data_3K8G
#
_model_server_result.job_id            NPLwD4_H5KaI-6sgiK36Hw 
_model_server_result.datetime_utc      '2024-10-20 01:31:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3K8G 
#
_exptl.entry_id    3K8G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3K8G 
_cell.length_a            87.747 
_cell.length_b            159.872 
_cell.length_c            44.527 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     3K8G 
_atom_sites.fract_transf_matrix[1][1]    0.011396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022458 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 300 300 MPD MPD . 
D 2 MPD A 1 301 301 MPD MPD . 
E 2 MPD A 1 303 303 MPD MPD . 
F 2 MPD B 1 302 302 MPD MPD . 
G 3 HOH A 1 304 304 HOH HOH . 
G 3 HOH A 2 305 305 HOH HOH . 
G 3 HOH A 3 307 307 HOH HOH . 
G 3 HOH A 4 309 309 HOH HOH . 
G 3 HOH A 5 313 313 HOH HOH . 
G 3 HOH A 6 314 314 HOH HOH . 
G 3 HOH A 7 316 316 HOH HOH . 
G 3 HOH A 8 317 317 HOH HOH . 
G 3 HOH A 9 318 318 HOH HOH . 
G 3 HOH A 10 319 319 HOH HOH . 
G 3 HOH A 11 320 320 HOH HOH . 
G 3 HOH A 12 321 321 HOH HOH . 
G 3 HOH A 13 323 323 HOH HOH . 
G 3 HOH A 14 324 324 HOH HOH . 
G 3 HOH A 15 325 325 HOH HOH . 
G 3 HOH A 16 326 326 HOH HOH . 
G 3 HOH A 17 328 328 HOH HOH . 
G 3 HOH A 18 331 331 HOH HOH . 
G 3 HOH A 19 333 333 HOH HOH . 
G 3 HOH A 20 334 334 HOH HOH . 
G 3 HOH A 21 336 336 HOH HOH . 
G 3 HOH A 22 337 337 HOH HOH . 
G 3 HOH A 23 338 338 HOH HOH . 
G 3 HOH A 24 339 339 HOH HOH . 
G 3 HOH A 25 342 342 HOH HOH . 
G 3 HOH A 26 343 343 HOH HOH . 
G 3 HOH A 27 344 344 HOH HOH . 
G 3 HOH A 28 345 345 HOH HOH . 
G 3 HOH A 29 347 347 HOH HOH . 
G 3 HOH A 30 352 352 HOH HOH . 
G 3 HOH A 31 353 353 HOH HOH . 
G 3 HOH A 32 356 356 HOH HOH . 
G 3 HOH A 33 357 357 HOH HOH . 
G 3 HOH A 34 359 359 HOH HOH . 
G 3 HOH A 35 360 360 HOH HOH . 
G 3 HOH A 36 361 361 HOH HOH . 
G 3 HOH A 37 363 363 HOH HOH . 
G 3 HOH A 38 364 364 HOH HOH . 
G 3 HOH A 39 365 365 HOH HOH . 
G 3 HOH A 40 371 371 HOH HOH . 
G 3 HOH A 41 375 375 HOH HOH . 
G 3 HOH A 42 376 376 HOH HOH . 
G 3 HOH A 43 380 380 HOH HOH . 
G 3 HOH A 44 382 382 HOH HOH . 
G 3 HOH A 45 383 383 HOH HOH . 
G 3 HOH A 46 386 386 HOH HOH . 
G 3 HOH A 47 387 387 HOH HOH . 
G 3 HOH A 48 388 388 HOH HOH . 
G 3 HOH A 49 389 389 HOH HOH . 
G 3 HOH A 50 390 390 HOH HOH . 
G 3 HOH A 51 391 391 HOH HOH . 
G 3 HOH A 52 392 392 HOH HOH . 
G 3 HOH A 53 393 393 HOH HOH . 
G 3 HOH A 54 394 394 HOH HOH . 
G 3 HOH A 55 395 395 HOH HOH . 
G 3 HOH A 56 396 396 HOH HOH . 
G 3 HOH A 57 397 397 HOH HOH . 
G 3 HOH A 58 398 398 HOH HOH . 
G 3 HOH A 59 400 400 HOH HOH . 
G 3 HOH A 60 401 401 HOH HOH . 
G 3 HOH A 61 402 402 HOH HOH . 
G 3 HOH A 62 403 403 HOH HOH . 
G 3 HOH A 63 404 404 HOH HOH . 
G 3 HOH A 64 405 405 HOH HOH . 
G 3 HOH A 65 406 406 HOH HOH . 
G 3 HOH A 66 407 407 HOH HOH . 
G 3 HOH A 67 416 416 HOH HOH . 
G 3 HOH A 68 417 417 HOH HOH . 
G 3 HOH A 69 418 418 HOH HOH . 
G 3 HOH A 70 419 419 HOH HOH . 
G 3 HOH A 71 420 420 HOH HOH . 
G 3 HOH A 72 421 421 HOH HOH . 
G 3 HOH A 73 422 422 HOH HOH . 
G 3 HOH A 74 423 423 HOH HOH . 
G 3 HOH A 75 424 424 HOH HOH . 
G 3 HOH A 76 425 425 HOH HOH . 
G 3 HOH A 77 426 426 HOH HOH . 
G 3 HOH A 78 427 427 HOH HOH . 
G 3 HOH A 79 428 428 HOH HOH . 
G 3 HOH A 80 429 429 HOH HOH . 
G 3 HOH A 81 430 430 HOH HOH . 
G 3 HOH A 82 432 432 HOH HOH . 
G 3 HOH A 83 433 433 HOH HOH . 
G 3 HOH A 84 434 434 HOH HOH . 
G 3 HOH A 85 435 435 HOH HOH . 
G 3 HOH A 86 436 436 HOH HOH . 
G 3 HOH A 87 437 437 HOH HOH . 
G 3 HOH A 88 455 455 HOH HOH . 
G 3 HOH A 89 456 456 HOH HOH . 
G 3 HOH A 90 457 457 HOH HOH . 
G 3 HOH A 91 458 458 HOH HOH . 
G 3 HOH A 92 459 459 HOH HOH . 
G 3 HOH A 93 460 460 HOH HOH . 
G 3 HOH A 94 461 461 HOH HOH . 
G 3 HOH A 95 462 462 HOH HOH . 
G 3 HOH A 96 463 463 HOH HOH . 
G 3 HOH A 97 464 464 HOH HOH . 
G 3 HOH A 98 465 465 HOH HOH . 
G 3 HOH A 99 466 466 HOH HOH . 
G 3 HOH A 100 468 468 HOH HOH . 
G 3 HOH A 101 482 482 HOH HOH . 
G 3 HOH A 102 483 483 HOH HOH . 
G 3 HOH A 103 484 484 HOH HOH . 
G 3 HOH A 104 485 485 HOH HOH . 
G 3 HOH A 105 486 486 HOH HOH . 
G 3 HOH A 106 487 487 HOH HOH . 
G 3 HOH A 107 488 488 HOH HOH . 
G 3 HOH A 108 489 489 HOH HOH . 
G 3 HOH A 109 490 490 HOH HOH . 
G 3 HOH A 110 492 492 HOH HOH . 
G 3 HOH A 111 493 493 HOH HOH . 
G 3 HOH A 112 494 494 HOH HOH . 
G 3 HOH A 113 495 495 HOH HOH . 
G 3 HOH A 114 496 496 HOH HOH . 
G 3 HOH A 115 497 497 HOH HOH . 
G 3 HOH A 116 498 498 HOH HOH . 
G 3 HOH A 117 505 505 HOH HOH . 
G 3 HOH A 118 509 509 HOH HOH . 
G 3 HOH A 119 510 510 HOH HOH . 
G 3 HOH A 120 511 511 HOH HOH . 
G 3 HOH A 121 512 512 HOH HOH . 
G 3 HOH A 122 513 513 HOH HOH . 
G 3 HOH A 123 514 514 HOH HOH . 
G 3 HOH A 124 516 516 HOH HOH . 
H 3 HOH B 1 306 306 HOH HOH . 
H 3 HOH B 2 308 308 HOH HOH . 
H 3 HOH B 3 310 310 HOH HOH . 
H 3 HOH B 4 311 311 HOH HOH . 
H 3 HOH B 5 312 312 HOH HOH . 
H 3 HOH B 6 315 315 HOH HOH . 
H 3 HOH B 7 322 322 HOH HOH . 
H 3 HOH B 8 327 327 HOH HOH . 
H 3 HOH B 9 329 329 HOH HOH . 
H 3 HOH B 10 330 330 HOH HOH . 
H 3 HOH B 11 332 332 HOH HOH . 
H 3 HOH B 12 335 335 HOH HOH . 
H 3 HOH B 13 340 340 HOH HOH . 
H 3 HOH B 14 341 341 HOH HOH . 
H 3 HOH B 15 346 346 HOH HOH . 
H 3 HOH B 16 348 348 HOH HOH . 
H 3 HOH B 17 349 349 HOH HOH . 
H 3 HOH B 18 350 350 HOH HOH . 
H 3 HOH B 19 351 351 HOH HOH . 
H 3 HOH B 20 354 354 HOH HOH . 
H 3 HOH B 21 355 355 HOH HOH . 
H 3 HOH B 22 358 358 HOH HOH . 
H 3 HOH B 23 362 362 HOH HOH . 
H 3 HOH B 24 366 366 HOH HOH . 
H 3 HOH B 25 367 367 HOH HOH . 
H 3 HOH B 26 368 368 HOH HOH . 
H 3 HOH B 27 369 369 HOH HOH . 
H 3 HOH B 28 370 370 HOH HOH . 
H 3 HOH B 29 372 372 HOH HOH . 
H 3 HOH B 30 373 373 HOH HOH . 
H 3 HOH B 31 374 374 HOH HOH . 
H 3 HOH B 32 377 377 HOH HOH . 
H 3 HOH B 33 378 378 HOH HOH . 
H 3 HOH B 34 379 379 HOH HOH . 
H 3 HOH B 35 381 381 HOH HOH . 
H 3 HOH B 36 384 384 HOH HOH . 
H 3 HOH B 37 385 385 HOH HOH . 
H 3 HOH B 38 399 399 HOH HOH . 
H 3 HOH B 39 408 408 HOH HOH . 
H 3 HOH B 40 409 409 HOH HOH . 
H 3 HOH B 41 410 410 HOH HOH . 
H 3 HOH B 42 411 411 HOH HOH . 
H 3 HOH B 43 412 412 HOH HOH . 
H 3 HOH B 44 413 413 HOH HOH . 
H 3 HOH B 45 414 414 HOH HOH . 
H 3 HOH B 46 415 415 HOH HOH . 
H 3 HOH B 47 431 431 HOH HOH . 
H 3 HOH B 48 438 438 HOH HOH . 
H 3 HOH B 49 439 439 HOH HOH . 
H 3 HOH B 50 440 440 HOH HOH . 
H 3 HOH B 51 441 441 HOH HOH . 
H 3 HOH B 52 442 442 HOH HOH . 
H 3 HOH B 53 443 443 HOH HOH . 
H 3 HOH B 54 444 444 HOH HOH . 
H 3 HOH B 55 445 445 HOH HOH . 
H 3 HOH B 56 446 446 HOH HOH . 
H 3 HOH B 57 447 447 HOH HOH . 
H 3 HOH B 58 448 448 HOH HOH . 
H 3 HOH B 59 449 449 HOH HOH . 
H 3 HOH B 60 450 450 HOH HOH . 
H 3 HOH B 61 451 451 HOH HOH . 
H 3 HOH B 62 452 452 HOH HOH . 
H 3 HOH B 63 453 453 HOH HOH . 
H 3 HOH B 64 454 454 HOH HOH . 
H 3 HOH B 65 467 467 HOH HOH . 
H 3 HOH B 66 469 469 HOH HOH . 
H 3 HOH B 67 470 470 HOH HOH . 
H 3 HOH B 68 471 471 HOH HOH . 
H 3 HOH B 69 472 472 HOH HOH . 
H 3 HOH B 70 473 473 HOH HOH . 
H 3 HOH B 71 474 474 HOH HOH . 
H 3 HOH B 72 475 475 HOH HOH . 
H 3 HOH B 73 476 476 HOH HOH . 
H 3 HOH B 74 477 477 HOH HOH . 
H 3 HOH B 75 478 478 HOH HOH . 
H 3 HOH B 76 479 479 HOH HOH . 
H 3 HOH B 77 480 480 HOH HOH . 
H 3 HOH B 78 481 481 HOH HOH . 
H 3 HOH B 79 491 491 HOH HOH . 
H 3 HOH B 80 499 499 HOH HOH . 
H 3 HOH B 81 500 500 HOH HOH . 
H 3 HOH B 82 501 501 HOH HOH . 
H 3 HOH B 83 502 502 HOH HOH . 
H 3 HOH B 84 503 503 HOH HOH . 
H 3 HOH B 85 504 504 HOH HOH . 
H 3 HOH B 86 506 506 HOH HOH . 
H 3 HOH B 87 507 507 HOH HOH . 
H 3 HOH B 88 508 508 HOH HOH . 
H 3 HOH B 89 515 515 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 2 81.601 37.382 1.874 1 37.31 ? C1 MPD 301 A 1 
HETATM 2 C C2 MPD . . . D 2 80.941 37.677 0.527 1 37.08 ? C2 MPD 301 A 1 
HETATM 3 O O2 MPD . . . D 2 80.486 39.052 0.58 1 38.87 ? O2 MPD 301 A 1 
HETATM 4 C CM MPD . . . D 2 81.915 37.488 -0.645 1 36.91 ? CM MPD 301 A 1 
HETATM 5 C C3 MPD . . . D 2 79.698 36.832 0.316 1 35.76 ? C3 MPD 301 A 1 
HETATM 6 C C4 MPD . . . D 2 79.988 35.337 0.286 1 39.64 ? C4 MPD 301 A 1 
HETATM 7 O O4 MPD . . . D 2 80.828 35.013 -0.803 1 38.98 ? O4 MPD 301 A 1 
HETATM 8 C C5 MPD . . . D 2 78.667 34.576 0.232 1 28.28 ? C5 MPD 301 A 1 
#
_model_server_stats.io_time_ms              113 
_model_server_stats.parse_time_ms           98 
_model_server_stats.create_model_time_ms    100 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#