data_3K9U # _model_server_result.job_id jXiKo7gSUWQwHzuEeG702Q _model_server_result.datetime_utc '2024-12-26 22:39:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":164}' # _entry.id 3K9U # _exptl.entry_id 3K9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K9U _cell.length_a 70.28 _cell.length_b 70.577 _cell.length_c 87.671 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 100 A HIS 100 1_555 D NI NI . A NI 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 D NI NI . A NI 161 1_555 G O8A ACO . A ACO 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 D NI NI . A NI 161 1_555 B NE2 HIS 100 B HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 D NI NI . A NI 161 1_555 I O8A ACO . B ACO 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3K9U _atom_sites.fract_transf_matrix[1][1] 0.01423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 160 1 CL CL . D 3 NI A 1 161 1 NI NI . E 4 BR A 1 162 1 BR BR . F 2 CL A 1 163 1 CL CL . G 5 ACO A 1 164 162 ACO ACO . H 2 CL B 1 160 1 CL CL . I 5 ACO B 1 162 162 ACO ACO . J 6 HOH A 1 166 2 HOH HOH . J 6 HOH A 2 167 3 HOH HOH . J 6 HOH A 3 168 4 HOH HOH . J 6 HOH A 4 169 5 HOH HOH . J 6 HOH A 5 170 6 HOH HOH . J 6 HOH A 6 171 8 HOH HOH . J 6 HOH A 7 172 9 HOH HOH . J 6 HOH A 8 173 10 HOH HOH . J 6 HOH A 9 174 12 HOH HOH . J 6 HOH A 10 175 13 HOH HOH . J 6 HOH A 11 176 22 HOH HOH . J 6 HOH A 12 177 26 HOH HOH . J 6 HOH A 13 178 27 HOH HOH . J 6 HOH A 14 179 28 HOH HOH . J 6 HOH A 15 180 29 HOH HOH . J 6 HOH A 16 181 30 HOH HOH . J 6 HOH A 17 182 32 HOH HOH . J 6 HOH A 18 183 33 HOH HOH . J 6 HOH A 19 184 45 HOH HOH . J 6 HOH A 20 185 46 HOH HOH . J 6 HOH A 21 186 47 HOH HOH . J 6 HOH A 22 187 48 HOH HOH . J 6 HOH A 23 188 50 HOH HOH . J 6 HOH A 24 189 51 HOH HOH . J 6 HOH A 25 190 53 HOH HOH . J 6 HOH A 26 191 54 HOH HOH . J 6 HOH A 27 192 55 HOH HOH . J 6 HOH A 28 193 59 HOH HOH . J 6 HOH A 29 194 61 HOH HOH . J 6 HOH A 30 195 62 HOH HOH . J 6 HOH A 31 196 64 HOH HOH . J 6 HOH A 32 197 65 HOH HOH . J 6 HOH A 33 198 66 HOH HOH . J 6 HOH A 34 199 67 HOH HOH . J 6 HOH A 35 200 68 HOH HOH . J 6 HOH A 36 201 75 HOH HOH . J 6 HOH A 37 202 78 HOH HOH . J 6 HOH A 38 203 79 HOH HOH . J 6 HOH A 39 204 86 HOH HOH . K 6 HOH B 1 161 14 HOH HOH . K 6 HOH B 2 163 15 HOH HOH . K 6 HOH B 3 164 17 HOH HOH . K 6 HOH B 4 165 1 HOH HOH . K 6 HOH B 5 166 20 HOH HOH . K 6 HOH B 6 167 21 HOH HOH . K 6 HOH B 7 168 23 HOH HOH . K 6 HOH B 8 169 24 HOH HOH . K 6 HOH B 9 170 31 HOH HOH . K 6 HOH B 10 171 34 HOH HOH . K 6 HOH B 11 172 35 HOH HOH . K 6 HOH B 12 173 36 HOH HOH . K 6 HOH B 13 174 37 HOH HOH . K 6 HOH B 14 175 38 HOH HOH . K 6 HOH B 15 176 39 HOH HOH . K 6 HOH B 16 177 40 HOH HOH . K 6 HOH B 17 178 42 HOH HOH . K 6 HOH B 18 179 49 HOH HOH . K 6 HOH B 19 180 57 HOH HOH . K 6 HOH B 20 181 58 HOH HOH . K 6 HOH B 21 182 60 HOH HOH . K 6 HOH B 22 183 63 HOH HOH . K 6 HOH B 23 184 69 HOH HOH . K 6 HOH B 24 185 70 HOH HOH . K 6 HOH B 25 186 72 HOH HOH . K 6 HOH B 26 187 73 HOH HOH . K 6 HOH B 27 188 74 HOH HOH . K 6 HOH B 28 189 76 HOH HOH . K 6 HOH B 29 190 77 HOH HOH . K 6 HOH B 30 191 80 HOH HOH . K 6 HOH B 31 192 81 HOH HOH . K 6 HOH B 32 193 82 HOH HOH . K 6 HOH B 33 194 83 HOH HOH . K 6 HOH B 34 195 84 HOH HOH . K 6 HOH B 35 196 85 HOH HOH . K 6 HOH B 36 197 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . G 5 26.437 -24.946 -7.393 1 21.12 ? N1A ACO 164 A 1 HETATM 2 C C2A ACO . . . G 5 27.134 -24.011 -6.703 1 22.95 ? C2A ACO 164 A 1 HETATM 3 N N3A ACO . . . G 5 26.941 -22.691 -6.878 1 24.34 ? N3A ACO 164 A 1 HETATM 4 C C4A ACO . . . G 5 26.009 -22.223 -7.728 1 20.55 ? C4A ACO 164 A 1 HETATM 5 C C5A ACO . . . G 5 25.236 -23.206 -8.483 1 21.31 ? C5A ACO 164 A 1 HETATM 6 C C6A ACO . . . G 5 25.492 -24.638 -8.259 1 19.48 ? C6A ACO 164 A 1 HETATM 7 N N6A ACO . . . G 5 24.818 -25.604 -8.931 1 21.44 ? N6A ACO 164 A 1 HETATM 8 N N7A ACO . . . G 5 24.404 -22.524 -9.249 1 20.76 ? N7A ACO 164 A 1 HETATM 9 C C8A ACO . . . G 5 24.629 -21.22 -9.022 1 20.79 ? C8A ACO 164 A 1 HETATM 10 N N9A ACO . . . G 5 25.574 -21.022 -8.092 1 21.06 ? N9A ACO 164 A 1 HETATM 11 C C1B ACO . . . G 5 26.052 -19.67 -7.656 1 21.34 ? C1B ACO 164 A 1 HETATM 12 C C2B ACO . . . G 5 27.56 -19.452 -7.794 1 20.85 ? C2B ACO 164 A 1 HETATM 13 O O2B ACO . . . G 5 28.041 -18.448 -6.862 1 25.06 ? O2B ACO 164 A 1 HETATM 14 C C3B ACO . . . G 5 27.731 -18.945 -9.196 1 23.55 ? C3B ACO 164 A 1 HETATM 15 O O3B ACO . . . G 5 28.941 -18.177 -9.34 1 24 ? O3B ACO 164 A 1 HETATM 16 P P3B ACO . . . G 5 30.257 -18.972 -9.892 1 22.96 ? P3B ACO 164 A 1 HETATM 17 O O7A ACO . . . G 5 29.985 -19.06 -11.339 1 20.13 ? O7A ACO 164 A 1 HETATM 18 O O8A ACO . . . G 5 30.23 -20.306 -9.156 1 21.93 ? O8A ACO 164 A 1 HETATM 19 O O9A ACO . . . G 5 31.351 -18.015 -9.449 1 24.33 ? O9A ACO 164 A 1 HETATM 20 C C4B ACO . . . G 5 26.44 -18.194 -9.466 1 22.74 ? C4B ACO 164 A 1 HETATM 21 O O4B ACO . . . G 5 25.49 -18.659 -8.497 1 22.63 ? O4B ACO 164 A 1 HETATM 22 C C5B ACO . . . G 5 25.886 -18.417 -10.857 1 22.39 ? C5B ACO 164 A 1 HETATM 23 O O5B ACO . . . G 5 24.952 -17.391 -11.224 1 22.16 ? O5B ACO 164 A 1 HETATM 24 P P1A ACO . . . G 5 23.588 -17.747 -12.004 1 20.66 ? P1A ACO 164 A 1 HETATM 25 O O1A ACO . . . G 5 23.863 -18.748 -13.117 1 21.49 ? O1A ACO 164 A 1 HETATM 26 O O2A ACO . . . G 5 22.862 -16.474 -12.349 1 21.12 ? O2A ACO 164 A 1 HETATM 27 O O3A ACO . . . G 5 22.804 -18.497 -10.794 1 20.63 ? O3A ACO 164 A 1 HETATM 28 P P2A ACO . . . G 5 21.453 -19.372 -11.018 1 19.5 ? P2A ACO 164 A 1 HETATM 29 O O4A ACO . . . G 5 21.8 -20.785 -10.611 1 17.13 ? O4A ACO 164 A 1 HETATM 30 O O5A ACO . . . G 5 20.83 -19.072 -12.376 1 18.44 ? O5A ACO 164 A 1 HETATM 31 O O6A ACO . . . G 5 20.478 -18.762 -9.922 1 18.27 ? O6A ACO 164 A 1 HETATM 32 C CBP ACO . . . G 5 19.95 -19.383 -7.679 1 19.04 ? CBP ACO 164 A 1 HETATM 33 C CCP ACO . . . G 5 20.889 -18.59 -8.57 1 18.22 ? CCP ACO 164 A 1 HETATM 34 C CDP ACO . . . G 5 20.316 -19.153 -6.226 1 16.68 ? CDP ACO 164 A 1 HETATM 35 C CEP ACO . . . G 5 18.545 -18.838 -7.921 1 18.57 ? CEP ACO 164 A 1 HETATM 36 C CAP ACO . . . G 5 19.995 -20.887 -8.037 1 19.13 ? CAP ACO 164 A 1 HETATM 37 O OAP ACO . . . G 5 21.328 -21.41 -7.977 1 24.45 ? OAP ACO 164 A 1 HETATM 38 C C9P ACO . . . G 5 19.108 -21.738 -7.172 1 19.27 ? C9P ACO 164 A 1 HETATM 39 O O9P ACO . . . G 5 17.919 -21.814 -7.423 1 19.14 ? O9P ACO 164 A 1 HETATM 40 N N8P ACO . . . G 5 19.681 -22.34 -6.157 1 21.63 ? N8P ACO 164 A 1 HETATM 41 C C7P ACO . . . G 5 18.974 -23.132 -5.176 1 24.6 ? C7P ACO 164 A 1 HETATM 42 C C6P ACO . . . G 5 17.907 -22.383 -4.393 1 25.14 ? C6P ACO 164 A 1 HETATM 43 C C5P ACO . . . G 5 18.404 -21.174 -3.629 1 28.25 ? C5P ACO 164 A 1 HETATM 44 O O5P ACO . . . G 5 19.443 -21.186 -2.985 1 30.8 ? O5P ACO 164 A 1 HETATM 45 N N4P ACO . . . G 5 17.608 -20.102 -3.656 1 30.37 ? N4P ACO 164 A 1 HETATM 46 C C3P ACO . . . G 5 17.889 -18.907 -2.863 1 30.14 ? C3P ACO 164 A 1 HETATM 47 C C2P ACO . . . G 5 17.188 -19.004 -1.516 1 31.95 ? C2P ACO 164 A 1 HETATM 48 S S1P ACO . . . G 5 17.247 -17.485 -0.614 1 33.48 ? S1P ACO 164 A 1 HETATM 49 C C ACO . . . G 5 15.784 -16.724 -0.994 0.7 34.14 ? C ACO 164 A 1 HETATM 50 O O ACO . . . G 5 14.959 -17.342 -1.656 0.7 33.49 ? O ACO 164 A 1 HETATM 51 C CH3 ACO . . . G 5 15.481 -15.322 -0.499 0.7 33.84 ? CH3 ACO 164 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #