data_3K7T
#
_model_server_result.job_id            zbkpxioSWKqkPMdcBz8dzA 
_model_server_result.datetime_utc      '2024-11-23 18:34:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k7t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":435}' 
#
_entry.id    3K7T 
#
_exptl.entry_id    3K7T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              673.901 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3K7T 
_cell.length_a            122.957 
_cell.length_b            122.957 
_cell.length_c            199.918 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K7T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C36 H68 N O8 P' 
_chem_comp.formula_weight    673.901 
_chem_comp.id                GP7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-pentadecanoyl-2-hexadecanoyl-sn-glycero-3-phosphoethanolamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P GP7 doub 220 n n 
P O2P GP7 sing 221 n n 
P O3P GP7 sing 222 n n 
P O4P GP7 sing 223 n n 
C1 C2 GP7 sing 224 n n 
C1 O3P GP7 sing 225 n n 
C2 O2 GP7 sing 226 n n 
C2 C3 GP7 sing 227 n n 
O2 C31 GP7 sing 228 n n 
C3 O3 GP7 sing 229 n n 
O3 C11 GP7 sing 230 n n 
C11 O11 GP7 doub 231 n n 
C11 C12 GP7 sing 232 n n 
C12 C13 GP7 sing 233 n n 
C13 C14 GP7 sing 234 n n 
C14 C15 GP7 sing 235 n n 
C15 C16 GP7 sing 236 n n 
C16 C17 GP7 sing 237 n n 
C17 C18 GP7 sing 238 n n 
C18 C19 GP7 sing 239 n n 
C19 C20 GP7 sing 240 n n 
C20 C21 GP7 sing 241 n n 
C21 C22 GP7 sing 242 n n 
C22 C23 GP7 sing 243 n n 
C23 C24 GP7 sing 244 n n 
C24 C25 GP7 sing 245 n n 
C31 O31 GP7 doub 246 n n 
C31 C32 GP7 sing 247 n n 
C32 C33 GP7 sing 248 n n 
C33 C34 GP7 sing 249 n n 
C34 C35 GP7 sing 250 n n 
C35 C36 GP7 sing 251 n n 
C36 C37 GP7 sing 252 n n 
C37 C38 GP7 sing 253 n n 
C38 C39 GP7 sing 254 n n 
C39 C40 GP7 doub 255 n n 
C40 C41 GP7 sing 256 n n 
C41 C42 GP7 sing 257 n n 
C42 C43 GP7 doub 258 n n 
C43 C44 GP7 sing 259 n n 
C44 C45 GP7 sing 260 n n 
C45 C46 GP7 sing 261 n n 
O4P C351 GP7 sing 262 n n 
C351 C361 GP7 sing 263 n n 
C361 N1 GP7 sing 264 n n 
C1 H1 GP7 sing 265 n n 
C1 H1A GP7 sing 266 n n 
C2 H2 GP7 sing 267 n n 
C3 H3 GP7 sing 268 n n 
C3 H3A GP7 sing 269 n n 
C12 H12 GP7 sing 270 n n 
C12 H12A GP7 sing 271 n n 
C13 H13 GP7 sing 272 n n 
C13 H13A GP7 sing 273 n n 
C14 H14 GP7 sing 274 n n 
C14 H14A GP7 sing 275 n n 
C15 H15 GP7 sing 276 n n 
C15 H15A GP7 sing 277 n n 
C16 H16 GP7 sing 278 n n 
C16 H16A GP7 sing 279 n n 
C17 H17 GP7 sing 280 n n 
C17 H17A GP7 sing 281 n n 
C18 H18 GP7 sing 282 n n 
C18 H18A GP7 sing 283 n n 
C19 H19 GP7 sing 284 n n 
C19 H19A GP7 sing 285 n n 
C20 H20 GP7 sing 286 n n 
C20 H20A GP7 sing 287 n n 
C21 H21 GP7 sing 288 n n 
C21 H21A GP7 sing 289 n n 
C22 H22 GP7 sing 290 n n 
C22 H22A GP7 sing 291 n n 
C23 H23 GP7 sing 292 n n 
C23 H23A GP7 sing 293 n n 
C24 H24 GP7 sing 294 n n 
C24 H24A GP7 sing 295 n n 
C25 H25 GP7 sing 296 n n 
C25 H25A GP7 sing 297 n n 
C25 H25B GP7 sing 298 n n 
O2P H351 GP7 sing 299 n n 
C32 H32 GP7 sing 300 n n 
C32 H32A GP7 sing 301 n n 
C33 H33 GP7 sing 302 n n 
C33 H33A GP7 sing 303 n n 
C34 H34 GP7 sing 304 e n 
C34 H34A GP7 sing 305 n n 
C35 H35 GP7 sing 306 n n 
C35 H35A GP7 sing 307 n n 
C36 H36 GP7 sing 308 n n 
C36 H36A GP7 sing 309 n n 
C37 H37 GP7 sing 310 n n 
C37 H37A GP7 sing 311 e n 
C38 H38 GP7 sing 312 n n 
C38 H38A GP7 sing 313 n n 
C39 H39 GP7 sing 314 n n 
C40 H40 GP7 sing 315 n n 
C41 H41 GP7 sing 316 n n 
C41 H41A GP7 sing 317 n n 
C42 H42 GP7 sing 318 n n 
C43 H43 GP7 sing 319 n n 
C44 H44 GP7 sing 320 n n 
C44 H44A GP7 sing 321 n n 
C45 H45 GP7 sing 322 n n 
C45 H45A GP7 sing 323 n n 
C46 H46 GP7 sing 324 n n 
C46 H46A GP7 sing 325 n n 
C46 H46B GP7 sing 326 n n 
C351 H63 GP7 sing 327 n n 
C351 H64 GP7 sing 328 n n 
C361 H65 GP7 sing 329 n n 
C361 H66 GP7 sing 330 n n 
N1 H67 GP7 sing 331 n n 
N1 H68 GP7 sing 332 n n 
#
_atom_sites.entry_id                     3K7T 
_atom_sites.fract_transf_matrix[1][1]    0.008133 
_atom_sites.fract_transf_matrix[1][2]    0.004696 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 434 434 FAD FAD . 
D 3 GP7 A 1 435 435 GP7 GP7 . 
E 2 FAD B 1 434 434 FAD FAD . 
F 3 GP7 B 1 435 435 GP7 GP7 . 
G 4 HOH A 1 505 505 HOH HOH . 
G 4 HOH A 2 509 509 HOH HOH . 
G 4 HOH A 3 511 511 HOH HOH . 
G 4 HOH A 4 515 515 HOH HOH . 
G 4 HOH A 5 517 517 HOH HOH . 
G 4 HOH A 6 520 520 HOH HOH . 
G 4 HOH A 7 521 521 HOH HOH . 
G 4 HOH A 8 524 524 HOH HOH . 
G 4 HOH A 9 526 526 HOH HOH . 
G 4 HOH A 10 527 527 HOH HOH . 
G 4 HOH A 11 533 533 HOH HOH . 
G 4 HOH A 12 534 534 HOH HOH . 
G 4 HOH A 13 540 540 HOH HOH . 
G 4 HOH A 14 541 541 HOH HOH . 
G 4 HOH A 15 542 542 HOH HOH . 
G 4 HOH A 16 543 543 HOH HOH . 
G 4 HOH A 17 544 544 HOH HOH . 
G 4 HOH A 18 547 547 HOH HOH . 
G 4 HOH A 19 552 552 HOH HOH . 
H 4 HOH B 1 500 500 HOH HOH . 
H 4 HOH B 2 501 501 HOH HOH . 
H 4 HOH B 3 504 504 HOH HOH . 
H 4 HOH B 4 506 506 HOH HOH . 
H 4 HOH B 5 508 508 HOH HOH . 
H 4 HOH B 6 510 510 HOH HOH . 
H 4 HOH B 7 514 514 HOH HOH . 
H 4 HOH B 8 516 516 HOH HOH . 
H 4 HOH B 9 518 518 HOH HOH . 
H 4 HOH B 10 519 519 HOH HOH . 
H 4 HOH B 11 528 528 HOH HOH . 
H 4 HOH B 12 529 529 HOH HOH . 
H 4 HOH B 13 530 530 HOH HOH . 
H 4 HOH B 14 531 531 HOH HOH . 
H 4 HOH B 15 536 536 HOH HOH . 
H 4 HOH B 16 538 538 HOH HOH . 
H 4 HOH B 17 545 545 HOH HOH . 
H 4 HOH B 18 546 546 HOH HOH . 
H 4 HOH B 19 548 548 HOH HOH . 
H 4 HOH B 20 549 549 HOH HOH . 
H 4 HOH B 21 550 550 HOH HOH . 
H 4 HOH B 22 551 551 HOH HOH . 
H 4 HOH B 23 553 553 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P GP7 . . . F 3 9.016 100.332 28.344 0.3 72.95 ? P GP7 435 B 1 
HETATM 2 C C1 GP7 . . . F 3 10.152 98.396 26.921 0.5 72.96 ? C1 GP7 435 B 1 
HETATM 3 C C2 GP7 . . . F 3 9.111 98.644 25.837 0.5 73.37 ? C2 GP7 435 B 1 
HETATM 4 O O2 GP7 . . . F 3 7.808 98.458 26.385 0.5 74.52 ? O2 GP7 435 B 1 
HETATM 5 C C3 GP7 . . . F 3 9.339 97.729 24.633 0.5 72.84 ? C3 GP7 435 B 1 
HETATM 6 O O3 GP7 . . . F 3 9.216 98.452 23.404 0.5 71.38 ? O3 GP7 435 B 1 
HETATM 7 C C11 GP7 . . . F 3 10.338 99.207 22.869 0.5 69.47 ? C11 GP7 435 B 1 
HETATM 8 O O11 GP7 . . . F 3 10.92 99.988 23.594 0.5 68.61 ? O11 GP7 435 B 1 
HETATM 9 C C12 GP7 . . . F 3 10.785 99.044 21.44 0.5 69.36 ? C12 GP7 435 B 1 
HETATM 10 C C13 GP7 . . . F 3 9.604 99.254 20.507 1 68.42 ? C13 GP7 435 B 1 
HETATM 11 C C14 GP7 . . . F 3 9.994 100.091 19.3 1 68.35 ? C14 GP7 435 B 1 
HETATM 12 C C15 GP7 . . . F 3 8.95 99.932 18.208 1 66.91 ? C15 GP7 435 B 1 
HETATM 13 C C16 GP7 . . . F 3 8.936 101.122 17.268 1 65.39 ? C16 GP7 435 B 1 
HETATM 14 C C17 GP7 . . . F 3 7.913 100.891 16.168 1 66.56 ? C17 GP7 435 B 1 
HETATM 15 C C18 GP7 . . . F 3 6.746 100.063 16.677 1 66.1 ? C18 GP7 435 B 1 
HETATM 16 C C19 GP7 . . . F 3 5.799 99.713 15.542 1 63.81 ? C19 GP7 435 B 1 
HETATM 17 O O1P GP7 . . . F 3 7.529 100.112 28.197 0.3 72.44 ? O1P GP7 435 B 1 
HETATM 18 C C20 GP7 . . . F 3 4.419 100.298 15.776 1 60.32 ? C20 GP7 435 B 1 
HETATM 19 C C21 GP7 . . . F 3 3.474 99.246 16.322 1 57.49 ? C21 GP7 435 B 1 
HETATM 20 C C22 GP7 . . . F 3 2.873 98.422 15.201 1 57.64 ? C22 GP7 435 B 1 
HETATM 21 C C23 GP7 . . . F 3 1.89 97.43 15.791 1 58.28 ? C23 GP7 435 B 1 
HETATM 22 C C24 GP7 . . . F 3 1.021 96.816 14.711 1 60.26 ? C24 GP7 435 B 1 
HETATM 23 C C25 GP7 . . . F 3 1.702 96.95 13.374 1 60.27 ? C25 GP7 435 B 1 
HETATM 24 O O2P GP7 . . . F 3 9.447 100.771 29.721 0.3 71.5 ? O2P GP7 435 B 1 
HETATM 25 C C31 GP7 . . . F 3 6.864 99.394 25.802 0.5 72.91 ? C31 GP7 435 B 1 
HETATM 26 O O31 GP7 . . . F 3 5.995 99.887 26.499 0.5 70.81 ? O31 GP7 435 B 1 
HETATM 27 C C32 GP7 . . . F 3 6.979 99.745 24.341 0.5 72.39 ? C32 GP7 435 B 1 
HETATM 28 C C33 GP7 . . . F 3 5.588 99.949 23.769 1 73.13 ? C33 GP7 435 B 1 
HETATM 29 C C34 GP7 . . . F 3 4.692 100.657 24.768 1 71.96 ? C34 GP7 435 B 1 
HETATM 30 C C35 GP7 . . . F 3 3.257 100.588 24.275 1 70.9 ? C35 GP7 435 B 1 
HETATM 31 C C36 GP7 . . . F 3 3.171 99.712 23.037 1 69.47 ? C36 GP7 435 B 1 
HETATM 32 C C37 GP7 . . . F 3 1.783 99.112 22.908 1 66.14 ? C37 GP7 435 B 1 
HETATM 33 C C38 GP7 . . . F 3 0.989 99.881 21.872 1 64.38 ? C38 GP7 435 B 1 
HETATM 34 C C39 GP7 . . . F 3 0.617 98.973 20.717 1 65.63 ? C39 GP7 435 B 1 
HETATM 35 O O3P GP7 . . . F 3 9.65 98.858 28.175 0.3 72.57 ? O3P GP7 435 B 1 
HETATM 36 C C40 GP7 . . . F 3 0.082 99.77 19.541 1 66.69 ? C40 GP7 435 B 1 
HETATM 37 C C41 GP7 . . . F 3 -1.084 99.045 18.889 1 66.86 ? C41 GP7 435 B 1 
HETATM 38 C C42 GP7 . . . F 3 -2.062 100.032 18.27 1 67.38 ? C42 GP7 435 B 1 
HETATM 39 C C43 GP7 . . . F 3 -3.325 99.326 17.811 1 68.22 ? C43 GP7 435 B 1 
HETATM 40 C C44 GP7 . . . F 3 -4.035 100.152 16.757 1 69.51 ? C44 GP7 435 B 1 
HETATM 41 C C45 GP7 . . . F 3 -5.38 100.629 17.273 1 70.51 ? C45 GP7 435 B 1 
HETATM 42 C C46 GP7 . . . F 3 -6.23 101.162 16.146 1 71.9 ? C46 GP7 435 B 1 
HETATM 43 O O4P GP7 . . . F 3 9.643 101.137 27.236 0.3 72.42 ? O4P GP7 435 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#