data_3K7T
#
_model_server_result.job_id            PXSdWGgqQFgOW4ewAvMCWg 
_model_server_result.datetime_utc      '2024-11-23 18:41:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k7t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":435}' 
#
_entry.id    3K7T 
#
_exptl.entry_id    3K7T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              673.901 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3K7T 
_cell.length_a            122.957 
_cell.length_b            122.957 
_cell.length_c            199.918 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K7T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C36 H68 N O8 P' 
_chem_comp.formula_weight    673.901 
_chem_comp.id                GP7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-pentadecanoyl-2-hexadecanoyl-sn-glycero-3-phosphoethanolamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P GP7 doub 220 n n 
P O2P GP7 sing 221 n n 
P O3P GP7 sing 222 n n 
P O4P GP7 sing 223 n n 
C1 C2 GP7 sing 224 n n 
C1 O3P GP7 sing 225 n n 
C2 O2 GP7 sing 226 n n 
C2 C3 GP7 sing 227 n n 
O2 C31 GP7 sing 228 n n 
C3 O3 GP7 sing 229 n n 
O3 C11 GP7 sing 230 n n 
C11 O11 GP7 doub 231 n n 
C11 C12 GP7 sing 232 n n 
C12 C13 GP7 sing 233 n n 
C13 C14 GP7 sing 234 n n 
C14 C15 GP7 sing 235 n n 
C15 C16 GP7 sing 236 n n 
C16 C17 GP7 sing 237 n n 
C17 C18 GP7 sing 238 n n 
C18 C19 GP7 sing 239 n n 
C19 C20 GP7 sing 240 n n 
C20 C21 GP7 sing 241 n n 
C21 C22 GP7 sing 242 n n 
C22 C23 GP7 sing 243 n n 
C23 C24 GP7 sing 244 n n 
C24 C25 GP7 sing 245 n n 
C31 O31 GP7 doub 246 n n 
C31 C32 GP7 sing 247 n n 
C32 C33 GP7 sing 248 n n 
C33 C34 GP7 sing 249 n n 
C34 C35 GP7 sing 250 n n 
C35 C36 GP7 sing 251 n n 
C36 C37 GP7 sing 252 n n 
C37 C38 GP7 sing 253 n n 
C38 C39 GP7 sing 254 n n 
C39 C40 GP7 doub 255 n n 
C40 C41 GP7 sing 256 n n 
C41 C42 GP7 sing 257 n n 
C42 C43 GP7 doub 258 n n 
C43 C44 GP7 sing 259 n n 
C44 C45 GP7 sing 260 n n 
C45 C46 GP7 sing 261 n n 
O4P C351 GP7 sing 262 n n 
C351 C361 GP7 sing 263 n n 
C361 N1 GP7 sing 264 n n 
C1 H1 GP7 sing 265 n n 
C1 H1A GP7 sing 266 n n 
C2 H2 GP7 sing 267 n n 
C3 H3 GP7 sing 268 n n 
C3 H3A GP7 sing 269 n n 
C12 H12 GP7 sing 270 n n 
C12 H12A GP7 sing 271 n n 
C13 H13 GP7 sing 272 n n 
C13 H13A GP7 sing 273 n n 
C14 H14 GP7 sing 274 n n 
C14 H14A GP7 sing 275 n n 
C15 H15 GP7 sing 276 n n 
C15 H15A GP7 sing 277 n n 
C16 H16 GP7 sing 278 n n 
C16 H16A GP7 sing 279 n n 
C17 H17 GP7 sing 280 n n 
C17 H17A GP7 sing 281 n n 
C18 H18 GP7 sing 282 n n 
C18 H18A GP7 sing 283 n n 
C19 H19 GP7 sing 284 n n 
C19 H19A GP7 sing 285 n n 
C20 H20 GP7 sing 286 n n 
C20 H20A GP7 sing 287 n n 
C21 H21 GP7 sing 288 n n 
C21 H21A GP7 sing 289 n n 
C22 H22 GP7 sing 290 n n 
C22 H22A GP7 sing 291 n n 
C23 H23 GP7 sing 292 n n 
C23 H23A GP7 sing 293 n n 
C24 H24 GP7 sing 294 n n 
C24 H24A GP7 sing 295 n n 
C25 H25 GP7 sing 296 n n 
C25 H25A GP7 sing 297 n n 
C25 H25B GP7 sing 298 n n 
O2P H351 GP7 sing 299 n n 
C32 H32 GP7 sing 300 n n 
C32 H32A GP7 sing 301 n n 
C33 H33 GP7 sing 302 n n 
C33 H33A GP7 sing 303 n n 
C34 H34 GP7 sing 304 e n 
C34 H34A GP7 sing 305 n n 
C35 H35 GP7 sing 306 n n 
C35 H35A GP7 sing 307 n n 
C36 H36 GP7 sing 308 n n 
C36 H36A GP7 sing 309 n n 
C37 H37 GP7 sing 310 n n 
C37 H37A GP7 sing 311 e n 
C38 H38 GP7 sing 312 n n 
C38 H38A GP7 sing 313 n n 
C39 H39 GP7 sing 314 n n 
C40 H40 GP7 sing 315 n n 
C41 H41 GP7 sing 316 n n 
C41 H41A GP7 sing 317 n n 
C42 H42 GP7 sing 318 n n 
C43 H43 GP7 sing 319 n n 
C44 H44 GP7 sing 320 n n 
C44 H44A GP7 sing 321 n n 
C45 H45 GP7 sing 322 n n 
C45 H45A GP7 sing 323 n n 
C46 H46 GP7 sing 324 n n 
C46 H46A GP7 sing 325 n n 
C46 H46B GP7 sing 326 n n 
C351 H63 GP7 sing 327 n n 
C351 H64 GP7 sing 328 n n 
C361 H65 GP7 sing 329 n n 
C361 H66 GP7 sing 330 n n 
N1 H67 GP7 sing 331 n n 
N1 H68 GP7 sing 332 n n 
#
_atom_sites.entry_id                     3K7T 
_atom_sites.fract_transf_matrix[1][1]    0.008133 
_atom_sites.fract_transf_matrix[1][2]    0.004696 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 434 434 FAD FAD . 
D 3 GP7 A 1 435 435 GP7 GP7 . 
E 2 FAD B 1 434 434 FAD FAD . 
F 3 GP7 B 1 435 435 GP7 GP7 . 
G 4 HOH A 1 505 505 HOH HOH . 
G 4 HOH A 2 509 509 HOH HOH . 
G 4 HOH A 3 511 511 HOH HOH . 
G 4 HOH A 4 515 515 HOH HOH . 
G 4 HOH A 5 517 517 HOH HOH . 
G 4 HOH A 6 520 520 HOH HOH . 
G 4 HOH A 7 521 521 HOH HOH . 
G 4 HOH A 8 524 524 HOH HOH . 
G 4 HOH A 9 526 526 HOH HOH . 
G 4 HOH A 10 527 527 HOH HOH . 
G 4 HOH A 11 533 533 HOH HOH . 
G 4 HOH A 12 534 534 HOH HOH . 
G 4 HOH A 13 540 540 HOH HOH . 
G 4 HOH A 14 541 541 HOH HOH . 
G 4 HOH A 15 542 542 HOH HOH . 
G 4 HOH A 16 543 543 HOH HOH . 
G 4 HOH A 17 544 544 HOH HOH . 
G 4 HOH A 18 547 547 HOH HOH . 
G 4 HOH A 19 552 552 HOH HOH . 
H 4 HOH B 1 500 500 HOH HOH . 
H 4 HOH B 2 501 501 HOH HOH . 
H 4 HOH B 3 504 504 HOH HOH . 
H 4 HOH B 4 506 506 HOH HOH . 
H 4 HOH B 5 508 508 HOH HOH . 
H 4 HOH B 6 510 510 HOH HOH . 
H 4 HOH B 7 514 514 HOH HOH . 
H 4 HOH B 8 516 516 HOH HOH . 
H 4 HOH B 9 518 518 HOH HOH . 
H 4 HOH B 10 519 519 HOH HOH . 
H 4 HOH B 11 528 528 HOH HOH . 
H 4 HOH B 12 529 529 HOH HOH . 
H 4 HOH B 13 530 530 HOH HOH . 
H 4 HOH B 14 531 531 HOH HOH . 
H 4 HOH B 15 536 536 HOH HOH . 
H 4 HOH B 16 538 538 HOH HOH . 
H 4 HOH B 17 545 545 HOH HOH . 
H 4 HOH B 18 546 546 HOH HOH . 
H 4 HOH B 19 548 548 HOH HOH . 
H 4 HOH B 20 549 549 HOH HOH . 
H 4 HOH B 21 550 550 HOH HOH . 
H 4 HOH B 22 551 551 HOH HOH . 
H 4 HOH B 23 553 553 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P GP7 . . . D 3 13.743 88.952 20.482 0.3 83.13 ? P GP7 435 A 1 
HETATM 2 C C1 GP7 . . . D 3 14.99 91.235 21.209 0.5 83.73 ? C1 GP7 435 A 1 
HETATM 3 C C2 GP7 . . . D 3 14.508 91.977 19.961 0.5 83.66 ? C2 GP7 435 A 1 
HETATM 4 O O2 GP7 . . . D 3 15.63 92.246 19.124 0.5 83.85 ? O2 GP7 435 A 1 
HETATM 5 C C3 GP7 . . . D 3 13.75 93.266 20.282 0.5 82.97 ? C3 GP7 435 A 1 
HETATM 6 O O3 GP7 . . . D 3 13.182 93.771 19.065 0.5 81.82 ? O3 GP7 435 A 1 
HETATM 7 C C11 GP7 . . . D 3 11.769 93.627 18.718 0.5 80.73 ? C11 GP7 435 A 1 
HETATM 8 O O11 GP7 . . . D 3 11.009 93.122 19.523 0.5 79.93 ? O11 GP7 435 A 1 
HETATM 9 C C12 GP7 . . . D 3 11.237 94.104 17.377 0.5 80.23 ? C12 GP7 435 A 1 
HETATM 10 C C13 GP7 . . . D 3 10.577 95.486 17.522 1 79.79 ? C13 GP7 435 A 1 
HETATM 11 C C14 GP7 . . . D 3 9.746 95.893 16.293 1 77.64 ? C14 GP7 435 A 1 
HETATM 12 C C15 GP7 . . . D 3 10.194 97.224 15.679 1 73.92 ? C15 GP7 435 A 1 
HETATM 13 C C16 GP7 . . . D 3 9.662 97.302 14.246 1 71.86 ? C16 GP7 435 A 1 
HETATM 14 C C17 GP7 . . . D 3 9.725 98.731 13.704 1 70.06 ? C17 GP7 435 A 1 
HETATM 15 C C18 GP7 . . . D 3 11.003 99.001 12.919 1 66.06 ? C18 GP7 435 A 1 
HETATM 16 C C19 GP7 . . . D 3 11.968 99.86 13.706 1 61.53 ? C19 GP7 435 A 1 
HETATM 17 O O1P GP7 . . . D 3 15.012 88.694 19.697 0.3 82.38 ? O1P GP7 435 A 1 
HETATM 18 C C20 GP7 . . . D 3 12.745 100.672 12.69 1 59.7 ? C20 GP7 435 A 1 
HETATM 19 C C21 GP7 . . . D 3 14.144 100.884 13.244 1 60.55 ? C21 GP7 435 A 1 
HETATM 20 C C22 GP7 . . . D 3 14.5 102.346 13.067 1 60.34 ? C22 GP7 435 A 1 
HETATM 21 C C23 GP7 . . . D 3 15.958 102.577 13.413 1 62.28 ? C23 GP7 435 A 1 
HETATM 22 C C24 GP7 . . . D 3 16.141 103.946 14.085 1 65.66 ? C24 GP7 435 A 1 
HETATM 23 C C25 GP7 . . . D 3 15.727 105.156 13.239 1 66.35 ? C25 GP7 435 A 1 
HETATM 24 O O2P GP7 . . . D 3 13.306 87.803 21.363 0.3 82.61 ? O2P GP7 435 A 1 
HETATM 25 C C31 GP7 . . . D 3 15.414 91.763 17.754 0.5 84.58 ? C31 GP7 435 A 1 
HETATM 26 O O31 GP7 . . . D 3 15.981 90.735 17.393 0.5 85.28 ? O31 GP7 435 A 1 
HETATM 27 C C32 GP7 . . . D 3 14.505 92.51 16.785 0.5 83.3 ? C32 GP7 435 A 1 
HETATM 28 C C33 GP7 . . . D 3 15.265 93.011 15.562 1 82.63 ? C33 GP7 435 A 1 
HETATM 29 C C34 GP7 . . . D 3 16.22 94.168 15.897 1 82.61 ? C34 GP7 435 A 1 
HETATM 30 C C35 GP7 . . . D 3 17.337 94.294 14.847 1 81.95 ? C35 GP7 435 A 1 
HETATM 31 C C36 GP7 . . . D 3 18.519 95.12 15.352 1 80.85 ? C36 GP7 435 A 1 
HETATM 32 C C37 GP7 . . . D 3 19.293 95.769 14.201 1 79.61 ? C37 GP7 435 A 1 
HETATM 33 C C38 GP7 . . . D 3 18.591 97.009 13.638 1 76.97 ? C38 GP7 435 A 1 
HETATM 34 C C39 GP7 . . . D 3 19.538 97.935 12.851 1 76.01 ? C39 GP7 435 A 1 
HETATM 35 O O3P GP7 . . . D 3 14.141 90.121 21.529 0.3 83.14 ? O3P GP7 435 A 1 
HETATM 36 C C40 GP7 . . . D 3 18.781 99.06 12.12 1 73.46 ? C40 GP7 435 A 1 
HETATM 37 C C41 GP7 . . . D 3 19.634 100.246 11.686 1 69.35 ? C41 GP7 435 A 1 
HETATM 38 C C42 GP7 . . . D 3 19.46 100.477 10.197 1 68.74 ? C42 GP7 435 A 1 
HETATM 39 C C43 GP7 . . . D 3 20.57 101.385 9.705 1 70.12 ? C43 GP7 435 A 1 
HETATM 40 C C44 GP7 . . . D 3 20.562 101.624 8.198 1 70.19 ? C44 GP7 435 A 1 
HETATM 41 C C45 GP7 . . . D 3 21.685 102.622 7.894 1 70.93 ? C45 GP7 435 A 1 
HETATM 42 C C46 GP7 . . . D 3 21.836 102.854 6.402 1 70.93 ? C46 GP7 435 A 1 
HETATM 43 O O4P GP7 . . . D 3 12.605 89.537 19.677 0.3 82.37 ? O4P GP7 435 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#