data_3K9U # _model_server_result.job_id acnGa5gkCjbXcUhCWG9XkQ _model_server_result.datetime_utc '2024-12-26 22:09:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":162}' # _entry.id 3K9U # _exptl.entry_id 3K9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K9U _cell.length_a 70.28 _cell.length_b 70.577 _cell.length_c 87.671 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 100 A HIS 100 1_555 D NI NI . A NI 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 D NI NI . A NI 161 1_555 G O8A ACO . A ACO 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 D NI NI . A NI 161 1_555 B NE2 HIS 100 B HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 D NI NI . A NI 161 1_555 I O8A ACO . B ACO 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3K9U _atom_sites.fract_transf_matrix[1][1] 0.01423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 160 1 CL CL . D 3 NI A 1 161 1 NI NI . E 4 BR A 1 162 1 BR BR . F 2 CL A 1 163 1 CL CL . G 5 ACO A 1 164 162 ACO ACO . H 2 CL B 1 160 1 CL CL . I 5 ACO B 1 162 162 ACO ACO . J 6 HOH A 1 166 2 HOH HOH . J 6 HOH A 2 167 3 HOH HOH . J 6 HOH A 3 168 4 HOH HOH . J 6 HOH A 4 169 5 HOH HOH . J 6 HOH A 5 170 6 HOH HOH . J 6 HOH A 6 171 8 HOH HOH . J 6 HOH A 7 172 9 HOH HOH . J 6 HOH A 8 173 10 HOH HOH . J 6 HOH A 9 174 12 HOH HOH . J 6 HOH A 10 175 13 HOH HOH . J 6 HOH A 11 176 22 HOH HOH . J 6 HOH A 12 177 26 HOH HOH . J 6 HOH A 13 178 27 HOH HOH . J 6 HOH A 14 179 28 HOH HOH . J 6 HOH A 15 180 29 HOH HOH . J 6 HOH A 16 181 30 HOH HOH . J 6 HOH A 17 182 32 HOH HOH . J 6 HOH A 18 183 33 HOH HOH . J 6 HOH A 19 184 45 HOH HOH . J 6 HOH A 20 185 46 HOH HOH . J 6 HOH A 21 186 47 HOH HOH . J 6 HOH A 22 187 48 HOH HOH . J 6 HOH A 23 188 50 HOH HOH . J 6 HOH A 24 189 51 HOH HOH . J 6 HOH A 25 190 53 HOH HOH . J 6 HOH A 26 191 54 HOH HOH . J 6 HOH A 27 192 55 HOH HOH . J 6 HOH A 28 193 59 HOH HOH . J 6 HOH A 29 194 61 HOH HOH . J 6 HOH A 30 195 62 HOH HOH . J 6 HOH A 31 196 64 HOH HOH . J 6 HOH A 32 197 65 HOH HOH . J 6 HOH A 33 198 66 HOH HOH . J 6 HOH A 34 199 67 HOH HOH . J 6 HOH A 35 200 68 HOH HOH . J 6 HOH A 36 201 75 HOH HOH . J 6 HOH A 37 202 78 HOH HOH . J 6 HOH A 38 203 79 HOH HOH . J 6 HOH A 39 204 86 HOH HOH . K 6 HOH B 1 161 14 HOH HOH . K 6 HOH B 2 163 15 HOH HOH . K 6 HOH B 3 164 17 HOH HOH . K 6 HOH B 4 165 1 HOH HOH . K 6 HOH B 5 166 20 HOH HOH . K 6 HOH B 6 167 21 HOH HOH . K 6 HOH B 7 168 23 HOH HOH . K 6 HOH B 8 169 24 HOH HOH . K 6 HOH B 9 170 31 HOH HOH . K 6 HOH B 10 171 34 HOH HOH . K 6 HOH B 11 172 35 HOH HOH . K 6 HOH B 12 173 36 HOH HOH . K 6 HOH B 13 174 37 HOH HOH . K 6 HOH B 14 175 38 HOH HOH . K 6 HOH B 15 176 39 HOH HOH . K 6 HOH B 16 177 40 HOH HOH . K 6 HOH B 17 178 42 HOH HOH . K 6 HOH B 18 179 49 HOH HOH . K 6 HOH B 19 180 57 HOH HOH . K 6 HOH B 20 181 58 HOH HOH . K 6 HOH B 21 182 60 HOH HOH . K 6 HOH B 22 183 63 HOH HOH . K 6 HOH B 23 184 69 HOH HOH . K 6 HOH B 24 185 70 HOH HOH . K 6 HOH B 25 186 72 HOH HOH . K 6 HOH B 26 187 73 HOH HOH . K 6 HOH B 27 188 74 HOH HOH . K 6 HOH B 28 189 76 HOH HOH . K 6 HOH B 29 190 77 HOH HOH . K 6 HOH B 30 191 80 HOH HOH . K 6 HOH B 31 192 81 HOH HOH . K 6 HOH B 32 193 82 HOH HOH . K 6 HOH B 33 194 83 HOH HOH . K 6 HOH B 34 195 84 HOH HOH . K 6 HOH B 35 196 85 HOH HOH . K 6 HOH B 36 197 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . I 5 27.423 -25.627 -13.862 1 18.57 ? N1A ACO 162 B 1 HETATM 2 C C2A ACO . . . I 5 28.45 -24.955 -14.421 1 20.97 ? C2A ACO 162 B 1 HETATM 3 N N3A ACO . . . I 5 29.76 -25.207 -14.13 1 21.88 ? N3A ACO 162 B 1 HETATM 4 C C4A ACO . . . I 5 30.13 -26.188 -13.297 1 18.26 ? C4A ACO 162 B 1 HETATM 5 C C5A ACO . . . I 5 29.056 -26.971 -12.685 1 15.77 ? C5A ACO 162 B 1 HETATM 6 C C6A ACO . . . I 5 27.654 -26.616 -12.997 1 18.45 ? C6A ACO 162 B 1 HETATM 7 N N6A ACO . . . I 5 26.633 -27.308 -12.454 1 17.69 ? N6A ACO 162 B 1 HETATM 8 N N7A ACO . . . I 5 29.645 -27.856 -11.878 1 18.93 ? N7A ACO 162 B 1 HETATM 9 C C8A ACO . . . I 5 30.999 -27.674 -11.999 1 15.2 ? C8A ACO 162 B 1 HETATM 10 N N9A ACO . . . I 5 31.284 -26.673 -12.826 1 17.7 ? N9A ACO 162 B 1 HETATM 11 C C1B ACO . . . I 5 32.649 -26.281 -13.225 1 21.28 ? C1B ACO 162 B 1 HETATM 12 C C2B ACO . . . I 5 32.892 -24.804 -13.088 1 24.19 ? C2B ACO 162 B 1 HETATM 13 O O2B ACO . . . I 5 33.971 -24.541 -13.963 1 24.41 ? O2B ACO 162 B 1 HETATM 14 C C3B ACO . . . I 5 33.295 -24.664 -11.645 1 23.44 ? C3B ACO 162 B 1 HETATM 15 O O3B ACO . . . I 5 34.033 -23.47 -11.477 1 24.9 ? O3B ACO 162 B 1 HETATM 16 P P3B ACO . . . I 5 33.41 -22.189 -10.674 1 22.56 ? P3B ACO 162 B 1 HETATM 17 O O7A ACO . . . I 5 33.315 -22.601 -9.242 1 20.72 ? O7A ACO 162 B 1 HETATM 18 O O8A ACO . . . I 5 32.062 -22.077 -11.366 1 25.01 ? O8A ACO 162 B 1 HETATM 19 O O9A ACO . . . I 5 34.456 -21.152 -11.061 1 27.01 ? O9A ACO 162 B 1 HETATM 20 C C4B ACO . . . I 5 34.061 -25.963 -11.404 1 21.24 ? C4B ACO 162 B 1 HETATM 21 O O4B ACO . . . I 5 33.618 -26.912 -12.387 1 19.37 ? O4B ACO 162 B 1 HETATM 22 C C5B ACO . . . I 5 33.82 -26.519 -10.028 1 21.88 ? C5B ACO 162 B 1 HETATM 23 O O5B ACO . . . I 5 34.731 -27.579 -9.754 1 23.35 ? O5B ACO 162 B 1 HETATM 24 P P1A ACO . . . I 5 34.303 -28.898 -8.967 1 26.12 ? P1A ACO 162 B 1 HETATM 25 O O1A ACO . . . I 5 33.223 -28.639 -7.93 1 23.67 ? O1A ACO 162 B 1 HETATM 26 O O2A ACO . . . I 5 35.55 -29.606 -8.529 1 26.15 ? O2A ACO 162 B 1 HETATM 27 O O3A ACO . . . I 5 33.65 -29.689 -10.226 1 24.57 ? O3A ACO 162 B 1 HETATM 28 P P2A ACO . . . I 5 32.685 -30.976 -10.04 1 24.29 ? P2A ACO 162 B 1 HETATM 29 O O4A ACO . . . I 5 31.298 -30.592 -10.461 1 25.96 ? O4A ACO 162 B 1 HETATM 30 O O5A ACO . . . I 5 32.886 -31.647 -8.709 1 22.08 ? O5A ACO 162 B 1 HETATM 31 O O6A ACO . . . I 5 33.241 -31.921 -11.211 1 26.76 ? O6A ACO 162 B 1 HETATM 32 C CBP ACO . . . I 5 32.666 -32.337 -13.586 1 18.85 ? CBP ACO 162 B 1 HETATM 33 C CCP ACO . . . I 5 33.462 -31.504 -12.579 1 23.68 ? CCP ACO 162 B 1 HETATM 34 C CDP ACO . . . I 5 33.008 -31.865 -14.961 1 20.06 ? CDP ACO 162 B 1 HETATM 35 C CEP ACO . . . I 5 33.047 -33.795 -13.462 1 20.44 ? CEP ACO 162 B 1 HETATM 36 C CAP ACO . . . I 5 31.16 -32.229 -13.345 1 20.54 ? CAP ACO 162 B 1 HETATM 37 O OAP ACO . . . I 5 30.749 -30.869 -13.363 1 21.04 ? OAP ACO 162 B 1 HETATM 38 C C9P ACO . . . I 5 30.328 -32.988 -14.342 1 20.56 ? C9P ACO 162 B 1 HETATM 39 O O9P ACO . . . I 5 30.142 -34.208 -14.24 1 23.66 ? O9P ACO 162 B 1 HETATM 40 N N8P ACO . . . I 5 29.82 -32.251 -15.319 1 23.29 ? N8P ACO 162 B 1 HETATM 41 C C7P ACO . . . I 5 29.077 -32.805 -16.447 1 24.43 ? C7P ACO 162 B 1 HETATM 42 C C6P ACO . . . I 5 29.889 -33.855 -17.201 1 25.64 ? C6P ACO 162 B 1 HETATM 43 C C5P ACO . . . I 5 31.131 -33.308 -17.902 1 27.21 ? C5P ACO 162 B 1 HETATM 44 O O5P ACO . . . I 5 31.101 -32.24 -18.493 1 27.66 ? O5P ACO 162 B 1 HETATM 45 N N4P ACO . . . I 5 32.196 -34.099 -17.9 1 27.53 ? N4P ACO 162 B 1 HETATM 46 C C3P ACO . . . I 5 33.378 -33.867 -18.719 1 31.99 ? C3P ACO 162 B 1 HETATM 47 C C2P ACO . . . I 5 33.371 -34.822 -19.923 1 34.2 ? C2P ACO 162 B 1 HETATM 48 S S1P ACO . . . I 5 34.814 -34.719 -20.948 1 36.99 ? S1P ACO 162 B 1 HETATM 49 C C ACO . . . I 5 35.6 -36.213 -20.665 1 39 ? C ACO 162 B 1 HETATM 50 O O ACO . . . I 5 34.953 -37.175 -20.299 1 39.77 ? O ACO 162 B 1 HETATM 51 C CH3 ACO . . . I 5 37.068 -36.434 -20.862 1 38.33 ? CH3 ACO 162 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #