data_3K9N # _model_server_result.job_id q-4gYRkRprvtyGX87_IhAg _model_server_result.datetime_utc '2024-11-02 12:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 3K9N # _exptl.entry_id 3K9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3K9N _cell.length_a 38.423 _cell.length_b 38.423 _cell.length_c 191.749 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A O ARG 102 A ARG 102 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 A OD1 ASP 105 A ASP 105 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 E O HOH . A HOH 167 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 E O HOH . A HOH 171 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 B O2G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 B O2B GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 C CA CA . A CA 202 1_555 E O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 C CA CA . A CA 202 1_555 E O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc10 D MG MG . A MG 203 1_555 E O HOH . A HOH 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3K9N _atom_sites.fract_transf_matrix[1][1] 0.026026 _atom_sites.fract_transf_matrix[1][2] 0.015026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 CA A 1 202 202 CA CA . D 4 MG A 1 203 203 MG MG . E 5 HOH A 1 167 3 HOH HOH . E 5 HOH A 2 168 4 HOH HOH . E 5 HOH A 3 169 1 HOH HOH . E 5 HOH A 4 170 5 HOH HOH . E 5 HOH A 5 171 2 HOH HOH . E 5 HOH A 6 172 6 HOH HOH . E 5 HOH A 7 173 173 HOH HOH . E 5 HOH A 8 174 147 HOH HOH . E 5 HOH A 9 175 161 HOH HOH . E 5 HOH A 10 176 7 HOH HOH . E 5 HOH A 11 177 10 HOH HOH . E 5 HOH A 12 178 178 HOH HOH . E 5 HOH A 13 179 80 HOH HOH . E 5 HOH A 14 180 9 HOH HOH . E 5 HOH A 15 181 25 HOH HOH . E 5 HOH A 16 182 22 HOH HOH . E 5 HOH A 17 183 27 HOH HOH . E 5 HOH A 18 184 109 HOH HOH . E 5 HOH A 19 214 214 HOH HOH . E 5 HOH A 20 227 227 HOH HOH . E 5 HOH A 21 257 257 HOH HOH . E 5 HOH A 22 295 295 HOH HOH . E 5 HOH A 23 299 299 HOH HOH . E 5 HOH A 24 306 306 HOH HOH . E 5 HOH A 25 320 320 HOH HOH . E 5 HOH A 26 335 335 HOH HOH . E 5 HOH A 27 343 343 HOH HOH . E 5 HOH A 28 527 527 HOH HOH . E 5 HOH A 29 528 528 HOH HOH . E 5 HOH A 30 529 529 HOH HOH . E 5 HOH A 31 530 530 HOH HOH . E 5 HOH A 32 531 531 HOH HOH . E 5 HOH A 33 532 532 HOH HOH . E 5 HOH A 34 533 533 HOH HOH . E 5 HOH A 35 534 534 HOH HOH . E 5 HOH A 36 535 535 HOH HOH . E 5 HOH A 37 536 536 HOH HOH . E 5 HOH A 38 537 537 HOH HOH . E 5 HOH A 39 538 538 HOH HOH . E 5 HOH A 40 539 539 HOH HOH . E 5 HOH A 41 540 540 HOH HOH . E 5 HOH A 42 541 541 HOH HOH . E 5 HOH A 43 542 542 HOH HOH . E 5 HOH A 44 543 543 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 15.533 _atom_site.Cartn_y 0.299 _atom_site.Cartn_z 9.054 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #