data_3K9G # _model_server_result.job_id GfHkqzNgCK_BKDKkIEJnXw _model_server_result.datetime_utc '2024-12-10 19:01:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":248}' # _entry.id 3K9G # _exptl.entry_id 3K9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K9G _cell.length_a 55.81 _cell.length_b 55.81 _cell.length_c 200.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 200.9 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 120 A HIS 99 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 A OG SER 123 A SER 102 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 O O HOH . A HOH 267 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc4 O O HOH . A HOH 282 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc5 B NA NA . A NA 300 1_555 O O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K9G _atom_sites.fract_transf_matrix[1][1] 0.017918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 300 300 NA NA . C 3 IOD A 1 247 1 IOD IOD . D 3 IOD A 1 248 2 IOD IOD . E 3 IOD A 1 249 3 IOD IOD . F 3 IOD A 1 250 4 IOD IOD . G 3 IOD A 1 251 5 IOD IOD . H 3 IOD A 1 252 6 IOD IOD . I 3 IOD A 1 253 7 IOD IOD . J 3 IOD A 1 254 8 IOD IOD . K 3 IOD A 1 255 9 IOD IOD . L 3 IOD A 1 256 10 IOD IOD . M 3 IOD A 1 257 11 IOD IOD . N 3 IOD A 1 258 12 IOD IOD . O 4 HOH A 1 259 8 HOH HOH . O 4 HOH A 2 260 11 HOH HOH . O 4 HOH A 3 261 16 HOH HOH . O 4 HOH A 4 262 20 HOH HOH . O 4 HOH A 5 263 21 HOH HOH . O 4 HOH A 6 264 23 HOH HOH . O 4 HOH A 7 265 24 HOH HOH . O 4 HOH A 8 266 26 HOH HOH . O 4 HOH A 9 267 27 HOH HOH . O 4 HOH A 10 268 30 HOH HOH . O 4 HOH A 11 269 31 HOH HOH . O 4 HOH A 12 270 32 HOH HOH . O 4 HOH A 13 271 38 HOH HOH . O 4 HOH A 14 272 40 HOH HOH . O 4 HOH A 15 273 41 HOH HOH . O 4 HOH A 16 274 51 HOH HOH . O 4 HOH A 17 275 53 HOH HOH . O 4 HOH A 18 276 56 HOH HOH . O 4 HOH A 19 277 57 HOH HOH . O 4 HOH A 20 278 58 HOH HOH . O 4 HOH A 21 279 61 HOH HOH . O 4 HOH A 22 280 64 HOH HOH . O 4 HOH A 23 281 65 HOH HOH . O 4 HOH A 24 282 66 HOH HOH . O 4 HOH A 25 283 72 HOH HOH . O 4 HOH A 26 284 73 HOH HOH . O 4 HOH A 27 285 74 HOH HOH . O 4 HOH A 28 286 83 HOH HOH . O 4 HOH A 29 287 86 HOH HOH . O 4 HOH A 30 288 91 HOH HOH . O 4 HOH A 31 289 93 HOH HOH . O 4 HOH A 32 290 94 HOH HOH . O 4 HOH A 33 291 99 HOH HOH . O 4 HOH A 34 292 109 HOH HOH . O 4 HOH A 35 293 111 HOH HOH . O 4 HOH A 36 294 112 HOH HOH . O 4 HOH A 37 295 113 HOH HOH . O 4 HOH A 38 296 114 HOH HOH . O 4 HOH A 39 297 115 HOH HOH . O 4 HOH A 40 298 116 HOH HOH . O 4 HOH A 41 299 120 HOH HOH . O 4 HOH A 42 301 122 HOH HOH . O 4 HOH A 43 302 124 HOH HOH . O 4 HOH A 44 303 125 HOH HOH . O 4 HOH A 45 304 126 HOH HOH . O 4 HOH A 46 305 127 HOH HOH . O 4 HOH A 47 306 128 HOH HOH . O 4 HOH A 48 307 129 HOH HOH . O 4 HOH A 49 308 131 HOH HOH . O 4 HOH A 50 309 132 HOH HOH . O 4 HOH A 51 310 133 HOH HOH . O 4 HOH A 52 311 134 HOH HOH . O 4 HOH A 53 312 135 HOH HOH . O 4 HOH A 54 313 136 HOH HOH . O 4 HOH A 55 314 137 HOH HOH . O 4 HOH A 56 315 138 HOH HOH . O 4 HOH A 57 316 140 HOH HOH . O 4 HOH A 58 317 141 HOH HOH . O 4 HOH A 59 318 142 HOH HOH . O 4 HOH A 60 319 143 HOH HOH . O 4 HOH A 61 320 145 HOH HOH . O 4 HOH A 62 321 146 HOH HOH . O 4 HOH A 63 322 148 HOH HOH . O 4 HOH A 64 323 149 HOH HOH . O 4 HOH A 65 324 150 HOH HOH . O 4 HOH A 66 325 151 HOH HOH . O 4 HOH A 67 326 152 HOH HOH . O 4 HOH A 68 327 153 HOH HOH . O 4 HOH A 69 328 154 HOH HOH . O 4 HOH A 70 329 155 HOH HOH . O 4 HOH A 71 330 156 HOH HOH . O 4 HOH A 72 331 157 HOH HOH . O 4 HOH A 73 332 158 HOH HOH . O 4 HOH A 74 333 159 HOH HOH . O 4 HOH A 75 334 161 HOH HOH . O 4 HOH A 76 335 162 HOH HOH . O 4 HOH A 77 336 163 HOH HOH . O 4 HOH A 78 337 164 HOH HOH . O 4 HOH A 79 338 165 HOH HOH . O 4 HOH A 80 339 166 HOH HOH . O 4 HOH A 81 340 167 HOH HOH . O 4 HOH A 82 341 168 HOH HOH . O 4 HOH A 83 342 169 HOH HOH . O 4 HOH A 84 343 171 HOH HOH . O 4 HOH A 85 344 172 HOH HOH . O 4 HOH A 86 345 173 HOH HOH . O 4 HOH A 87 346 174 HOH HOH . O 4 HOH A 88 347 175 HOH HOH . O 4 HOH A 89 348 176 HOH HOH . O 4 HOH A 90 349 177 HOH HOH . O 4 HOH A 91 350 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.127 _atom_site.Cartn_y 10.849 _atom_site.Cartn_z 72.678 _atom_site.occupancy 0.91 _atom_site.B_iso_or_equiv 35.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 248 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #