data_3K9B # _model_server_result.job_id sFbS-AuYH7mj8E1N_r6tkg _model_server_result.datetime_utc '2024-11-14 09:01:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":193}' # _entry.id 3K9B # _exptl.entry_id 3K9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'cyclohexyl (S)-methylphosphonofluoridoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K9B _cell.length_a 55.61 _cell.length_b 179.88 _cell.length_c 200.06 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,D,G 2 1 B,E,H 3 1 C,F,I 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 1087 1_555 A SG CYS 93 A CYS 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.154 ? disulf ? disulf2 A SG CYS 251 A CYS 1274 1_555 A SG CYS 262 A CYS 1285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 64 B CYS 2087 1_555 B SG CYS 93 B CYS 2116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.866 ? disulf ? disulf4 B SG CYS 251 B CYS 2274 1_555 B SG CYS 262 B CYS 2285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 C SG CYS 64 C CYS 3087 1_555 C SG CYS 93 C CYS 3116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.83 ? disulf ? disulf6 C SG CYS 251 C CYS 3274 1_555 C SG CYS 262 C CYS 3285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 D P1 WW2 . A WW2 193 1_555 A OG SER 198 A SER 1221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 E P1 WW2 . B WW2 194 1_555 B OG SER 198 B SER 2221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale3 F P1 WW2 . C WW2 195 1_555 C OG SER 198 C SER 3221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C7 H14 F O2 P' _chem_comp.formula_weight 180.157 _chem_comp.id WW2 _chem_comp.mon_nstd_flag . _chem_comp.name 'cyclohexyl (S)-methylphosphonofluoridoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cyclosarin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 WW2 sing 376 n n C1 C6 WW2 sing 377 n n C1 H1 WW2 sing 378 n n C1 H1A WW2 sing 379 n n P1 F1 WW2 sing 380 n n O1 P1 WW2 doub 381 n n O2 P1 WW2 sing 382 n n P1 C7 WW2 sing 383 n n C2 C3 WW2 sing 384 n n C2 H2 WW2 sing 385 n n C2 H2A WW2 sing 386 n n O2 C6 WW2 sing 387 n n C3 C4 WW2 sing 388 n n C3 H3 WW2 sing 389 n n C3 H3A WW2 sing 390 n n C5 C4 WW2 sing 391 n n C4 H4 WW2 sing 392 n n C4 H4A WW2 sing 393 n n C6 C5 WW2 sing 394 n n C5 H5 WW2 sing 395 n n C5 H5A WW2 sing 396 n n C6 H6 WW2 sing 397 n n C7 H7 WW2 sing 398 n n C7 H7A WW2 sing 399 n n C7 H7B WW2 sing 400 n n # _atom_sites.entry_id 3K9B _atom_sites.fract_transf_matrix[1][1] 0.017982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 WW2 A 1 193 193 WW2 WW2 . E 2 WW2 B 1 194 194 WW2 WW2 . F 2 WW2 C 1 195 195 WW2 WW2 . G 3 HOH A 1 6 6 HOH HOH . G 3 HOH A 2 10 10 HOH HOH . G 3 HOH A 3 12 12 HOH HOH . G 3 HOH A 4 18 18 HOH HOH . G 3 HOH A 5 19 19 HOH HOH . G 3 HOH A 6 25 25 HOH HOH . G 3 HOH A 7 29 29 HOH HOH . G 3 HOH A 8 30 30 HOH HOH . G 3 HOH A 9 38 38 HOH HOH . G 3 HOH A 10 49 49 HOH HOH . G 3 HOH A 11 59 59 HOH HOH . G 3 HOH A 12 60 60 HOH HOH . G 3 HOH A 13 62 62 HOH HOH . G 3 HOH A 14 64 64 HOH HOH . G 3 HOH A 15 66 66 HOH HOH . G 3 HOH A 16 67 67 HOH HOH . G 3 HOH A 17 74 74 HOH HOH . G 3 HOH A 18 75 75 HOH HOH . G 3 HOH A 19 82 82 HOH HOH . G 3 HOH A 20 89 89 HOH HOH . G 3 HOH A 21 91 91 HOH HOH . G 3 HOH A 22 93 93 HOH HOH . G 3 HOH A 23 94 94 HOH HOH . H 3 HOH B 1 2 2 HOH HOH . H 3 HOH B 2 8 8 HOH HOH . H 3 HOH B 3 13 13 HOH HOH . H 3 HOH B 4 22 22 HOH HOH . H 3 HOH B 5 24 24 HOH HOH . H 3 HOH B 6 28 28 HOH HOH . H 3 HOH B 7 31 31 HOH HOH . H 3 HOH B 8 33 33 HOH HOH . H 3 HOH B 9 34 34 HOH HOH . H 3 HOH B 10 46 46 HOH HOH . H 3 HOH B 11 53 53 HOH HOH . H 3 HOH B 12 57 57 HOH HOH . H 3 HOH B 13 63 63 HOH HOH . H 3 HOH B 14 76 76 HOH HOH . H 3 HOH B 15 77 77 HOH HOH . H 3 HOH B 16 79 79 HOH HOH . H 3 HOH B 17 84 84 HOH HOH . H 3 HOH B 18 85 85 HOH HOH . H 3 HOH B 19 98 98 HOH HOH . I 3 HOH C 1 3 3 HOH HOH . I 3 HOH C 2 4 4 HOH HOH . I 3 HOH C 3 5 5 HOH HOH . I 3 HOH C 4 7 7 HOH HOH . I 3 HOH C 5 14 14 HOH HOH . I 3 HOH C 6 16 16 HOH HOH . I 3 HOH C 7 17 17 HOH HOH . I 3 HOH C 8 20 20 HOH HOH . I 3 HOH C 9 21 21 HOH HOH . I 3 HOH C 10 23 23 HOH HOH . I 3 HOH C 11 26 26 HOH HOH . I 3 HOH C 12 42 42 HOH HOH . I 3 HOH C 13 44 44 HOH HOH . I 3 HOH C 14 54 54 HOH HOH . I 3 HOH C 15 55 55 HOH HOH . I 3 HOH C 16 56 56 HOH HOH . I 3 HOH C 17 58 58 HOH HOH . I 3 HOH C 18 61 61 HOH HOH . I 3 HOH C 19 69 69 HOH HOH . I 3 HOH C 20 71 71 HOH HOH . I 3 HOH C 21 78 78 HOH HOH . I 3 HOH C 22 87 87 HOH HOH . I 3 HOH C 23 92 92 HOH HOH . I 3 HOH C 24 99 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WW2 . . . D 2 11.952 91.024 44.801 0.8 64.84 ? C1 WW2 193 A 1 HETATM 2 O O1 WW2 . . . D 2 7.581 92.887 46.304 0.8 64.84 ? O1 WW2 193 A 1 HETATM 3 P P1 WW2 . . . D 2 9.022 92.93 46.564 0.8 64.84 ? P1 WW2 193 A 1 HETATM 4 C C2 WW2 . . . D 2 13.218 90.117 45.155 0.8 64.84 ? C2 WW2 193 A 1 HETATM 5 O O2 WW2 . . . D 2 9.719 91.84 45.503 0.8 64.84 ? O2 WW2 193 A 1 HETATM 6 C C3 WW2 . . . D 2 12.813 88.61 45.48 0.8 64.84 ? C3 WW2 193 A 1 HETATM 7 C C4 WW2 . . . D 2 11.637 88.53 46.549 0.8 64.84 ? C4 WW2 193 A 1 HETATM 8 C C5 WW2 . . . D 2 10.405 89.419 46.102 0.8 64.84 ? C5 WW2 193 A 1 HETATM 9 C C6 WW2 . . . D 2 10.826 90.958 45.937 0.8 64.84 ? C6 WW2 193 A 1 HETATM 10 C C7 WW2 . . . D 2 9.207 92.559 48.318 0.8 64.84 ? C7 WW2 193 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #