data_3K8Y # _model_server_result.job_id hw5HTL7fdsEVfXfqk2hgkQ _model_server_result.datetime_utc '2024-12-06 17:02:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":168}' # _entry.id 3K8Y # _exptl.entry_id 3K8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3K8Y _cell.length_a 88.475 _cell.length_b 88.475 _cell.length_c 134.906 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 A O ASP 107 A ASP 107 1_555 E CA CA . A CA 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 A O TYR 137 A TYR 137 1_555 E CA CA . A CA 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc7 C CA CA . A CA 167 1_555 H O HOH . A HOH 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 C CA CA . A CA 167 1_555 H O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 D MG MG . A MG 168 1_555 H O HOH . A HOH 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc10 D MG MG . A MG 168 1_555 H O HOH . A HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc11 D MG MG . A MG 168 1_555 B O2G GNP . A GNP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc12 D MG MG . A MG 168 1_555 B O2B GNP . A GNP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc13 E CA CA . A CA 169 1_555 H O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc14 E CA CA . A CA 169 1_555 H O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc15 E CA CA . A CA 169 1_555 H O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc16 E CA CA . A CA 169 1_555 G O ACT . A ACT 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc17 E CA CA . A CA 169 1_555 G OXT ACT . A ACT 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc18 F MG MG . A MG 170 1_555 H O HOH . A HOH 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc19 F MG MG . A MG 170 1_555 H O HOH . A HOH 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K8Y _atom_sites.fract_transf_matrix[1][1] 0.011303 _atom_sites.fract_transf_matrix[1][2] 0.006526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 528 528 GNP GNP . C 3 CA A 1 167 1 CA CA . D 4 MG A 1 168 2 MG MG . E 3 CA A 1 169 3 CA CA . F 4 MG A 1 170 4 MG MG . G 5 ACT A 1 719 719 ACT ACT . H 6 HOH A 1 171 171 HOH HOH . H 6 HOH A 2 172 2 HOH HOH . H 6 HOH A 3 173 3 HOH HOH . H 6 HOH A 4 174 174 HOH HOH . H 6 HOH A 5 175 175 HOH HOH . H 6 HOH A 6 176 176 HOH HOH . H 6 HOH A 7 177 6 HOH HOH . H 6 HOH A 8 178 66 HOH HOH . H 6 HOH A 9 179 24 HOH HOH . H 6 HOH A 10 180 1 HOH HOH . H 6 HOH A 11 181 35 HOH HOH . H 6 HOH A 12 182 48 HOH HOH . H 6 HOH A 13 183 183 HOH HOH . H 6 HOH A 14 184 10 HOH HOH . H 6 HOH A 15 185 185 HOH HOH . H 6 HOH A 16 186 186 HOH HOH . H 6 HOH A 17 187 187 HOH HOH . H 6 HOH A 18 188 188 HOH HOH . H 6 HOH A 19 189 189 HOH HOH . H 6 HOH A 20 190 190 HOH HOH . H 6 HOH A 21 191 4 HOH HOH . H 6 HOH A 22 192 5 HOH HOH . H 6 HOH A 23 193 97 HOH HOH . H 6 HOH A 24 194 194 HOH HOH . H 6 HOH A 25 195 38 HOH HOH . H 6 HOH A 26 196 196 HOH HOH . H 6 HOH A 27 197 197 HOH HOH . H 6 HOH A 28 198 23 HOH HOH . H 6 HOH A 29 199 199 HOH HOH . H 6 HOH A 30 200 51 HOH HOH . H 6 HOH A 31 201 37 HOH HOH . H 6 HOH A 32 202 202 HOH HOH . H 6 HOH A 33 203 20 HOH HOH . H 6 HOH A 34 204 52 HOH HOH . H 6 HOH A 35 205 205 HOH HOH . H 6 HOH A 36 206 60 HOH HOH . H 6 HOH A 37 207 16 HOH HOH . H 6 HOH A 38 208 7 HOH HOH . H 6 HOH A 39 209 32 HOH HOH . H 6 HOH A 40 210 72 HOH HOH . H 6 HOH A 41 211 21 HOH HOH . H 6 HOH A 42 212 12 HOH HOH . H 6 HOH A 43 213 45 HOH HOH . H 6 HOH A 44 214 33 HOH HOH . H 6 HOH A 45 215 78 HOH HOH . H 6 HOH A 46 216 216 HOH HOH . H 6 HOH A 47 217 69 HOH HOH . H 6 HOH A 48 218 29 HOH HOH . H 6 HOH A 49 219 89 HOH HOH . H 6 HOH A 50 220 47 HOH HOH . H 6 HOH A 51 221 26 HOH HOH . H 6 HOH A 52 222 63 HOH HOH . H 6 HOH A 53 223 223 HOH HOH . H 6 HOH A 54 224 43 HOH HOH . H 6 HOH A 55 225 225 HOH HOH . H 6 HOH A 56 226 226 HOH HOH . H 6 HOH A 57 227 59 HOH HOH . H 6 HOH A 58 228 79 HOH HOH . H 6 HOH A 59 229 57 HOH HOH . H 6 HOH A 60 230 230 HOH HOH . H 6 HOH A 61 231 14 HOH HOH . H 6 HOH A 62 232 82 HOH HOH . H 6 HOH A 63 233 128 HOH HOH . H 6 HOH A 64 234 36 HOH HOH . H 6 HOH A 65 235 100 HOH HOH . H 6 HOH A 66 236 104 HOH HOH . H 6 HOH A 67 237 39 HOH HOH . H 6 HOH A 68 238 80 HOH HOH . H 6 HOH A 69 239 160 HOH HOH . H 6 HOH A 70 240 17 HOH HOH . H 6 HOH A 71 241 41 HOH HOH . H 6 HOH A 72 242 158 HOH HOH . H 6 HOH A 73 243 46 HOH HOH . H 6 HOH A 74 244 119 HOH HOH . H 6 HOH A 75 245 34 HOH HOH . H 6 HOH A 76 246 15 HOH HOH . H 6 HOH A 77 247 28 HOH HOH . H 6 HOH A 78 248 84 HOH HOH . H 6 HOH A 79 249 11 HOH HOH . H 6 HOH A 80 250 152 HOH HOH . H 6 HOH A 81 251 50 HOH HOH . H 6 HOH A 82 252 19 HOH HOH . H 6 HOH A 83 253 42 HOH HOH . H 6 HOH A 84 254 254 HOH HOH . H 6 HOH A 85 255 22 HOH HOH . H 6 HOH A 86 256 73 HOH HOH . H 6 HOH A 87 257 30 HOH HOH . H 6 HOH A 88 258 9 HOH HOH . H 6 HOH A 89 259 58 HOH HOH . H 6 HOH A 90 260 76 HOH HOH . H 6 HOH A 91 261 156 HOH HOH . H 6 HOH A 92 262 53 HOH HOH . H 6 HOH A 93 263 263 HOH HOH . H 6 HOH A 94 264 31 HOH HOH . H 6 HOH A 95 265 18 HOH HOH . H 6 HOH A 96 266 115 HOH HOH . H 6 HOH A 97 267 149 HOH HOH . H 6 HOH A 98 268 142 HOH HOH . H 6 HOH A 99 269 77 HOH HOH . H 6 HOH A 100 270 270 HOH HOH . H 6 HOH A 101 271 140 HOH HOH . H 6 HOH A 102 272 54 HOH HOH . H 6 HOH A 103 273 108 HOH HOH . H 6 HOH A 104 274 116 HOH HOH . H 6 HOH A 105 275 65 HOH HOH . H 6 HOH A 106 276 143 HOH HOH . H 6 HOH A 107 277 153 HOH HOH . H 6 HOH A 108 278 99 HOH HOH . H 6 HOH A 109 279 74 HOH HOH . H 6 HOH A 110 280 27 HOH HOH . H 6 HOH A 111 281 129 HOH HOH . H 6 HOH A 112 282 98 HOH HOH . H 6 HOH A 113 283 91 HOH HOH . H 6 HOH A 114 284 137 HOH HOH . H 6 HOH A 115 285 138 HOH HOH . H 6 HOH A 116 286 40 HOH HOH . H 6 HOH A 117 287 44 HOH HOH . H 6 HOH A 118 288 25 HOH HOH . H 6 HOH A 119 289 94 HOH HOH . H 6 HOH A 120 290 87 HOH HOH . H 6 HOH A 121 291 139 HOH HOH . H 6 HOH A 122 292 113 HOH HOH . H 6 HOH A 123 293 49 HOH HOH . H 6 HOH A 124 294 147 HOH HOH . H 6 HOH A 125 295 68 HOH HOH . H 6 HOH A 126 296 90 HOH HOH . H 6 HOH A 127 297 96 HOH HOH . H 6 HOH A 128 298 120 HOH HOH . H 6 HOH A 129 299 141 HOH HOH . H 6 HOH A 130 300 86 HOH HOH . H 6 HOH A 131 301 103 HOH HOH . H 6 HOH A 132 302 71 HOH HOH . H 6 HOH A 133 303 122 HOH HOH . H 6 HOH A 134 304 155 HOH HOH . H 6 HOH A 135 305 111 HOH HOH . H 6 HOH A 136 306 8 HOH HOH . H 6 HOH A 137 307 126 HOH HOH . H 6 HOH A 138 308 101 HOH HOH . H 6 HOH A 139 309 162 HOH HOH . H 6 HOH A 140 316 316 HOH HOH . H 6 HOH A 141 324 324 HOH HOH . H 6 HOH A 142 332 332 HOH HOH . H 6 HOH A 143 333 333 HOH HOH . H 6 HOH A 144 342 342 HOH HOH . H 6 HOH A 145 343 343 HOH HOH . H 6 HOH A 146 364 364 HOH HOH . H 6 HOH A 147 365 365 HOH HOH . H 6 HOH A 148 366 366 HOH HOH . H 6 HOH A 149 367 367 HOH HOH . H 6 HOH A 150 368 368 HOH HOH . H 6 HOH A 151 369 369 HOH HOH . H 6 HOH A 152 370 370 HOH HOH . H 6 HOH A 153 371 371 HOH HOH . H 6 HOH A 154 372 372 HOH HOH . H 6 HOH A 155 373 373 HOH HOH . H 6 HOH A 156 374 374 HOH HOH . H 6 HOH A 157 375 375 HOH HOH . H 6 HOH A 158 376 376 HOH HOH . H 6 HOH A 159 377 377 HOH HOH . H 6 HOH A 160 378 378 HOH HOH . H 6 HOH A 161 379 379 HOH HOH . H 6 HOH A 162 380 380 HOH HOH . H 6 HOH A 163 381 381 HOH HOH . H 6 HOH A 164 382 382 HOH HOH . H 6 HOH A 165 383 383 HOH HOH . H 6 HOH A 166 384 384 HOH HOH . H 6 HOH A 167 385 385 HOH HOH . H 6 HOH A 168 386 386 HOH HOH . H 6 HOH A 169 387 387 HOH HOH . H 6 HOH A 170 388 388 HOH HOH . H 6 HOH A 171 389 389 HOH HOH . H 6 HOH A 172 390 390 HOH HOH . H 6 HOH A 173 391 391 HOH HOH . H 6 HOH A 174 392 392 HOH HOH . H 6 HOH A 175 393 393 HOH HOH . H 6 HOH A 176 394 394 HOH HOH . H 6 HOH A 177 395 395 HOH HOH . H 6 HOH A 178 396 396 HOH HOH . H 6 HOH A 179 397 397 HOH HOH . H 6 HOH A 180 398 398 HOH HOH . H 6 HOH A 181 399 399 HOH HOH . H 6 HOH A 182 400 400 HOH HOH . H 6 HOH A 183 700 700 HOH HOH . H 6 HOH A 184 701 701 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.17 _atom_site.Cartn_y 67.146 _atom_site.Cartn_z -68.084 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 168 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #