data_3K9W # _model_server_result.job_id axHW3b7WST5juxRVOfmocw _model_server_result.datetime_utc '2024-11-28 22:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":168}' # _entry.id 3K9W # _exptl.entry_id 3K9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3K9W _cell.length_a 134.431 _cell.length_b 134.431 _cell.length_c 134.431 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 4 'crystal symmetry operation' 37_454 y-1/2,x+1/2,-z-1/2 0 1 0 1 0 0 0 0 -1 -67.2155 67.2155 -67.2155 5 'crystal symmetry operation' 42_454 -x-1/2,z+1/2,y-1/2 -1 0 0 0 0 1 0 1 0 -67.2155 67.2155 -67.2155 6 'crystal symmetry operation' 48_454 -z-1/2,-y+1/2,-x-1/2 0 0 -1 0 -1 0 -1 0 0 -67.2155 67.2155 -67.2155 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 56 n y N9 C4 ADE sing 57 n y N9 HN9 ADE sing 58 n n C8 N7 ADE doub 59 n y C8 H8 ADE sing 60 n n N7 C5 ADE sing 61 n y C5 C6 ADE sing 62 n y C5 C4 ADE doub 63 n y C6 N6 ADE sing 64 n n C6 N1 ADE doub 65 n y N6 HN61 ADE sing 66 n n N6 HN62 ADE sing 67 n n N1 C2 ADE sing 68 n y C2 N3 ADE doub 69 n y C2 H2 ADE sing 70 n n N3 C4 ADE sing 71 n y # _atom_sites.entry_id 3K9W _atom_sites.fract_transf_matrix[1][1] 0.007439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4PS A 1 167 167 4PS 4PS . C 3 ADE A 1 168 168 ADE ADE . D 4 PG4 A 1 169 169 PG4 PG4 . E 5 ACT A 1 170 170 ACT ACT . F 6 SO4 A 1 171 171 SO4 SO4 . G 7 HOH A 1 172 172 HOH HOH . G 7 HOH A 2 173 173 HOH HOH . G 7 HOH A 3 174 174 HOH HOH . G 7 HOH A 4 175 175 HOH HOH . G 7 HOH A 5 176 176 HOH HOH . G 7 HOH A 6 177 177 HOH HOH . G 7 HOH A 7 178 178 HOH HOH . G 7 HOH A 8 179 179 HOH HOH . G 7 HOH A 9 180 180 HOH HOH . G 7 HOH A 10 181 181 HOH HOH . G 7 HOH A 11 182 182 HOH HOH . G 7 HOH A 12 183 183 HOH HOH . G 7 HOH A 13 184 184 HOH HOH . G 7 HOH A 14 185 185 HOH HOH . G 7 HOH A 15 186 186 HOH HOH . G 7 HOH A 16 187 187 HOH HOH . G 7 HOH A 17 188 188 HOH HOH . G 7 HOH A 18 189 189 HOH HOH . G 7 HOH A 19 190 190 HOH HOH . G 7 HOH A 20 191 191 HOH HOH . G 7 HOH A 21 192 192 HOH HOH . G 7 HOH A 22 193 193 HOH HOH . G 7 HOH A 23 194 194 HOH HOH . G 7 HOH A 24 195 195 HOH HOH . G 7 HOH A 25 196 196 HOH HOH . G 7 HOH A 26 197 197 HOH HOH . G 7 HOH A 27 198 198 HOH HOH . G 7 HOH A 28 199 199 HOH HOH . G 7 HOH A 29 200 200 HOH HOH . G 7 HOH A 30 201 201 HOH HOH . G 7 HOH A 31 202 202 HOH HOH . G 7 HOH A 32 203 203 HOH HOH . G 7 HOH A 33 204 204 HOH HOH . G 7 HOH A 34 205 205 HOH HOH . G 7 HOH A 35 206 206 HOH HOH . G 7 HOH A 36 207 207 HOH HOH . G 7 HOH A 37 208 208 HOH HOH . G 7 HOH A 38 209 209 HOH HOH . G 7 HOH A 39 210 210 HOH HOH . G 7 HOH A 40 211 211 HOH HOH . G 7 HOH A 41 212 212 HOH HOH . G 7 HOH A 42 213 213 HOH HOH . G 7 HOH A 43 214 214 HOH HOH . G 7 HOH A 44 215 215 HOH HOH . G 7 HOH A 45 216 216 HOH HOH . G 7 HOH A 46 217 217 HOH HOH . G 7 HOH A 47 218 218 HOH HOH . G 7 HOH A 48 219 219 HOH HOH . G 7 HOH A 49 220 220 HOH HOH . G 7 HOH A 50 221 221 HOH HOH . G 7 HOH A 51 222 222 HOH HOH . G 7 HOH A 52 223 223 HOH HOH . G 7 HOH A 53 224 224 HOH HOH . G 7 HOH A 54 225 225 HOH HOH . G 7 HOH A 55 226 226 HOH HOH . G 7 HOH A 56 227 227 HOH HOH . G 7 HOH A 57 228 228 HOH HOH . G 7 HOH A 58 229 229 HOH HOH . G 7 HOH A 59 230 230 HOH HOH . G 7 HOH A 60 231 231 HOH HOH . G 7 HOH A 61 232 232 HOH HOH . G 7 HOH A 62 233 233 HOH HOH . G 7 HOH A 63 234 234 HOH HOH . G 7 HOH A 64 235 235 HOH HOH . G 7 HOH A 65 236 236 HOH HOH . G 7 HOH A 66 237 237 HOH HOH . G 7 HOH A 67 238 238 HOH HOH . G 7 HOH A 68 239 239 HOH HOH . G 7 HOH A 69 240 240 HOH HOH . G 7 HOH A 70 241 241 HOH HOH . G 7 HOH A 71 242 242 HOH HOH . G 7 HOH A 72 243 243 HOH HOH . G 7 HOH A 73 244 244 HOH HOH . G 7 HOH A 74 245 245 HOH HOH . G 7 HOH A 75 246 246 HOH HOH . G 7 HOH A 76 247 247 HOH HOH . G 7 HOH A 77 248 248 HOH HOH . G 7 HOH A 78 249 249 HOH HOH . G 7 HOH A 79 250 250 HOH HOH . G 7 HOH A 80 251 251 HOH HOH . G 7 HOH A 81 252 252 HOH HOH . G 7 HOH A 82 253 253 HOH HOH . G 7 HOH A 83 254 254 HOH HOH . G 7 HOH A 84 255 255 HOH HOH . G 7 HOH A 85 256 256 HOH HOH . G 7 HOH A 86 257 257 HOH HOH . G 7 HOH A 87 258 258 HOH HOH . G 7 HOH A 88 259 259 HOH HOH . G 7 HOH A 89 260 260 HOH HOH . G 7 HOH A 90 261 261 HOH HOH . G 7 HOH A 91 262 262 HOH HOH . G 7 HOH A 92 263 263 HOH HOH . G 7 HOH A 93 264 264 HOH HOH . G 7 HOH A 94 265 265 HOH HOH . G 7 HOH A 95 266 266 HOH HOH . G 7 HOH A 96 267 267 HOH HOH . G 7 HOH A 97 268 268 HOH HOH . G 7 HOH A 98 269 269 HOH HOH . G 7 HOH A 99 270 270 HOH HOH . G 7 HOH A 100 271 271 HOH HOH . G 7 HOH A 101 272 272 HOH HOH . G 7 HOH A 102 273 273 HOH HOH . G 7 HOH A 103 274 274 HOH HOH . G 7 HOH A 104 275 275 HOH HOH . G 7 HOH A 105 276 276 HOH HOH . G 7 HOH A 106 277 277 HOH HOH . G 7 HOH A 107 278 278 HOH HOH . G 7 HOH A 108 279 279 HOH HOH . G 7 HOH A 109 280 280 HOH HOH . G 7 HOH A 110 281 281 HOH HOH . G 7 HOH A 111 282 282 HOH HOH . G 7 HOH A 112 283 283 HOH HOH . G 7 HOH A 113 284 284 HOH HOH . G 7 HOH A 114 285 285 HOH HOH . G 7 HOH A 115 286 286 HOH HOH . G 7 HOH A 116 287 287 HOH HOH . G 7 HOH A 117 288 288 HOH HOH . G 7 HOH A 118 289 289 HOH HOH . G 7 HOH A 119 290 290 HOH HOH . G 7 HOH A 120 291 291 HOH HOH . G 7 HOH A 121 292 292 HOH HOH . G 7 HOH A 122 293 293 HOH HOH . G 7 HOH A 123 294 294 HOH HOH . G 7 HOH A 124 295 295 HOH HOH . G 7 HOH A 125 296 296 HOH HOH . G 7 HOH A 126 297 297 HOH HOH . G 7 HOH A 127 298 298 HOH HOH . G 7 HOH A 128 299 299 HOH HOH . G 7 HOH A 129 300 300 HOH HOH . G 7 HOH A 130 301 301 HOH HOH . G 7 HOH A 131 302 302 HOH HOH . G 7 HOH A 132 303 303 HOH HOH . G 7 HOH A 133 304 304 HOH HOH . G 7 HOH A 134 305 305 HOH HOH . G 7 HOH A 135 306 306 HOH HOH . G 7 HOH A 136 307 307 HOH HOH . G 7 HOH A 137 308 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 3 -22.235 39.366 -21.509 1 31.13 ? N9 ADE 168 A 1 HETATM 2 C C8 ADE . . . C 3 -21.412 38.449 -22.101 1 30.75 ? C8 ADE 168 A 1 HETATM 3 N N7 ADE . . . C 3 -20.64 38.965 -23.03 1 30.53 ? N7 ADE 168 A 1 HETATM 4 C C5 ADE . . . C 3 -20.978 40.309 -23.043 1 29.82 ? C5 ADE 168 A 1 HETATM 5 C C6 ADE . . . C 3 -20.516 41.404 -23.808 1 29.46 ? C6 ADE 168 A 1 HETATM 6 N N6 ADE . . . C 3 -19.574 41.286 -24.749 1 28.92 ? N6 ADE 168 A 1 HETATM 7 N N1 ADE . . . C 3 -21.066 42.621 -23.573 1 29.65 ? N1 ADE 168 A 1 HETATM 8 C C2 ADE . . . C 3 -22.019 42.731 -22.631 1 30.02 ? C2 ADE 168 A 1 HETATM 9 N N3 ADE . . . C 3 -22.53 41.771 -21.856 1 29.95 ? N3 ADE 168 A 1 HETATM 10 C C4 ADE . . . C 3 -21.963 40.577 -22.11 1 29.84 ? C4 ADE 168 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #