data_3K8T
#
_model_server_result.job_id            8IKBN1EnGpzn_f5z2CRX5g 
_model_server_result.datetime_utc      '2024-10-14 04:23:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3k8t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":892}' 
#
_entry.id    3K8T 
#
_exptl.entry_id    3K8T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3K8T 
_cell.length_a            107.528 
_cell.length_b            116.915 
_cell.length_c            64.065 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3K8T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 116.915 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 889 1_555 C O1G DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc2 B MG MG . A MG 889 1_555 C O1B DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 B MG MG . A MG 889 1_555 C O1A DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 B MG MG . A MG 889 1_555 F O HOH . A HOH 942 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 B MG MG . A MG 889 1_555 F O HOH . A HOH 948 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 228 n n 
C1 C2 GOL sing 229 n n 
C1 H11 GOL sing 230 n n 
C1 H12 GOL sing 231 n n 
O1 HO1 GOL sing 232 n n 
C2 O2 GOL sing 233 n n 
C2 C3 GOL sing 234 n n 
C2 H2 GOL sing 235 n n 
O2 HO2 GOL sing 236 n n 
C3 O3 GOL sing 237 n n 
C3 H31 GOL sing 238 n n 
C3 H32 GOL sing 239 n n 
O3 HO3 GOL sing 240 n n 
#
_atom_sites.entry_id                     3K8T 
_atom_sites.fract_transf_matrix[1][1]    0.0093 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 889 889 MG MG . 
C 3 DGT A 1 890 890 DGT DGT . 
D 4 2A5 A 1 891 891 2A5 2A5 . 
E 5 GOL A 1 892 892 GOL GOL . 
F 6 HOH A 1 893 893 HOH HOH . 
F 6 HOH A 2 894 894 HOH HOH . 
F 6 HOH A 3 895 895 HOH HOH . 
F 6 HOH A 4 896 896 HOH HOH . 
F 6 HOH A 5 897 897 HOH HOH . 
F 6 HOH A 6 898 898 HOH HOH . 
F 6 HOH A 7 899 899 HOH HOH . 
F 6 HOH A 8 900 900 HOH HOH . 
F 6 HOH A 9 901 901 HOH HOH . 
F 6 HOH A 10 902 902 HOH HOH . 
F 6 HOH A 11 903 903 HOH HOH . 
F 6 HOH A 12 904 904 HOH HOH . 
F 6 HOH A 13 905 905 HOH HOH . 
F 6 HOH A 14 906 906 HOH HOH . 
F 6 HOH A 15 907 907 HOH HOH . 
F 6 HOH A 16 908 908 HOH HOH . 
F 6 HOH A 17 909 909 HOH HOH . 
F 6 HOH A 18 910 910 HOH HOH . 
F 6 HOH A 19 911 911 HOH HOH . 
F 6 HOH A 20 912 912 HOH HOH . 
F 6 HOH A 21 913 913 HOH HOH . 
F 6 HOH A 22 914 914 HOH HOH . 
F 6 HOH A 23 915 915 HOH HOH . 
F 6 HOH A 24 916 916 HOH HOH . 
F 6 HOH A 25 917 917 HOH HOH . 
F 6 HOH A 26 918 918 HOH HOH . 
F 6 HOH A 27 919 919 HOH HOH . 
F 6 HOH A 28 920 920 HOH HOH . 
F 6 HOH A 29 921 921 HOH HOH . 
F 6 HOH A 30 922 922 HOH HOH . 
F 6 HOH A 31 923 923 HOH HOH . 
F 6 HOH A 32 924 924 HOH HOH . 
F 6 HOH A 33 925 925 HOH HOH . 
F 6 HOH A 34 926 926 HOH HOH . 
F 6 HOH A 35 927 927 HOH HOH . 
F 6 HOH A 36 928 928 HOH HOH . 
F 6 HOH A 37 929 929 HOH HOH . 
F 6 HOH A 38 930 930 HOH HOH . 
F 6 HOH A 39 931 931 HOH HOH . 
F 6 HOH A 40 932 932 HOH HOH . 
F 6 HOH A 41 933 933 HOH HOH . 
F 6 HOH A 42 934 934 HOH HOH . 
F 6 HOH A 43 935 935 HOH HOH . 
F 6 HOH A 44 936 936 HOH HOH . 
F 6 HOH A 45 937 937 HOH HOH . 
F 6 HOH A 46 938 938 HOH HOH . 
F 6 HOH A 47 939 939 HOH HOH . 
F 6 HOH A 48 940 940 HOH HOH . 
F 6 HOH A 49 941 941 HOH HOH . 
F 6 HOH A 50 942 942 HOH HOH . 
F 6 HOH A 51 943 943 HOH HOH . 
F 6 HOH A 52 944 944 HOH HOH . 
F 6 HOH A 53 945 945 HOH HOH . 
F 6 HOH A 54 946 946 HOH HOH . 
F 6 HOH A 55 947 947 HOH HOH . 
F 6 HOH A 56 948 948 HOH HOH . 
F 6 HOH A 57 949 949 HOH HOH . 
F 6 HOH A 58 950 950 HOH HOH . 
F 6 HOH A 59 951 951 HOH HOH . 
F 6 HOH A 60 952 952 HOH HOH . 
F 6 HOH A 61 953 953 HOH HOH . 
F 6 HOH A 62 954 954 HOH HOH . 
F 6 HOH A 63 955 955 HOH HOH . 
F 6 HOH A 64 956 956 HOH HOH . 
F 6 HOH A 65 957 957 HOH HOH . 
F 6 HOH A 66 958 958 HOH HOH . 
F 6 HOH A 67 959 959 HOH HOH . 
F 6 HOH A 68 960 960 HOH HOH . 
F 6 HOH A 69 961 961 HOH HOH . 
F 6 HOH A 70 962 962 HOH HOH . 
F 6 HOH A 71 963 963 HOH HOH . 
F 6 HOH A 72 964 964 HOH HOH . 
F 6 HOH A 73 965 965 HOH HOH . 
F 6 HOH A 74 966 966 HOH HOH . 
F 6 HOH A 75 967 967 HOH HOH . 
F 6 HOH A 76 968 968 HOH HOH . 
F 6 HOH A 77 969 969 HOH HOH . 
F 6 HOH A 78 970 970 HOH HOH . 
F 6 HOH A 79 971 971 HOH HOH . 
F 6 HOH A 80 972 972 HOH HOH . 
F 6 HOH A 81 973 973 HOH HOH . 
F 6 HOH A 82 974 974 HOH HOH . 
F 6 HOH A 83 975 975 HOH HOH . 
F 6 HOH A 84 976 976 HOH HOH . 
F 6 HOH A 85 977 977 HOH HOH . 
F 6 HOH A 86 978 978 HOH HOH . 
F 6 HOH A 87 979 979 HOH HOH . 
F 6 HOH A 88 980 980 HOH HOH . 
F 6 HOH A 89 981 981 HOH HOH . 
F 6 HOH A 90 982 982 HOH HOH . 
F 6 HOH A 91 983 983 HOH HOH . 
F 6 HOH A 92 984 984 HOH HOH . 
F 6 HOH A 93 985 985 HOH HOH . 
F 6 HOH A 94 986 986 HOH HOH . 
F 6 HOH A 95 987 987 HOH HOH . 
F 6 HOH A 96 988 988 HOH HOH . 
F 6 HOH A 97 989 989 HOH HOH . 
F 6 HOH A 98 990 990 HOH HOH . 
F 6 HOH A 99 991 991 HOH HOH . 
F 6 HOH A 100 992 992 HOH HOH . 
F 6 HOH A 101 993 993 HOH HOH . 
F 6 HOH A 102 994 994 HOH HOH . 
F 6 HOH A 103 995 995 HOH HOH . 
F 6 HOH A 104 996 996 HOH HOH . 
F 6 HOH A 105 997 997 HOH HOH . 
F 6 HOH A 106 998 998 HOH HOH . 
F 6 HOH A 107 999 999 HOH HOH . 
F 6 HOH A 108 1000 1000 HOH HOH . 
F 6 HOH A 109 1001 1001 HOH HOH . 
F 6 HOH A 110 1002 1002 HOH HOH . 
F 6 HOH A 111 1003 1003 HOH HOH . 
F 6 HOH A 112 1004 1004 HOH HOH . 
F 6 HOH A 113 1005 1005 HOH HOH . 
F 6 HOH A 114 1006 1006 HOH HOH . 
F 6 HOH A 115 1007 1007 HOH HOH . 
F 6 HOH A 116 1008 1008 HOH HOH . 
F 6 HOH A 117 1009 1009 HOH HOH . 
F 6 HOH A 118 1010 1010 HOH HOH . 
F 6 HOH A 119 1011 1011 HOH HOH . 
F 6 HOH A 120 1012 1012 HOH HOH . 
F 6 HOH A 121 1013 1013 HOH HOH . 
F 6 HOH A 122 1014 1014 HOH HOH . 
F 6 HOH A 123 1015 1015 HOH HOH . 
F 6 HOH A 124 1016 1016 HOH HOH . 
F 6 HOH A 125 1017 1017 HOH HOH . 
F 6 HOH A 126 1018 1018 HOH HOH . 
F 6 HOH A 127 1019 1019 HOH HOH . 
F 6 HOH A 128 1020 1020 HOH HOH . 
F 6 HOH A 129 1021 1021 HOH HOH . 
F 6 HOH A 130 1022 1022 HOH HOH . 
F 6 HOH A 131 1023 1023 HOH HOH . 
F 6 HOH A 132 1024 1024 HOH HOH . 
F 6 HOH A 133 1025 1025 HOH HOH . 
F 6 HOH A 134 1026 1026 HOH HOH . 
F 6 HOH A 135 1027 1027 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 17.756 23.875 18.3 1 75.16 ? C1 GOL 892 A 1 
HETATM 2 O O1 GOL . . . E 5 17.842 23.946 16.889 1 73.08 ? O1 GOL 892 A 1 
HETATM 3 C C2 GOL . . . E 5 16.805 22.731 18.636 1 76.01 ? C2 GOL 892 A 1 
HETATM 4 O O2 GOL . . . E 5 16.611 22.033 17.431 1 77.24 ? O2 GOL 892 A 1 
HETATM 5 C C3 GOL . . . E 5 17.369 21.753 19.673 1 77.65 ? C3 GOL 892 A 1 
HETATM 6 O O3 GOL . . . E 5 17.231 22.24 20.995 1 78.69 ? O3 GOL 892 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#