 . F 2 NI B 1 169 2 NI NI . G 3 2BB B 1 170 2 2BB BB2 . H 2 NI C 1 169 3 NI NI . I 4 HOH A 1 171 2 HOH HOH . I 4 HOH A 2 172 4 HOH HOH . I 4 HOH A 3 173 5 HOH HOH . I 4 HOH A 4 174 174 HOH HOH . I 4 HOH A 5 175 6 HOH HOH . I 4 HOH A 6 176 7 HOH HOH . I 4 HOH A 7 177 8 HOH HOH . I 4 HOH A 8 178 10 HOH HOH . I 4 HOH A 9 179 14 HOH HOH . I 4 HOH A 10 180 180 HOH HOH . I 4 HOH A 11 181 181 HOH HOH . I 4 HOH A 12 182 15 HOH HOH . I 4 HOH A 13 183 16 HOH HOH . I 4 HOH A 14 184 18 HOH HOH . I 4 HOH A 15 185 19 HOH HOH . I 4 HOH A 16 186 21 HOH HOH . I 4 HOH A 17 187 187 HOH HOH . I 4 HOH A 18 188 22 HOH HOH . I 4 HOH A 19 189 23 HOH HOH . I 4 HOH A 20 190 28 HOH HOH . I 4 HOH A 21 191 191 HOH HOH . I 4 HOH A 22 192 192 HOH HOH . I 4 HOH A 23 193 35 HOH HOH . I 4 HOH A 24 194 194 HOH HOH . I 4 HOH A 25 195 39 HOH HOH . I 4 HOH A 26 196 196 HOH HOH . I 4 HOH A 27 197 42 HOH HOH . I 4 HOH A 28 198 43 HOH HOH . I 4 HOH A 29 199 199 HOH HOH . I 4 HOH A 30 200 44 HOH HOH . I 4 HOH A 31 201 45 HOH HOH . I 4 HOH A 32 202 46 HOH HOH . I 4 HOH A 33 203 47 HOH HOH . I 4 HOH A 34 204 204 HOH HOH . I 4 HOH A 35 205 205 HOH HOH . I 4 HOH A 36 206 49 HOH HOH . I 4 HOH A 37 207 55 HOH HOH . I 4 HOH A 38 208 56 HOH HOH . I 4 HOH A 39 209 209 HOH HOH . I 4 HOH A 40 210 59 HOH HOH . I 4 HOH A 41 211 211 HOH HOH . I 4 HOH A 42 212 212 HOH HOH . I 4 HOH A 43 213 60 HOH HOH . I 4 HOH A 44 214 61 HOH HOH . I 4 HOH A 45 215 215 HOH HOH . I 4 HOH A 46 216 216 HOH HOH . I 4 HOH A 47 217 217 HOH HOH . I 4 HOH A 48 218 218 HOH HOH . I 4 HOH A 49 219 62 HOH HOH . I 4 HOH A 50 220 220 HOH HOH . I 4 HOH A 51 221 64 HOH HOH . I 4 HOH A 52 222 65 HOH HOH . I 4 HOH A 53 223 66 HOH HOH . I 4 HOH A 54 224 68 HOH HOH . I 4 HOH A 55 225 70 HOH HOH . I 4 HOH A 56 226 73 HOH HOH . I 4 HOH A 57 227 75 HOH HOH . I 4 HOH A 58 228 76 HOH HOH . I 4 HOH A 59 229 77 HOH HOH . I 4 HOH A 60 230 81 HOH HOH . I 4 HOH A 61 231 82 HOH HOH . I 4 HOH A 62 232 85 HOH HOH . I 4 HOH A 63 233 87 HOH HOH . I 4 HOH A 64 234 88 HOH HOH . I 4 HOH A 65 235 89 HOH HOH . I 4 HOH A 66 236 90 HOH HOH . I 4 HOH A 67 237 97 HOH HOH . I 4 HOH A 68 238 238 HOH HOH . I 4 HOH A 69 239 98 HOH HOH . I 4 HOH A 70 240 101 HOH HOH . I 4 HOH A 71 241 241 HOH HOH . I 4 HOH A 72 242 242 HOH HOH . I 4 HOH A 73 243 243 HOH HOH . I 4 HOH A 74 244 244 HOH HOH . I 4 HOH A 75 245 245 HOH HOH . I 4 HOH A 76 246 246 HOH HOH . I 4 HOH A 77 247 247 HOH HOH . I 4 HOH A 78 248 248 HOH HOH . I 4 HOH A 79 249 102 HOH HOH . I 4 HOH A 80 250 103 HOH HOH . I 4 HOH A 81 251 104 HOH HOH . I 4 HOH A 82 252 105 HOH HOH . I 4 HOH A 83 253 106 HOH HOH . I 4 HOH A 84 254 107 HOH HOH . I 4 HOH A 85 255 109 HOH HOH . I 4 HOH A 86 256 256 HOH HOH . I 4 HOH A 87 257 257 HOH HOH . I 4 HOH A 88 258 115 HOH HOH . I 4 HOH A 89 259 117 HOH HOH . I 4 HOH A 90 260 260 HOH HOH . I 4 HOH A 91 261 261 HOH HOH . I 4 HOH A 92 262 262 HOH HOH . I 4 HOH A 93 263 121 HOH HOH . I 4 HOH A 94 264 264 HOH HOH . I 4 HOH A 95 265 123 HOH HOH . I 4 HOH A 96 266 124 HOH HOH . I 4 HOH A 97 267 126 HOH HOH . I 4 HOH A 98 268 128 HOH HOH . I 4 HOH A 99 269 130 HOH HOH . I 4 HOH A 100 270 131 HOH HOH . I 4 HOH A 101 271 132 HOH HOH . I 4 HOH A 102 272 133 HOH HOH . I 4 HOH A 103 273 134 HOH HOH . I 4 HOH A 104 274 135 HOH HOH . I 4 HOH A 105 275 136 HOH HOH . I 4 HOH A 106 276 144 HOH HOH . I 4 HOH A 107 277 145 HOH HOH . I 4 HOH A 108 278 146 HOH HOH . I 4 HOH A 109 279 148 HOH HOH . I 4 HOH A 110 280 150 HOH HOH . I 4 HOH A 111 281 151 HOH HOH . I 4 HOH A 112 282 154 HOH HOH . I 4 HOH A 113 283 156 HOH HOH . I 4 HOH A 114 284 158 HOH HOH . I 4 HOH A 115 285 162 HOH HOH . I 4 HOH A 116 286 163 HOH HOH . I 4 HOH A 117 287 164 HOH HOH . I 4 HOH A 118 288 165 HOH HOH . I 4 HOH A 119 289 167 HOH HOH . I 4 HOH A 120 290 169 HOH HOH . J 4 HOH B 1 171 1 HOH HOH . J 4 HOH B 2 172 11 HOH HOH . J 4 HOH B 3 173 12 HOH HOH . J 4 HOH B 4 174 13 HOH HOH . J 4 HOH B 5 175 17 HOH HOH . J 4 HOH B 6 176 176 HOH HOH . J 4 HOH B 7 177 177 HOH HOH . J 4 HOH B 8 178 178 HOH HOH . J 4 HOH B 9 179 25 HOH HOH . J 4 HOH B 10 180 30 HOH HOH . J 4 HOH B 11 181 31 HOH HOH . J 4 HOH B 12 182 32 HOH HOH . J 4 HOH B 13 183 183 HOH HOH . J 4 HOH B 14 184 184 HOH HOH . J 4 HOH B 15 185 185 HOH HOH . J 4 HOH B 16 186 33 HOH HOH . J 4 HOH B 17 187 36 HOH HOH . J 4 HOH B 18 188 188 HOH HOH . J 4 HOH B 19 189 189 HOH HOH . J 4 HOH B 20 190 190 HOH HOH . J 4 HOH B 21 191 38 HOH HOH . J 4 HOH B 22 192 48 HOH HOH . J 4 HOH B 23 193 50 HOH HOH . J 4 HOH B 24 194 51 HOH HOH . J 4 HOH B 25 195 195 HOH HOH . J 4 HOH B 26 196 52 HOH HOH . J 4 HOH B 27 197 53 HOH HOH . J 4 HOH B 28 198 54 HOH HOH . J 4 HOH B 29 199 74 HOH HOH . J 4 HOH B 30 200 78 HOH HOH . J 4 HOH B 31 201 201 HOH HOH . J 4 HOH B 32 202 202 HOH HOH . J 4 HOH B 33 203 203 HOH HOH . J 4 HOH B 34 204 79 HOH HOH . J 4 HOH B 35 205 80 HOH HOH . J 4 HOH B 36 206 83 HOH HOH . J 4 HOH B 37 207 84 HOH HOH . J 4 HOH B 38 208 91 HOH HOH . J 4 HOH B 39 209 110 HOH HOH . J 4 HOH B 40 210 210 HOH HOH . J 4 HOH B 41 211 116 HOH HOH . J 4 HOH B 42 212 120 HOH HOH . J 4 HOH B 43 213 122 HOH HOH . J 4 HOH B 44 214 125 HOH HOH . J 4 HOH B 45 215 137 HOH HOH . J 4 HOH B 46 216 141 HOH HOH . J 4 HOH B 47 217 143 HOH HOH . J 4 HOH B 48 218 147 HOH HOH . J 4 HOH B 49 219 219 HOH HOH . J 4 HOH B 50 220 152 HOH HOH . J 4 HOH B 51 221 155 HOH HOH . J 4 HOH B 52 222 222 HOH HOH . J 4 HOH B 53 223 157 HOH HOH . J 4 HOH B 54 224 160 HOH HOH . J 4 HOH B 55 225 161 HOH HOH . J 4 HOH B 56 226 226 HOH HOH . J 4 HOH B 57 227 227 HOH HOH . J 4 HOH B 58 228 228 HOH HOH . J 4 HOH B 59 229 229 HOH HOH . J 4 HOH B 60 230 230 HOH HOH . J 4 HOH B 61 231 231 HOH HOH . J 4 HOH B 62 232 166 HOH HOH . J 4 HOH B 63 233 168 HOH HOH . J 4 HOH B 64 234 58 HOH HOH . J 4 HOH B 65 235 235 HOH HOH . J 4 HOH B 66 236 236 HOH HOH . J 4 HOH B 67 239 239 HOH HOH . J 4 HOH B 68 240 240 HOH HOH . J 4 HOH B 69 249 249 HOH HOH . J 4 HOH B 70 250 250 HOH HOH . J 4 HOH B 71 252 252 HOH HOH . J 4 HOH B 72 253 253 HOH HOH . J 4 HOH B 73 255 255 HOH HOH . J 4 HOH B 74 258 258 HOH HOH . J 4 HOH B 75 259 259 HOH HOH . J 4 HOH B 76 263 263 HOH HOH . K 4 HOH C 1 170 170 HOH HOH . K 4 HOH C 2 171 171 HOH HOH . K 4 HOH C 3 172 172 HOH HOH . K 4 HOH C 4 173 24 HOH HOH . K 4 HOH C 5 174 26 HOH HOH . K 4 HOH C 6 175 29 HOH HOH . K 4 HOH C 7 176 34 HOH HOH . K 4 HOH C 8 177 41 HOH HOH . K 4 HOH C 9 178 57 HOH HOH . K 4 HOH C 10 179 179 HOH HOH . K 4 HOH C 11 181 72 HOH HOH . K 4 HOH C 12 182 182 HOH HOH . K 4 HOH C 13 183 93 HOH HOH . K 4 HOH C 14 184 96 HOH HOH . K 4 HOH C 15 185 100 HOH HOH . K 4 HOH C 16 186 186 HOH HOH . K 4 HOH C 17 187 108 HOH HOH . K 4 HOH C 18 188 111 HOH HOH . K 4 HOH C 19 189 113 HOH HOH . K 4 HOH C 20 190 138 HOH HOH . K 4 HOH C 21 191 142 HOH HOH . K 4 HOH C 22 192 149 HOH HOH . K 4 HOH C 23 193 159 HOH HOH . K 4 HOH C 24 197 197 HOH HOH . K 4 HOH C 25 198 198 HOH HOH . K 4 HOH C 26 200 200 HOH HOH . K 4 HOH C 27 206 206 HOH HOH . K 4 HOH C 28 207 207 HOH HOH . K 4 HOH C 29 208 208 HOH HOH . K 4 HOH C 30 221 221 HOH HOH . K 4 HOH C 31 223 223 HOH HOH . K 4 HOH C 32 225 225 HOH HOH . K 4 HOH C 33 233 233 HOH HOH . K 4 HOH C 34 234 234 HOH HOH . K 4 HOH C 35 237 237 HOH HOH . K 4 HOH C 36 251 251 HOH HOH . K 4 HOH C 37 254 254 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -34.165 _atom_site.Cartn_y 11.302 _atom_site.Cartn_z -21.496 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 169 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 486 _model_server_stats.encode_time_ms 47 _model_server_stats.element_count 1 #