data_3K7V # _model_server_result.job_id lOTfE1bDMnYBmz7MLKmecw _model_server_result.datetime_utc '2024-11-08 15:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3K7V # _exptl.entry_id 3K7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K7V _cell.length_a 92.83 _cell.length_b 194.78 _cell.length_c 202.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 57 C ASP 57 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 B NE2 HIS 59 C HIS 59 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 B OD2 ASP 85 C ASP 85 1_555 E MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc4 B OD2 ASP 85 C ASP 85 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc5 B OD1 ASN 117 C ASN 117 1_555 E MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc6 B NE2 HIS 167 C HIS 167 1_555 E MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 B ND1 HIS 241 C HIS 241 1_555 E MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K7V _atom_sites.fract_transf_matrix[1][1] 0.010772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 590 3 SO4 SO4 . D 4 XT1 C 1 401 401 XT1 XT1 . E 5 MN C 1 501 501 MN MN . F 5 MN C 1 502 502 MN MN . G 3 SO4 C 1 310 1 SO4 SO4 . H 3 SO4 C 1 311 2 SO4 SO4 . I 6 HOH A 1 591 6 HOH HOH . I 6 HOH A 2 592 9 HOH HOH . I 6 HOH A 3 593 13 HOH HOH . I 6 HOH A 4 594 14 HOH HOH . I 6 HOH A 5 595 16 HOH HOH . I 6 HOH A 6 596 18 HOH HOH . I 6 HOH A 7 597 20 HOH HOH . I 6 HOH A 8 598 26 HOH HOH . I 6 HOH A 9 599 33 HOH HOH . I 6 HOH A 10 600 35 HOH HOH . I 6 HOH A 11 601 36 HOH HOH . I 6 HOH A 12 602 37 HOH HOH . I 6 HOH A 13 603 38 HOH HOH . I 6 HOH A 14 604 39 HOH HOH . I 6 HOH A 15 605 40 HOH HOH . I 6 HOH A 16 606 43 HOH HOH . J 6 HOH C 1 312 1 HOH HOH . J 6 HOH C 2 313 2 HOH HOH . J 6 HOH C 3 314 3 HOH HOH . J 6 HOH C 4 315 4 HOH HOH . J 6 HOH C 5 316 5 HOH HOH . J 6 HOH C 6 317 7 HOH HOH . J 6 HOH C 7 318 8 HOH HOH . J 6 HOH C 8 319 10 HOH HOH . J 6 HOH C 9 320 11 HOH HOH . J 6 HOH C 10 321 12 HOH HOH . J 6 HOH C 11 322 15 HOH HOH . J 6 HOH C 12 323 17 HOH HOH . J 6 HOH C 13 324 19 HOH HOH . J 6 HOH C 14 325 21 HOH HOH . J 6 HOH C 15 326 22 HOH HOH . J 6 HOH C 16 327 23 HOH HOH . J 6 HOH C 17 328 24 HOH HOH . J 6 HOH C 18 329 25 HOH HOH . J 6 HOH C 19 330 27 HOH HOH . J 6 HOH C 20 331 28 HOH HOH . J 6 HOH C 21 332 29 HOH HOH . J 6 HOH C 22 333 30 HOH HOH . J 6 HOH C 23 334 31 HOH HOH . J 6 HOH C 24 335 32 HOH HOH . J 6 HOH C 25 336 34 HOH HOH . J 6 HOH C 26 337 41 HOH HOH . J 6 HOH C 27 338 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 39.371 _atom_site.Cartn_y -43.42 _atom_site.Cartn_z -44.741 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 71 _model_server_stats.create_model_time_ms 146 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #