data_3K7N # _model_server_result.job_id kGbgV4T6kRiY_Y3Sc-HKTQ _model_server_result.datetime_utc '2024-11-06 13:34:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 3K7N # _exptl.entry_id 3K7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K7N _cell.length_a 62.999 _cell.length_b 62.999 _cell.length_c 273.265 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 801 NAG 2 n B NAG 2 B 2 NAG A 802 NAG 2 n B FUC 3 B 3 FUC A 809 FUC 3 n C NAG 1 C 1 NAG A 901 NAG 3 n C NAG 2 C 2 NAG A 902 NAG 3 n C FUL 3 C 3 FUL A 909 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 316 1_555 A SG CYS 199 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? disulf ? disulf2 A SG CYS 160 A CYS 356 1_555 A SG CYS 183 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf3 A SG CYS 162 A CYS 358 1_555 A SG CYS 167 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf4 A SG CYS 215 A CYS 411 1_555 A SG CYS 244 A CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf5 A SG CYS 226 A CYS 422 1_555 A SG CYS 239 A CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? disulf ? disulf6 A SG CYS 228 A CYS 424 1_555 A SG CYS 234 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? disulf ? disulf7 A SG CYS 238 A CYS 434 1_555 A SG CYS 266 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf8 A SG CYS 253 A CYS 449 1_555 A SG CYS 273 A CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf9 A SG CYS 260 A CYS 456 1_555 A SG CYS 292 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? disulf ? disulf10 A SG CYS 285 A CYS 481 1_555 A SG CYS 297 A CYS 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf11 A SG CYS 304 A CYS 500 1_555 A SG CYS 354 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? disulf ? disulf12 A SG CYS 319 A CYS 515 1_555 A SG CYS 362 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf13 A SG CYS 332 A CYS 528 1_555 A SG CYS 342 A CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 A SG CYS 349 A CYS 545 1_555 A SG CYS 385 A CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf15 A SG CYS 379 A CYS 575 1_555 A SG CYS 390 A CYS 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? covale ? covale1 A ND2 ASN 123 A ASN 319 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A ND2 ASN 294 A ASN 490 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale4 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? metalc ? metalc1 H O HOH . A HOH 16 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 H O HOH . A HOH 23 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 H O HOH . A HOH 115 1_555 D ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc4 A OE1 GLU 12 A GLU 208 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 A OD1 ASP 96 A ASP 292 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc6 A OD2 ASP 96 A ASP 292 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc7 A NE2 HIS 149 A HIS 345 1_555 D ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 A NE2 HIS 155 A HIS 351 1_555 D ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 A O CYS 199 A CYS 395 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc10 A ND2 ASN 202 A ASN 398 1_555 E CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc11 A O ILE 214 A ILE 410 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc12 A ND2 ASN 217 A ASN 413 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc13 A O PHE 219 A PHE 415 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc14 A OE1 GLU 221 A GLU 417 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc15 A OE1 GLU 224 A GLU 420 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc16 A OE2 GLU 224 A GLU 420 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc17 A OD2 ASP 227 A ASP 423 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc18 A OD2 ASP 261 A ASP 457 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc19 A O LEU 262 A LEU 458 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc20 A OE1 GLU 264 A GLU 460 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc21 A OE2 GLU 264 A GLU 460 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc22 A OD1 ASP 276 A ASP 472 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc23 A O SER 277 A SER 473 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K7N _atom_sites.fract_transf_matrix[1][1] 0.015873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 704 704 ZN ZN . E 5 CA A 1 701 701 CA CA . F 5 CA A 1 702 702 CA CA . G 5 CA A 1 703 703 CA CA . H 6 HOH A 1 1 1 HOH HOH . H 6 HOH A 2 2 2 HOH HOH . H 6 HOH A 3 3 3 HOH HOH . H 6 HOH A 4 4 4 HOH HOH . H 6 HOH A 5 5 5 HOH HOH . H 6 HOH A 6 6 6 HOH HOH . H 6 HOH A 7 7 7 HOH HOH . H 6 HOH A 8 8 8 HOH HOH . H 6 HOH A 9 9 9 HOH HOH . H 6 HOH A 10 10 10 HOH HOH . H 6 HOH A 11 11 11 HOH HOH . H 6 HOH A 12 12 12 HOH HOH . H 6 HOH A 13 13 13 HOH HOH . H 6 HOH A 14 14 14 HOH HOH . H 6 HOH A 15 15 15 HOH HOH . H 6 HOH A 16 16 16 HOH HOH . H 6 HOH A 17 17 17 HOH HOH . H 6 HOH A 18 18 18 HOH HOH . H 6 HOH A 19 19 19 HOH HOH . H 6 HOH A 20 20 20 HOH HOH . H 6 HOH A 21 21 21 HOH HOH . H 6 HOH A 22 22 22 HOH HOH . H 6 HOH A 23 23 23 HOH HOH . H 6 HOH A 24 24 24 HOH HOH . H 6 HOH A 25 25 25 HOH HOH . H 6 HOH A 26 26 26 HOH HOH . H 6 HOH A 27 27 27 HOH HOH . H 6 HOH A 28 28 28 HOH HOH . H 6 HOH A 29 29 29 HOH HOH . H 6 HOH A 30 30 30 HOH HOH . H 6 HOH A 31 31 31 HOH HOH . H 6 HOH A 32 32 32 HOH HOH . H 6 HOH A 33 33 33 HOH HOH . H 6 HOH A 34 34 34 HOH HOH . H 6 HOH A 35 35 35 HOH HOH . H 6 HOH A 36 36 36 HOH HOH . H 6 HOH A 37 37 37 HOH HOH . H 6 HOH A 38 38 38 HOH HOH . H 6 HOH A 39 39 39 HOH HOH . H 6 HOH A 40 40 40 HOH HOH . H 6 HOH A 41 41 41 HOH HOH . H 6 HOH A 42 42 42 HOH HOH . H 6 HOH A 43 43 43 HOH HOH . H 6 HOH A 44 44 44 HOH HOH . H 6 HOH A 45 45 45 HOH HOH . H 6 HOH A 46 46 46 HOH HOH . H 6 HOH A 47 47 47 HOH HOH . H 6 HOH A 48 48 48 HOH HOH . H 6 HOH A 49 49 49 HOH HOH . H 6 HOH A 50 50 50 HOH HOH . H 6 HOH A 51 51 51 HOH HOH . H 6 HOH A 52 52 52 HOH HOH . H 6 HOH A 53 53 53 HOH HOH . H 6 HOH A 54 54 54 HOH HOH . H 6 HOH A 55 55 55 HOH HOH . H 6 HOH A 56 56 56 HOH HOH . H 6 HOH A 57 57 57 HOH HOH . H 6 HOH A 58 58 58 HOH HOH . H 6 HOH A 59 59 59 HOH HOH . H 6 HOH A 60 60 60 HOH HOH . H 6 HOH A 61 61 61 HOH HOH . H 6 HOH A 62 62 62 HOH HOH . H 6 HOH A 63 63 63 HOH HOH . H 6 HOH A 64 64 64 HOH HOH . H 6 HOH A 65 65 65 HOH HOH . H 6 HOH A 66 66 66 HOH HOH . H 6 HOH A 67 67 67 HOH HOH . H 6 HOH A 68 68 68 HOH HOH . H 6 HOH A 69 69 69 HOH HOH . H 6 HOH A 70 70 70 HOH HOH . H 6 HOH A 71 71 71 HOH HOH . H 6 HOH A 72 72 72 HOH HOH . H 6 HOH A 73 73 73 HOH HOH . H 6 HOH A 74 74 74 HOH HOH . H 6 HOH A 75 75 75 HOH HOH . H 6 HOH A 76 76 76 HOH HOH . H 6 HOH A 77 77 77 HOH HOH . H 6 HOH A 78 78 78 HOH HOH . H 6 HOH A 79 79 79 HOH HOH . H 6 HOH A 80 80 80 HOH HOH . H 6 HOH A 81 81 81 HOH HOH . H 6 HOH A 82 82 82 HOH HOH . H 6 HOH A 83 83 83 HOH HOH . H 6 HOH A 84 84 84 HOH HOH . H 6 HOH A 85 85 85 HOH HOH . H 6 HOH A 86 86 86 HOH HOH . H 6 HOH A 87 87 87 HOH HOH . H 6 HOH A 88 88 88 HOH HOH . H 6 HOH A 89 89 89 HOH HOH . H 6 HOH A 90 90 90 HOH HOH . H 6 HOH A 91 91 91 HOH HOH . H 6 HOH A 92 92 92 HOH HOH . H 6 HOH A 93 93 93 HOH HOH . H 6 HOH A 94 94 94 HOH HOH . H 6 HOH A 95 95 95 HOH HOH . H 6 HOH A 96 96 96 HOH HOH . H 6 HOH A 97 97 97 HOH HOH . H 6 HOH A 98 98 98 HOH HOH . H 6 HOH A 99 99 99 HOH HOH . H 6 HOH A 100 100 100 HOH HOH . H 6 HOH A 101 101 101 HOH HOH . H 6 HOH A 102 102 102 HOH HOH . H 6 HOH A 103 103 103 HOH HOH . H 6 HOH A 104 104 104 HOH HOH . H 6 HOH A 105 105 105 HOH HOH . H 6 HOH A 106 106 106 HOH HOH . H 6 HOH A 107 107 107 HOH HOH . H 6 HOH A 108 108 108 HOH HOH . H 6 HOH A 109 109 109 HOH HOH . H 6 HOH A 110 110 110 HOH HOH . H 6 HOH A 111 111 111 HOH HOH . H 6 HOH A 112 112 112 HOH HOH . H 6 HOH A 113 113 113 HOH HOH . H 6 HOH A 114 114 114 HOH HOH . H 6 HOH A 115 115 115 HOH HOH . H 6 HOH A 116 116 116 HOH HOH . H 6 HOH A 117 117 117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -14.716 _atom_site.Cartn_y -30.369 _atom_site.Cartn_z 32.304 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #