data_3K9Y # _model_server_result.job_id UduIdmTxaw6o-q5DpgrEfA _model_server_result.datetime_utc '2024-11-06 09:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3k9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":517}' # _entry.id 3K9Y # _exptl.entry_id 3K9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.44 _cell.angle_gamma 90 _cell.entry_id 3K9Y _cell.length_a 182.297 _cell.length_b 81.303 _cell.length_c 108.707 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3K9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 A,C,D,E 3 1 B,F 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -58.312187 0 91.743669 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 430 A CYS 462 1_555 C FE HEM . A HEM 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 B SG CYS 430 B CYS 462 1_555 F FE HEM . B HEM 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 3K9Y _atom_sites.fract_transf_matrix[1][1] 0.005486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003487 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 520 520 HEM HEM . D 3 CM5 A 1 516 504 CM5 CM5 . E 3 CM5 A 1 517 505 CM5 CM5 . F 2 HEM B 1 520 520 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . E 3 -3.004 -10.212 31.161 1 80.45 ? C7 CM5 517 A 1 HETATM 2 C C8 CM5 . . . E 3 -2.852 -9.443 29.846 1 79.1 ? C8 CM5 517 A 1 HETATM 3 C C9 CM5 . . . E 3 -4.101 -9.573 28.972 1 78.64 ? C9 CM5 517 A 1 HETATM 4 C C10 CM5 . . . E 3 -5.354 -9.198 29.766 1 81.28 ? C10 CM5 517 A 1 HETATM 5 C C11 CM5 . . . E 3 -5.484 -10.036 31.041 1 81.27 ? C11 CM5 517 A 1 HETATM 6 C C6 CM5 . . . E 3 -4.311 -11.003 31.227 1 80.9 ? C6 CM5 517 A 1 HETATM 7 C C5 CM5 . . . E 3 -4.322 -12.058 30.118 1 82.2 ? C5 CM5 517 A 1 HETATM 8 C C4 CM5 . . . E 3 -4.65 -13.467 30.617 1 84 ? C4 CM5 517 A 1 HETATM 9 C C3 CM5 . . . E 3 -3.495 -14.082 31.41 1 86.52 ? C3 CM5 517 A 1 HETATM 10 C C2 CM5 . . . E 3 -3.193 -15.481 30.869 1 88.31 ? C2 CM5 517 A 1 HETATM 11 C C1 CM5 . . . E 3 -3.033 -16.5 31.999 1 89.27 ? C1 CM5 517 A 1 HETATM 12 O O12 CM5 . . . E 3 -4.245 -16.63 32.761 1 89 ? O12 CM5 517 A 1 HETATM 13 C C13 CM5 . . . E 3 -4.017 -17.402 33.952 1 88.82 ? C13 CM5 517 A 1 HETATM 14 C C18 CM5 . . . E 3 -3.761 -18.884 33.652 1 90.2 ? C18 CM5 517 A 1 HETATM 15 O O22 CM5 . . . E 3 -3.23 -19.064 32.335 1 93.27 ? O22 CM5 517 A 1 HETATM 16 C C17 CM5 . . . E 3 -2.773 -19.449 34.676 1 90.73 ? C17 CM5 517 A 1 HETATM 17 O O21 CM5 . . . E 3 -2.534 -20.833 34.404 1 88.76 ? O21 CM5 517 A 1 HETATM 18 O O14 CM5 . . . E 3 -2.964 -16.851 34.763 1 87.05 ? O14 CM5 517 A 1 HETATM 19 C C15 CM5 . . . E 3 -1.691 -17.245 34.227 1 87.31 ? C15 CM5 517 A 1 HETATM 20 C C19 CM5 . . . E 3 -0.568 -16.379 34.799 1 86.17 ? C19 CM5 517 A 1 HETATM 21 O O20 CM5 . . . E 3 -0.349 -16.699 36.177 1 84.58 ? O20 CM5 517 A 1 HETATM 22 C C16 CM5 . . . E 3 -1.44 -18.696 34.607 1 89.95 ? C16 CM5 517 A 1 HETATM 23 O O23 CM5 . . . E 3 -0.556 -19.263 33.628 1 91.46 ? O23 CM5 517 A 1 HETATM 24 C C24 CM5 . . . E 3 0.815 -19.164 34.05 1 94.45 ? C24 CM5 517 A 1 HETATM 25 O O25 CM5 . . . E 3 1.597 -20.073 33.259 1 94.02 ? O25 CM5 517 A 1 HETATM 26 C C26 CM5 . . . E 3 3.008 -19.898 33.473 1 95.29 ? C26 CM5 517 A 1 HETATM 27 C C30 CM5 . . . E 3 3.785 -20.99 32.735 1 95.98 ? C30 CM5 517 A 1 HETATM 28 O O31 CM5 . . . E 3 5.178 -20.854 33.034 1 96.51 ? O31 CM5 517 A 1 HETATM 29 C C27 CM5 . . . E 3 3.36 -19.994 34.959 1 96.06 ? C27 CM5 517 A 1 HETATM 30 O O32 CM5 . . . E 3 3.808 -18.724 35.44 1 95.78 ? O32 CM5 517 A 1 HETATM 31 C C28 CM5 . . . E 3 2.143 -20.461 35.76 1 97.11 ? C28 CM5 517 A 1 HETATM 32 O O33 CM5 . . . E 3 1.768 -21.781 35.355 1 100.16 ? O33 CM5 517 A 1 HETATM 33 C C29 CM5 . . . E 3 0.972 -19.502 35.537 1 95.4 ? C29 CM5 517 A 1 HETATM 34 O O34 CM5 . . . E 3 -0.201 -20.138 36.053 1 95.08 ? O34 CM5 517 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #